Experiment set9H39 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 250mM

200 most detrimental genes:

  gene name fitness t score description  
Psest_1230 +1.2 2.0 Uncharacterized protein conserved in bacteria compare
Psest_3247 +1.2 2.3 Uncharacterized membrane protein compare
Psest_2786 +1.2 1.6 Domain of unknown function (DUF3597). compare
Psest_3890 +1.2 1.6 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0831 +1.2 1.9 hypothetical protein compare
Psest_0867 +1.2 2.2 hypothetical protein compare
Psest_0844 +1.1 3.2 High-affinity Fe2+/Pb2+ permease compare
Psest_0845 +1.1 0.7 hypothetical protein compare
Psest_1643 +1.0 1.4 hypothetical protein compare
Psest_2122 +1.0 0.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4370 +1.0 2.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0414 +1.0 2.9 biotin biosynthesis protein BioC compare
Psest_3231 +1.0 2.2 hypothetical protein compare
Psest_3400 +1.0 1.1 Copper resistance protein D. compare
Psest_0846 +1.0 2.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2646 +0.9 2.1 SOS regulatory protein LexA compare
Psest_3185 +0.9 1.4 MoxR-like ATPases compare
Psest_4177 +0.9 2.0 flagellar biosynthetic protein FliP compare
Psest_2907 +0.9 1.3 Protein of unknown function (DUF3618). compare
Psest_2906 +0.8 1.9 tRNA_Thr_CGT compare
Psest_2243 +0.8 1.4 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1595 +0.8 1.2 Copper chaperone compare
Psest_0007 +0.8 3.9 diguanylate cyclase (GGDEF) domain compare
Psest_0744 +0.8 1.0 Uncharacterized conserved protein compare
Psest_4265 +0.8 4.6 dTDP-4-dehydrorhamnose reductase compare
Psest_0006 +0.8 2.6 alkyl hydroperoxide reductase, F subunit compare
Psest_4303 +0.8 1.7 HEAT repeat. compare
Psest_2532 +0.7 1.6 Uncharacterized protein conserved in bacteria compare
Psest_3554 +0.7 2.1 Uncharacterized protein conserved in bacteria compare
Psest_0093 +0.7 2.3 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1563 +0.7 1.9 Protein of unknown function (DUF548). compare
Psest_2266 +0.7 1.3 hypothetical protein compare
Psest_1819 +0.7 5.7 Nucleoside-diphosphate-sugar epimerases compare
Psest_1166 +0.7 1.8 transcriptional regulator, ArgP family compare
Psest_2855 +0.7 1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3270 +0.7 1.4 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2968 +0.7 4.1 flagellar basal-body rod protein FlgB compare
Psest_2590 +0.7 1.1 3-isopropylmalate dehydratase, small subunit compare
Psest_2956 +0.7 2.3 Uncharacterized conserved protein compare
Psest_0919 +0.7 1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0609 +0.6 1.3 hypothetical protein compare
Psest_3039 +0.6 1.0 periplasmic nitrate reductase, NapE protein compare
Psest_1600 +0.6 1.7 hypothetical protein compare
Psest_4371 +0.6 1.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1498 +0.6 1.3 tol-pal system-associated acyl-CoA thioesterase compare
Psest_1622 +0.6 1.7 hypothetical protein compare
Psest_2282 +0.6 1.6 Dihydroorotate dehydrogenase compare
Psest_2940 +0.6 1.8 Predicted membrane protein compare
Psest_2053 +0.6 1.5 Uncharacterized low-complexity proteins compare
Psest_3245 +0.6 3.4 conserved hypothetical protein compare
Psest_3377 +0.6 0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2725 +0.6 1.7 hypothetical protein compare
Psest_1863 +0.6 1.0 hypothetical protein compare
Psest_3910 +0.6 0.8 Uncharacterized protein conserved in bacteria compare
Psest_1750 +0.6 1.3 Protein of unknown function (DUF2802). compare
Psest_2962 +0.6 3.5 Flagellar basal body L-ring protein compare
Psest_1626 +0.6 1.3 Predicted integral membrane protein compare
Psest_2425 +0.6 1.7 Trk-type K+ transport systems, membrane components compare
Psest_0987 +0.6 1.0 Predicted periplasmic or secreted lipoprotein compare
Psest_3792 +0.6 1.5 Putative translation initiation inhibitor, yjgF family compare
Psest_1520 +0.6 1.7 hypothetical protein compare
Psest_2457 +0.6 1.6 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1381 +0.6 2.4 Predicted alpha/beta hydrolase compare
Psest_2894 +0.6 1.4 addiction module antidote protein, HigA family compare
Psest_4395 +0.6 3.5 hypothetical protein compare
Psest_3222 +0.6 1.1 Putative threonine efflux protein compare
Psest_2992 +0.6 2.4 Uncharacterized conserved protein compare
Psest_3951 +0.6 2.8 proline iminopeptidase, Neisseria-type subfamily compare
Psest_3237 +0.6 1.1 hypothetical protein compare
Psest_0662 +0.6 0.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1372 +0.6 2.3 Methyl-accepting chemotaxis protein compare
Psest_0716 +0.6 1.2 Protein of unknown function (DUF3094). compare
Psest_0805 +0.6 1.0 hypothetical protein compare
Psest_1665 +0.6 1.8 hypothetical protein compare
Psest_4149 +0.5 1.5 fagellar hook-basal body proteins compare
Psest_1718 +0.5 2.2 flagellar hook-basal body complex protein FliE compare
Psest_3536 +0.5 0.9 hypothetical protein compare
Psest_1683 +0.5 2.1 MAF protein compare
Psest_1574 +0.5 1.3 phenazine biosynthesis protein PhzF family compare
Psest_2125 +0.5 2.5 D-gluconate TRAP transporter, periplasmic component (from data) compare
Psest_0757 +0.5 1.9 hypothetical protein compare
Psest_0159 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
Psest_2954 +0.5 1.3 hypothetical protein compare
Psest_3979 +0.5 1.5 Fructose-2,6-bisphosphatase compare
Psest_1366 +0.5 0.6 hypothetical protein compare
Psest_2703 +0.5 1.5 ATPases involved in chromosome partitioning compare
Psest_2561 +0.5 0.6 hypothetical protein compare
Psest_1142 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Psest_1065 +0.5 1.2 hypothetical protein compare
Psest_2634 +0.5 2.0 glycine betaine aldehyde dehydrogenase compare
Psest_0922 +0.5 1.5 alkylhydroperoxidase AhpD family core domain compare
Psest_3494 +0.5 1.5 hypothetical protein compare
Psest_2154 +0.5 2.2 formate dehydrogenase accessory protein FdhE compare
Psest_0218 +0.5 1.4 Acyl-CoA hydrolase compare
Psest_1554 +0.5 2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2585 +0.5 0.6 pseudouridylate synthase I compare
Psest_0119 +0.5 0.9 hypothetical protein compare
Psest_0078 +0.5 0.7 hypothetical protein compare
Psest_0015 +0.5 1.2 Tetratricopeptide repeat. compare
Psest_1954 +0.5 1.5 hypothetical protein compare
Psest_0842 +0.5 1.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2953 +0.5 0.7 Histone acetyltransferase compare
Psest_1826 +0.5 1.9 hypothetical protein compare
Psest_1933 +0.5 2.6 hexose kinase, 1-phosphofructokinase family compare
Psest_1037 +0.5 1.3 acetolactate synthase, small subunit compare
Psest_1421 +0.5 1.1 Glutathione S-transferase compare
Psest_2447 +0.5 1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0503 +0.5 0.7 Acyl dehydratase compare
Psest_0259 +0.5 0.4 cell division ATP-binding protein FtsE compare
Psest_1591 +0.5 2.5 hypothetical protein compare
Psest_1913 +0.5 1.9 Transcriptional regulator compare
Psest_3002 +0.5 0.6 Putative translation initiation inhibitor, yjgF family compare
Psest_3962 +0.5 1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3155 +0.5 1.7 hypothetical protein compare
Psest_3199 +0.5 1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_0386 +0.5 2.8 Membrane protease subunits, stomatin/prohibitin homologs compare
Psest_1394 +0.5 2.3 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit compare
Psest_0593 +0.5 2.7 Protein of unknown function (DUF2933). compare
Psest_0991 +0.5 2.0 Predicted SAM-dependent methyltransferases compare
Psest_2240 +0.5 0.8 hypothetical protein compare
Psest_4330 +0.5 1.7 Protein of unknown function (DUF2909). compare
Psest_1486 +0.5 1.2 hypothetical protein compare
Psest_1078 +0.5 1.7 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data) compare
Psest_0014 +0.5 1.4 PilZ domain. compare
Psest_1183 +0.5 1.3 hydroxyisourate hydrolase compare
Psest_0225 +0.5 1.3 Predicted permease, DMT superfamily compare
Psest_3659 +0.5 1.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2384 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Psest_1325 +0.5 1.9 Molecular chaperone compare
Psest_3436 +0.5 2.5 Domain of unknown function (DUF1987). compare
Psest_3832 +0.5 1.2 hypothetical protein compare
Psest_4163 +0.5 1.3 hypothetical protein compare
Psest_3515 +0.5 2.5 Na+-dependent transporters of the SNF family compare
Psest_3906 +0.5 2.3 hypothetical protein compare
Psest_1475 +0.5 1.6 Uncharacterized protein conserved in bacteria compare
Psest_1260 +0.5 2.0 type IV pilus biogenesis/stability protein PilW compare
Psest_1178 +0.5 2.3 D-glycerate 2-kinase (EC 2.7.1.-) (from data) compare
Psest_1881 +0.5 1.8 Nitroreductase compare
Psest_3853 +0.5 1.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0095 +0.5 2.2 phosphonate C-P lyase system protein PhnH compare
Psest_2465 +0.5 1.3 hypothetical protein compare
Psest_0047 +0.4 1.8 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0355 +0.4 0.6 Glycine cleavage system regulatory protein compare
Psest_0575 +0.4 0.6 HrpA-like helicases compare
Psest_3871 +0.4 1.9 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Psest_2622 +0.4 1.5 TadE-like protein. compare
Psest_1433 +0.4 3.2 hypothetical protein compare
Psest_1919 +0.4 0.8 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_2085 +0.4 2.2 Periplasmic serine proteases (ClpP class) compare
Psest_1745 +0.4 1.6 Flagellar motor component compare
Psest_3197 +0.4 1.6 hypothetical protein compare
Psest_1198 +0.4 1.9 allantoicase compare
Psest_1631 +0.4 0.7 Uncharacterized conserved small protein compare
Psest_1951 +0.4 0.7 Uncharacterized protein conserved in bacteria compare
Psest_2423 +0.4 2.0 Uncharacterized conserved protein compare
Psest_1408 +0.4 1.4 Predicted unusual protein kinase compare
Psest_2960 +0.4 2.2 flagellar rod assembly protein/muramidase FlgJ compare
Psest_1890 +0.4 2.2 Uncharacterized conserved protein compare
Psest_1737 +0.4 1.7 flagellar biosynthesis protein FlhA compare
Psest_1173 +0.4 1.2 hypothetical protein compare
Psest_3449 +0.4 0.8 DJ-1 family protein compare
Psest_4223 +0.4 1.7 Predicted membrane-associated, metal-dependent hydrolase compare
Psest_0813 +0.4 1.3 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1884 +0.4 0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3707 +0.4 1.4 Transcriptional regulator compare
Psest_2445 +0.4 1.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Psest_4021 +0.4 1.4 hypothetical protein compare
Psest_1312 +0.4 1.8 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Psest_1735 +0.4 1.9 flagellar biosynthetic protein FlhB compare
Psest_1022 +0.4 2.3 Thiol:disulfide interchange protein compare
Psest_2121 +0.4 2.0 Predicted ATPase compare
Psest_2057 +0.4 1.7 Predicted secreted protein compare
Psest_1002 +0.4 1.8 glutamyl-queuosine tRNA(Asp) synthetase compare
Psest_0772 +0.4 1.5 Cytochrome c553 compare
Psest_1436 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
Psest_2110 +0.4 1.0 hypothetical protein compare
Psest_3437 +0.4 1.4 diguanylate cyclase (GGDEF) domain compare
Psest_1753 +0.4 1.8 Flagellar hook-length control protein FliK. compare
Psest_3358 +0.4 2.3 Methyltransferase domain. compare
Psest_4252 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
Psest_0568 +0.4 1.1 pseudouridine synthase compare
Psest_1392 +0.4 1.1 ABC-type uncharacterized transport systems, ATPase components compare
Psest_2971 +0.4 2.1 flagella basal body P-ring formation protein FlgA compare
Psest_4197 +0.4 1.0 general secretion pathway protein J compare
Psest_4186 +0.4 1.8 Methylase of polypeptide chain release factors compare
Psest_1393 +0.4 2.3 AraC-type DNA-binding domain-containing proteins compare
Psest_2000 +0.4 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3463 +0.4 1.9 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3212 +0.4 1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2365 +0.4 1.3 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3455 +0.4 1.1 Dihaem cytochrome c. compare
Psest_1518 +0.4 0.9 tRNA_Ser_CGA compare
Psest_0675 +0.4 1.0 Predicted periplasmic lipoprotein compare
Psest_3064 +0.4 0.9 hypothetical protein compare
Psest_3456 +0.4 0.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_1489 +0.4 1.0 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_0741 +0.4 1.7 drug resistance transporter, Bcr/CflA subfamily compare
Psest_3818 +0.4 1.9 endoribonuclease L-PSP, putative compare
Psest_2682 +0.4 1.3 fumarate hydratase, class II compare
Psest_0574 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms