Experiment set9H30 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM

200 most important genes:

  gene name fitness t score description  
Psest_1724 -4.6 -3.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1473 -3.8 -5.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.6 -6.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3092 -2.9 -1.9 ribonuclease III, bacterial compare
Psest_3479 -2.7 -4.5 molybdenum cofactor synthesis domain compare
Psest_0508 -2.5 -8.3 gamma-glutamyl phosphate reductase compare
Psest_0393 -2.5 -6.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3484 -2.5 -5.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1656 -2.5 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3170 -2.5 -5.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2988 -2.5 -7.8 aspartate kinase, monofunctional class compare
Psest_0828 -2.4 -5.4 Nitric oxide reductase activation protein compare
Psest_0164 -2.3 -1.8 Glutaredoxin, GrxC family compare
Psest_3531 -2.3 -1.9 Peptidase propeptide and YPEB domain. compare
Psest_4191 -2.2 -2.6 Transcriptional regulator compare
Psest_2579 -2.2 -2.1 amidophosphoribosyltransferase compare
Psest_1295 -2.0 -2.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2324 -2.0 -11.1 hypothetical protein compare
Psest_3384 -1.9 -6.8 glutamate 5-kinase compare
Psest_2325 -1.9 -7.2 alpha-L-glutamate ligase-related protein compare
Psest_3483 -1.9 -5.9 respiratory nitrate reductase, gamma subunit compare
Psest_0193 -1.9 -1.7 conserved hypothetical protein compare
Psest_0144 -1.9 -7.4 Fe-S cluster protector protein compare
Psest_1655 -1.9 -2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3937 -1.9 -2.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_1660 -1.8 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0827 -1.8 -10.5 Nitric oxide reductase large subunit compare
Psest_0799 -1.8 -3.9 Uncharacterized protein involved in response to NO compare
Psest_2872 -1.7 -1.2 protein RecA compare
Psest_1115 -1.7 -2.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2329 -1.7 -9.7 Transcriptional regulator compare
Psest_1961 -1.7 -8.6 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3117 -1.7 -2.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0814 -1.7 -2.2 MoxR-like ATPases compare
Psest_0837 -1.6 -2.6 Putative lipid carrier protein compare
Psest_0954 -1.6 -5.4 Fe-S oxidoreductase compare
Psest_0958 -1.6 -4.1 Oligoketide cyclase/lipid transport protein compare
Psest_3485 -1.6 -8.4 nitrate reductase, beta subunit compare
Psest_4010 -1.6 -1.8 peroxiredoxin, OsmC subfamily compare
Psest_2066 -1.5 -2.8 ABC-type uncharacterized transport system, permease component compare
Psest_2001 -1.5 -1.4 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3301 -1.5 -3.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_1292 -1.5 -5.0 monothiol glutaredoxin, Grx4 family compare
Psest_3168 -1.5 -1.8 Molybdopterin converting factor, large subunit compare
Psest_1012 -1.5 -1.0 Signal transduction histidine kinase compare
Psest_0969 -1.4 -1.8 transcription elongation factor GreA compare
Psest_0959 -1.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1474 -1.4 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_2104 -1.4 -1.3 IscR-regulated protein YhgI compare
Psest_3304 -1.4 -3.4 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1762 -1.4 -2.0 cytochrome c-type biogenesis protein CcmI compare
Psest_3486 -1.4 -9.8 respiratory nitrate reductase, alpha subunit compare
Psest_3565 -1.4 -1.2 hypothetical protein compare
Psest_2545 -1.3 -2.6 recombination protein RecR compare
Psest_1366 -1.3 -1.3 hypothetical protein compare
Psest_3697 -1.3 -2.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_0212 -1.3 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_3908 -1.3 -1.9 Cytochrome c553 compare
Psest_0277 -1.3 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_4314 -1.3 -3.4 ABC-type metal ion transport system, ATPase component compare
Psest_1013 -1.2 -1.2 phosphoribosylamine--glycine ligase compare
Psest_0953 -1.2 -5.2 iron-sulfur cluster-binding protein compare
Psest_4243 -1.2 -2.1 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2490 -1.2 -6.2 succinyl-CoA synthetase, alpha subunit compare
Psest_3031 -1.2 -1.1 hypothetical protein compare
Psest_1496 -1.2 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2293 -1.2 -1.6 hypothetical protein compare
Psest_2561 -1.2 -1.1 hypothetical protein compare
Psest_1511 -1.2 -3.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1249 -1.2 -3.6 serine O-acetyltransferase compare
Psest_2538 -1.2 -1.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1974 -1.2 -2.6 integration host factor, alpha subunit compare
Psest_2899 -1.1 -1.4 hypothetical protein compare
Psest_3810 -1.1 -0.8 orotate phosphoribosyltransferase compare
Psest_0835 -1.1 -7.7 Collagenase and related proteases compare
Psest_3998 -1.1 -3.7 glutamate--cysteine ligase compare
Psest_3000 -1.1 -4.6 molybdate ABC transporter, permease protein compare
Psest_0919 -1.1 -1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0826 -1.1 -4.8 Cytochrome c compare
Psest_0515 -1.1 -1.9 rare lipoprotein A compare
Psest_0309 -1.1 -1.0 RND family efflux transporter, MFP subunit compare
Psest_1999 -1.1 -1.1 pseudouridine synthase compare
Psest_0998 -1.1 -1.5 poly(A) polymerase compare
Psest_1659 -1.1 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3159 -1.0 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0385 -1.0 -2.0 Conserved secreted protein compare
Psest_2088 -1.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0725 -1.0 -1.5 Negative regulator of beta-lactamase expression compare
Psest_2651 -1.0 -1.8 DNA topoisomerase I, bacterial compare
Psest_0716 -1.0 -1.6 Protein of unknown function (DUF3094). compare
Psest_2999 -1.0 -2.9 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_1814 -1.0 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4003 -1.0 -2.9 TIGR00153 family protein compare
Psest_1532 -1.0 -2.2 DNA recombination-dependent growth factor C compare
Psest_2491 -1.0 -3.4 succinyl-CoA synthetase, beta subunit compare
Psest_3762 -1.0 -2.7 iron donor protein CyaY compare
Psest_4406 -1.0 -1.1 hypothetical protein compare
Psest_0575 -1.0 -1.0 HrpA-like helicases compare
Psest_2935 -1.0 -2.4 hypothetical protein compare
Psest_3487 -1.0 -5.8 Nitrate/nitrite transporter compare
Psest_3303 -1.0 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3767 -1.0 -2.5 tyrosine recombinase XerC compare
Psest_2581 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3060 -1.0 -2.4 hypothetical protein compare
Psest_3045 -1.0 -1.7 Cold shock proteins compare
Psest_1540 -1.0 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_0836 -1.0 -3.7 Collagenase and related proteases compare
Psest_3784 -1.0 -1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2764 -1.0 -1.0 hypothetical protein compare
Psest_1082 -0.9 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1242 -0.9 -1.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1661 -0.9 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2015 -0.9 -1.8 Type II secretory pathway, component PulD compare
Psest_1322 -0.9 -1.7 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0066 -0.9 -1.4 Protein of unknown function (DUF3060). compare
Psest_0760 -0.9 -2.4 Polyketide cyclase / dehydrase and lipid transport. compare
Psest_4363 -0.9 -3.7 ATPases involved in chromosome partitioning compare
Psest_2758 -0.9 -1.7 Predicted transcriptional regulators compare
Psest_4098 -0.9 -1.7 Superfamily I DNA and RNA helicases compare
Psest_2018 -0.9 -1.5 Uncharacterized conserved protein compare
Psest_2726 -0.9 -1.3 Rhodanese-related sulfurtransferase compare
Psest_4183 -0.9 -1.4 PilZ domain. compare
Psest_3307 -0.9 -3.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0558 -0.9 -0.8 urease, beta subunit compare
Psest_3481 -0.9 -3.7 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_0993 -0.9 -4.4 Glucose-6-phosphate isomerase compare
Psest_0831 -0.9 -1.0 hypothetical protein compare
Psest_4142 -0.9 -1.0 hypothetical protein compare
Psest_3413 -0.9 -1.8 hypothetical protein compare
Psest_1657 -0.9 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3237 -0.9 -1.3 hypothetical protein compare
Psest_3960 -0.9 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0296 -0.8 -4.1 glutathione synthetase, prokaryotic compare
Psest_1765 -0.8 -3.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0697 -0.8 -1.8 ribosomal protein L9 compare
Psest_1103 -0.8 -1.8 GTP-binding protein YchF compare
Psest_2810 -0.8 -2.7 5'/3'-nucleotidase SurE compare
Psest_0442 -0.8 -1.6 ATPases of the AAA+ class compare
Psest_1506 -0.8 -2.5 queuosine biosynthesis protein QueC compare
Psest_2748 -0.8 -0.8 Transcriptional regulator compare
Psest_3367 -0.8 -1.5 translation initation factor SUI1, putative, prokaryotic compare
Psest_3843 -0.8 -4.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1879 -0.8 -1.3 Trk-type K+ transport systems, membrane components compare
Psest_1804 -0.8 -1.1 Superfamily II DNA and RNA helicases compare
Psest_3780 -0.8 -2.0 Transcriptional regulator compare
Psest_1463 -0.8 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0652 -0.8 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2232 -0.8 -5.1 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3489 -0.8 -4.7 hypothetical protein compare
Psest_2566 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0514 -0.8 -2.9 lytic murein transglycosylase B compare
Psest_1065 -0.8 -1.4 hypothetical protein compare
Psest_3398 -0.8 -1.8 large conductance mechanosensitive channel protein compare
Psest_3084 -0.8 -0.9 methyltransferase, putative compare
Psest_0292 -0.8 -1.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1111 -0.8 -1.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_2323 -0.8 -4.6 Uncharacterized protein conserved in archaea compare
Psest_1183 -0.8 -1.8 hydroxyisourate hydrolase compare
Psest_0861 -0.8 -3.0 hypothetical protein compare
Psest_4004 -0.8 -1.7 Uncharacterized conserved protein compare
Psest_1087 -0.8 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_1542 -0.8 -2.5 Uncharacterized proteins, homologs of lactam utilization protein B compare
Psest_2953 -0.7 -1.2 Histone acetyltransferase compare
Psest_3113 -0.7 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2933 -0.7 -4.1 Signal transduction histidine kinase compare
Psest_2645 -0.7 -3.4 Transcriptional regulator compare
Psest_1419 -0.7 -2.6 Transcriptional regulator compare
Psest_3482 -0.7 -2.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4364 -0.7 -2.3 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2756 -0.7 -0.9 hypothetical protein compare
Psest_3306 -0.7 -2.2 conserved hypothetical integral membrane protein compare
Psest_0310 -0.7 -1.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1840 -0.7 -6.1 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3115 -0.7 -2.6 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0161 -0.7 -0.9 Membrane-bound metallopeptidase compare
Psest_3001 -0.7 -1.8 molybdenum ABC transporter, ATP-binding protein compare
Psest_3077 -0.7 -1.5 Protein of unknown function (DUF3203). compare
Psest_0952 -0.7 -1.0 Uncharacterized conserved protein compare
Psest_4170 -0.7 -1.3 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2590 -0.7 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0662 -0.7 -1.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1058 -0.7 -1.8 ribosomal-protein-alanine acetyltransferase compare
Psest_2023 -0.7 -1.4 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2712 -0.7 -2.0 Surface lipoprotein compare
Psest_0257 -0.7 -1.5 Predicted Zn-dependent peptidases compare
Psest_3188 -0.7 -2.0 hypothetical protein compare
Psest_2057 -0.7 -2.4 Predicted secreted protein compare
Psest_0266 -0.7 -2.6 thiamine biosynthesis protein ThiS compare
Psest_3114 -0.7 -2.8 electron transport complex, RnfABCDGE type, C subunit compare
Psest_4298 -0.6 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0595 -0.6 -1.8 Uncharacterized conserved protein compare
Psest_0170 -0.6 -2.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_1599 -0.6 -1.7 heavy metal sensor kinase compare
Psest_3064 -0.6 -1.5 hypothetical protein compare
Psest_3112 -0.6 -1.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0063 -0.6 -3.5 tryptophan synthase, beta subunit compare
Psest_3409 -0.6 -2.3 hypothetical protein compare
Psest_3296 -0.6 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2815 -0.6 -3.2 S-formylglutathione hydrolase compare
Psest_3222 -0.6 -1.3 Putative threonine efflux protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms