Experiment set9H31 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 50mM

200 most important genes:

  gene name fitness t score description  
Psest_2234 -3.4 -9.1 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1473 -3.1 -6.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -2.5 -8.7 gamma-glutamyl phosphate reductase compare
Psest_2988 -2.5 -8.6 aspartate kinase, monofunctional class compare
Psest_3092 -2.5 -2.3 ribonuclease III, bacterial compare
Psest_0828 -2.3 -6.2 Nitric oxide reductase activation protein compare
Psest_1656 -2.3 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1655 -2.3 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3384 -2.2 -7.6 glutamate 5-kinase compare
Psest_3170 -2.1 -5.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1496 -2.1 -1.4 Holliday junction DNA helicase, RuvA subunit compare
Psest_0799 -2.1 -4.4 Uncharacterized protein involved in response to NO compare
Psest_3367 -2.1 -2.7 translation initation factor SUI1, putative, prokaryotic compare
Psest_3483 -2.0 -6.5 respiratory nitrate reductase, gamma subunit compare
Psest_2104 -1.9 -1.3 IscR-regulated protein YhgI compare
Psest_2579 -1.9 -3.6 amidophosphoribosyltransferase compare
Psest_4191 -1.7 -2.3 Transcriptional regulator compare
Psest_0814 -1.7 -2.3 MoxR-like ATPases compare
Psest_1961 -1.7 -8.8 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0827 -1.7 -10.7 Nitric oxide reductase large subunit compare
Psest_1660 -1.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0826 -1.7 -6.5 Cytochrome c compare
Psest_3488 -1.7 -3.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3480 -1.7 -2.4 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1804 -1.7 -1.9 Superfamily II DNA and RNA helicases compare
Psest_3485 -1.6 -8.9 nitrate reductase, beta subunit compare
Psest_0958 -1.6 -4.4 Oligoketide cyclase/lipid transport protein compare
Psest_0144 -1.6 -5.7 Fe-S cluster protector protein compare
Psest_2651 -1.6 -2.7 DNA topoisomerase I, bacterial compare
Psest_3117 -1.5 -2.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3484 -1.5 -4.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2490 -1.5 -7.4 succinyl-CoA synthetase, alpha subunit compare
Psest_1115 -1.5 -1.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1012 -1.4 -1.4 Signal transduction histidine kinase compare
Psest_1103 -1.4 -2.9 GTP-binding protein YchF compare
Psest_1474 -1.4 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_1087 -1.4 -1.6 uncharacterized peroxidase-related enzyme compare
Psest_1293 -1.4 -2.0 VanZ like family. compare
Psest_1295 -1.4 -3.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3168 -1.4 -1.8 Molybdopterin converting factor, large subunit compare
Psest_3486 -1.4 -10.3 respiratory nitrate reductase, alpha subunit compare
Psest_2329 -1.4 -8.6 Transcriptional regulator compare
Psest_3113 -1.4 -1.8 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0078 -1.4 -1.5 hypothetical protein compare
Psest_3479 -1.3 -3.8 molybdenum cofactor synthesis domain compare
Psest_1013 -1.3 -1.3 phosphoribosylamine--glycine ligase compare
Psest_0164 -1.3 -1.4 Glutaredoxin, GrxC family compare
Psest_2067 -1.3 -1.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2976 -1.3 -1.2 hypothetical protein compare
Psest_3998 -1.3 -4.3 glutamate--cysteine ligase compare
Psest_1037 -1.3 -2.3 acetolactate synthase, small subunit compare
Psest_1920 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2585 -1.3 -1.4 pseudouridylate synthase I compare
Psest_2999 -1.3 -3.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1661 -1.2 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0836 -1.2 -4.6 Collagenase and related proteases compare
Psest_1905 -1.2 -2.7 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1511 -1.2 -4.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3226 -1.2 -1.2 Predicted membrane protein compare
Psest_2491 -1.2 -4.1 succinyl-CoA synthetase, beta subunit compare
Psest_1663 -1.2 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2945 -1.2 -1.2 septum site-determining protein MinC compare
Psest_3159 -1.2 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2901 -1.2 -1.4 hypothetical protein compare
Psest_3810 -1.2 -0.8 orotate phosphoribosyltransferase compare
Psest_3129 -1.2 -1.5 tyrosine recombinase XerD compare
Psest_3301 -1.1 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_0066 -1.1 -1.8 Protein of unknown function (DUF3060). compare
Psest_0296 -1.1 -5.4 glutathione synthetase, prokaryotic compare
Psest_4142 -1.1 -1.2 hypothetical protein compare
Psest_1206 -1.1 -3.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0835 -1.0 -7.2 Collagenase and related proteases compare
Psest_1292 -1.0 -4.0 monothiol glutaredoxin, Grx4 family compare
Psest_0952 -1.0 -1.4 Uncharacterized conserved protein compare
Psest_0511 -1.0 -1.4 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3000 -1.0 -4.4 molybdate ABC transporter, permease protein compare
Psest_4315 -1.0 -2.0 ABC-type metal ion transport system, permease component compare
Psest_0959 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2855 -0.9 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2766 -0.9 -1.1 hypothetical protein compare
Psest_0466 -0.9 -1.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3927 -0.9 -2.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0165 -0.9 -1.9 protein-export chaperone SecB compare
Psest_3692 -0.9 -2.8 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1506 -0.9 -2.8 queuosine biosynthesis protein QueC compare
Psest_3487 -0.9 -5.3 Nitrate/nitrite transporter compare
Psest_3115 -0.9 -3.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1001 -0.9 -2.3 hypothetical protein compare
Psest_4170 -0.9 -1.7 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2136 -0.9 -5.1 Predicted homoserine dehydrogenase compare
Psest_1111 -0.8 -1.7 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3296 -0.8 -1.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1082 -0.8 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3080 -0.8 -1.0 AraC-type DNA-binding domain-containing proteins compare
Psest_3767 -0.8 -2.2 tyrosine recombinase XerC compare
Psest_3307 -0.8 -3.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0953 -0.8 -4.3 iron-sulfur cluster-binding protein compare
Psest_0954 -0.8 -3.6 Fe-S oxidoreductase compare
Psest_1659 -0.8 -1.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3573 -0.8 -2.3 dTDP-4-dehydrorhamnose reductase compare
Psest_0837 -0.8 -1.7 Putative lipid carrier protein compare
Psest_1840 -0.8 -7.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3389 -0.8 -2.2 hypothetical protein compare
Psest_3937 -0.8 -1.0 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3114 -0.8 -3.3 electron transport complex, RnfABCDGE type, C subunit compare
Psest_4314 -0.8 -2.6 ABC-type metal ion transport system, ATPase component compare
Psest_3490 -0.8 -1.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0325 -0.8 -5.6 Putative threonine efflux protein compare
Psest_0063 -0.8 -4.2 tryptophan synthase, beta subunit compare
Psest_1884 -0.7 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2872 -0.7 -1.0 protein RecA compare
Psest_2613 -0.7 -1.1 hypothetical protein compare
Psest_4256 -0.7 -1.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0708 -0.7 -0.9 outer membrane assembly lipoprotein YfiO compare
Psest_2001 -0.7 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1241 -0.7 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_2018 -0.7 -1.3 Uncharacterized conserved protein compare
Psest_1451 -0.7 -1.4 Uncharacterized ABC-type transport system, permease components compare
Psest_0795 -0.7 -1.5 ABC-type multidrug transport system, ATPase component compare
Psest_1480 -0.7 -1.6 arsenate reductase (glutaredoxin) compare
Psest_1540 -0.7 -0.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_0257 -0.7 -1.6 Predicted Zn-dependent peptidases compare
Psest_1989 -0.7 -2.9 Transcriptional regulators compare
Psest_0174 -0.6 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3471 -0.6 -2.8 Thermostable hemolysin. compare
Psest_1249 -0.6 -2.4 serine O-acetyltransferase compare
Psest_0212 -0.6 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_1305 -0.6 -2.0 Heat shock protein compare
Psest_0534 -0.6 -2.6 hypothetical protein compare
Psest_3489 -0.6 -3.9 hypothetical protein compare
Psest_4003 -0.6 -2.3 TIGR00153 family protein compare
Psest_3331 -0.6 -1.1 rare lipoprotein A compare
Psest_2748 -0.6 -1.3 Transcriptional regulator compare
Psest_1628 -0.6 -2.2 hypothetical protein compare
Psest_2681 -0.6 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2757 -0.6 -0.8 hypothetical protein compare
Psest_0309 -0.6 -0.5 RND family efflux transporter, MFP subunit compare
Psest_3112 -0.6 -1.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0062 -0.6 -3.7 tryptophan synthase, alpha subunit compare
Psest_3100 -0.6 -3.1 RNA polymerase sigma factor RpoE compare
Psest_4219 -0.6 -0.9 DNA polymerase I compare
Psest_0848 -0.6 -1.3 hypothetical protein compare
Psest_2866 -0.6 -2.1 Uncharacterized conserved protein compare
Psest_2062 -0.6 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1457 -0.6 -1.2 FOG: Ankyrin repeat compare
Psest_2278 -0.6 -1.7 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2424 -0.6 -1.1 K+ transport systems, NAD-binding component compare
Psest_4363 -0.6 -2.6 ATPases involved in chromosome partitioning compare
Psest_2101 -0.6 -1.1 hypothetical protein compare
Psest_3697 -0.6 -1.1 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0869 -0.6 -1.3 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0993 -0.6 -3.2 Glucose-6-phosphate isomerase compare
Psest_4298 -0.6 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1960 -0.6 -1.8 Bacterial protein of unknown function (DUF903). compare
Psest_1783 -0.6 -1.4 Predicted transporter component compare
Psest_2756 -0.6 -0.8 hypothetical protein compare
Psest_3843 -0.6 -3.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0485 -0.6 -1.5 clan AA aspartic protease, TIGR02281 family compare
Psest_0891 -0.6 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_4158 -0.5 -1.8 Flagellar motor protein compare
Psest_4189 -0.5 -3.1 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_2637 -0.5 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0831 -0.5 -0.7 hypothetical protein compare
Psest_1466 -0.5 -1.4 transcriptional regulator, Spx/MgsR family compare
Psest_4310 -0.5 -0.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_4023 -0.5 -2.3 hypothetical protein compare
Psest_1974 -0.5 -1.6 integration host factor, alpha subunit compare
Psest_3074 -0.5 -2.9 Domain of Unknown Function (DUF1206). compare
Psest_0575 -0.5 -0.6 HrpA-like helicases compare
Psest_1951 -0.5 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0259 -0.5 -0.7 cell division ATP-binding protein FtsE compare
Psest_3001 -0.5 -1.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_3554 -0.5 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1231 -0.5 -2.6 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_3391 -0.5 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1195 -0.5 -1.2 xanthine permease compare
Psest_3014 -0.5 -0.9 cob(I)alamin adenosyltransferase compare
Psest_1282 -0.5 -0.9 Amidases related to nicotinamidase compare
Psest_1062 -0.5 -2.3 Carbonic anhydrase compare
Psest_4405 -0.5 -0.7 hypothetical protein compare
Psest_3647 -0.5 -2.0 Indole-3-glycerol phosphate synthase compare
Psest_2682 -0.5 -1.6 fumarate hydratase, class II compare
Psest_3904 -0.5 -0.6 hypothetical protein compare
Psest_3701 -0.5 -1.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
Psest_3177 -0.5 -0.9 hypothetical protein compare
Psest_0376 -0.5 -1.8 glucarate dehydratase compare
Psest_0087 -0.5 -1.8 hypothetical protein compare
Psest_1657 -0.5 -0.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0021 -0.5 -1.8 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_4137 -0.5 -2.4 Uncharacterized iron-regulated membrane protein compare
Psest_4113 -0.5 -3.0 hypothetical protein compare
Psest_3777 -0.5 -1.4 diguanylate cyclase (GGDEF) domain compare
Psest_4209 -0.5 -0.7 Uncharacterized conserved small protein compare
Psest_1179 -0.5 -0.9 2-hydroxy-3-oxopropionate reductase compare
Psest_1636 -0.5 -1.4 putative transporter, required for glycine utilization (from data) compare
Psest_3146 -0.5 -0.8 hypothetical protein compare
Psest_1947 -0.5 -0.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4161 -0.5 -1.6 Flagellar basal body-associated protein compare
Psest_0175 -0.5 -2.0 Xaa-Pro aminopeptidase compare
Psest_2565 -0.5 -0.8 Transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms