Experiment set9H23 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

200 most important genes:

  gene name fitness t score description  
Psest_1473 -3.9 -2.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2988 -3.0 -6.7 aspartate kinase, monofunctional class compare
Psest_3168 -2.8 -1.9 Molybdopterin converting factor, large subunit compare
Psest_2234 -2.6 -6.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1505 -2.6 -1.7 Organic radical activating enzymes compare
Psest_3301 -2.5 -3.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_0508 -2.4 -6.6 gamma-glutamyl phosphate reductase compare
Psest_1115 -2.4 -2.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3479 -2.3 -4.1 molybdenum cofactor synthesis domain compare
Psest_3092 -2.3 -1.6 ribonuclease III, bacterial compare
Psest_2591 -2.3 -2.2 3-isopropylmalate dehydratase, large subunit compare
Psest_0828 -2.2 -4.2 Nitric oxide reductase activation protein compare
Psest_3384 -2.0 -5.7 glutamate 5-kinase compare
Psest_3177 -2.0 -1.9 hypothetical protein compare
Psest_4049 -2.0 -1.9 hypothetical protein compare
Psest_0959 -2.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2491 -2.0 -4.1 succinyl-CoA synthetase, beta subunit compare
Psest_0958 -2.0 -2.6 Oligoketide cyclase/lipid transport protein compare
Psest_1656 -1.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0836 -1.9 -4.4 Collagenase and related proteases compare
Psest_0826 -1.9 -5.4 Cytochrome c compare
Psest_2490 -1.9 -6.2 succinyl-CoA synthetase, alpha subunit compare
Psest_0827 -1.9 -9.1 Nitric oxide reductase large subunit compare
Psest_0260 -1.8 -1.2 Cell division protein compare
Psest_1677 -1.8 -2.3 Protein-tyrosine-phosphatase compare
Psest_2096 -1.8 -2.9 Domain of unknown function (DUF1883). compare
Psest_1457 -1.8 -1.7 FOG: Ankyrin repeat compare
Psest_3117 -1.8 -2.1 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3129 -1.7 -1.5 tyrosine recombinase XerD compare
Psest_4191 -1.7 -1.9 Transcriptional regulator compare
Psest_1888 -1.6 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1463 -1.6 -1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_0952 -1.6 -1.5 Uncharacterized conserved protein compare
Psest_3700 -1.6 -1.4 hypothetical protein compare
Psest_1777 -1.6 -3.4 hypothetical protein compare
Psest_1295 -1.6 -1.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2119 -1.6 -2.9 Glycine/D-amino acid oxidases (deaminating) compare
Psest_2229 -1.6 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_2579 -1.5 -1.8 amidophosphoribosyltransferase compare
Psest_1496 -1.5 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_2945 -1.5 -1.0 septum site-determining protein MinC compare
Psest_3843 -1.5 -5.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2424 -1.5 -1.9 K+ transport systems, NAD-binding component compare
Psest_3938 -1.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_3395 -1.5 -1.1 hypothetical protein compare
Psest_0835 -1.5 -8.0 Collagenase and related proteases compare
Psest_1961 -1.4 -6.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1357 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1540 -1.4 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_4406 -1.4 -1.6 hypothetical protein compare
Psest_2981 -1.4 -1.6 sodium pump decarboxylases, gamma subunit compare
Psest_3480 -1.4 -1.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0796 -1.4 -2.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_1655 -1.4 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1160 -1.4 -2.2 Uncharacterized conserved protein compare
Psest_2280 -1.4 -3.1 Predicted membrane protein compare
Psest_0814 -1.4 -1.6 MoxR-like ATPases compare
Psest_0799 -1.3 -2.5 Uncharacterized protein involved in response to NO compare
Psest_3908 -1.3 -1.6 Cytochrome c553 compare
Psest_1103 -1.3 -2.0 GTP-binding protein YchF compare
Psest_2001 -1.3 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3064 -1.3 -1.9 hypothetical protein compare
Psest_0830 -1.3 -5.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2736 -1.3 -2.9 Transposase and inactivated derivatives compare
Psest_3488 -1.3 -2.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2104 -1.3 -0.9 IscR-regulated protein YhgI compare
Psest_0867 -1.3 -1.0 hypothetical protein compare
Psest_0144 -1.3 -4.9 Fe-S cluster protector protein compare
Psest_0218 -1.3 -2.0 Acyl-CoA hydrolase compare
Psest_1870 -1.3 -1.0 Transcriptional regulators compare
Psest_1293 -1.2 -1.4 VanZ like family. compare
Psest_0708 -1.2 -1.1 outer membrane assembly lipoprotein YfiO compare
Psest_2899 -1.2 -1.3 hypothetical protein compare
Psest_2429 -1.2 -2.4 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3486 -1.2 -7.8 respiratory nitrate reductase, alpha subunit compare
Psest_1657 -1.2 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2543 -1.2 -2.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1292 -1.2 -3.4 monothiol glutaredoxin, Grx4 family compare
Psest_4161 -1.2 -2.8 Flagellar basal body-associated protein compare
Psest_3485 -1.2 -5.7 nitrate reductase, beta subunit compare
Psest_1428 -1.2 -2.2 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3039 -1.2 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_3170 -1.1 -3.1 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2358 -1.1 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0953 -1.1 -4.4 iron-sulfur cluster-binding protein compare
Psest_3777 -1.1 -2.0 diguanylate cyclase (GGDEF) domain compare
Psest_2756 -1.1 -1.0 hypothetical protein compare
Psest_0954 -1.1 -3.2 Fe-S oxidoreductase compare
Psest_1417 -1.1 -1.0 hypothetical protein compare
Psest_3489 -1.1 -4.9 hypothetical protein compare
Psest_1681 -1.1 -2.1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_0719 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_1920 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0164 -1.0 -0.9 Glutaredoxin, GrxC family compare
Psest_0842 -1.0 -1.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0133 -1.0 -0.9 type VI secretion protein, VC_A0107 family compare
Psest_2585 -1.0 -1.0 pseudouridylate synthase I compare
Psest_3484 -1.0 -2.8 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0822 -1.0 -2.2 Transcriptional regulators compare
Psest_0853 -1.0 -2.1 6-phosphogluconolactonase compare
Psest_1731 -1.0 -1.3 flagellar biosynthetic protein FliO compare
Psest_0031 -1.0 -1.5 Uncharacterized conserved protein compare
Psest_0385 -1.0 -1.6 Conserved secreted protein compare
Psest_3507 -1.0 -2.3 FOG: EAL domain compare
Psest_4363 -1.0 -3.4 ATPases involved in chromosome partitioning compare
Psest_2083 -1.0 -2.7 Putative sterol carrier protein compare
Psest_3296 -1.0 -1.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2048 -1.0 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1049 -1.0 -2.2 Uncharacterized paraquat-inducible protein A compare
Psest_1532 -1.0 -1.7 DNA recombination-dependent growth factor C compare
Psest_1279 -1.0 -1.9 hypothetical protein compare
Psest_2346 -1.0 -2.5 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_3487 -1.0 -4.8 Nitrate/nitrite transporter compare
Psest_3483 -1.0 -3.2 respiratory nitrate reductase, gamma subunit compare
Psest_2239 -1.0 -2.4 RES domain. compare
Psest_2768 -1.0 -1.5 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_0515 -1.0 -1.3 rare lipoprotein A compare
Psest_0821 -0.9 -4.7 Cytochrome D1 heme domain. compare
Psest_4298 -0.9 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3115 -0.9 -2.7 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1602 -0.9 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3114 -0.9 -3.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1633 -0.9 -2.8 Protein of unknown function (DUF3365). compare
Psest_1661 -0.9 -0.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3307 -0.9 -2.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0837 -0.9 -1.5 Putative lipid carrier protein compare
Psest_1282 -0.9 -1.5 Amidases related to nicotinamidase compare
Psest_3692 -0.9 -2.0 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_2999 -0.9 -2.4 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_2037 -0.9 -2.6 uroporphyrin-III C-methyltransferase compare
Psest_0660 -0.9 -1.5 Methyl-accepting chemotaxis protein compare
Psest_0114 -0.9 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_3306 -0.9 -2.1 conserved hypothetical integral membrane protein compare
Psest_2712 -0.9 -2.0 Surface lipoprotein compare
Psest_1511 -0.9 -2.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0097 -0.9 -1.3 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1504 -0.9 -1.9 tol-pal system protein YbgF compare
Psest_1013 -0.9 -0.8 phosphoribosylamine--glycine ligase compare
Psest_1843 -0.9 -1.4 Uncharacterized Fe-S protein compare
Psest_0417 -0.9 -0.8 Acyl-CoA dehydrogenases compare
Psest_0389 -0.9 -2.2 hypothetical protein compare
Psest_0296 -0.9 -3.7 glutathione synthetase, prokaryotic compare
Psest_1012 -0.9 -1.0 Signal transduction histidine kinase compare
Psest_4216 -0.9 -2.3 hypothetical protein compare
Psest_1516 -0.9 -1.2 Uncharacterized lipoprotein compare
Psest_1474 -0.9 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_1322 -0.9 -1.3 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1840 -0.9 -7.4 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3146 -0.8 -1.1 hypothetical protein compare
Psest_0823 -0.8 -1.7 Transcriptional regulators compare
Psest_3810 -0.8 -0.6 orotate phosphoribosyltransferase compare
Psest_3305 -0.8 -2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2872 -0.8 -0.9 protein RecA compare
Psest_3565 -0.8 -0.8 hypothetical protein compare
Psest_3413 -0.8 -1.4 hypothetical protein compare
Psest_3555 -0.8 -1.9 Predicted methyltransferase compare
Psest_3767 -0.8 -1.9 tyrosine recombinase XerC compare
Psest_2720 -0.8 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1999 -0.8 -0.7 pseudouridine synthase compare
Psest_1510 -0.8 -1.6 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0376 -0.8 -2.1 glucarate dehydratase compare
Psest_0795 -0.8 -1.9 ABC-type multidrug transport system, ATPase component compare
Psest_1804 -0.8 -1.0 Superfamily II DNA and RNA helicases compare
Psest_3398 -0.8 -1.7 large conductance mechanosensitive channel protein compare
Psest_0062 -0.8 -4.1 tryptophan synthase, alpha subunit compare
Psest_3490 -0.8 -1.5 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2136 -0.8 -3.7 Predicted homoserine dehydrogenase compare
Psest_3159 -0.8 -1.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3334 -0.8 -1.9 Integral membrane protein CcmA involved in cell shape determination compare
Psest_1752 -0.8 -1.0 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1592 -0.8 -2.1 hypothetical protein compare
Psest_2681 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3230 -0.8 -2.0 Uncharacterized conserved protein compare
Psest_1945 -0.8 -1.8 hypothetical protein compare
Psest_0817 -0.8 -3.5 Ethylbenzene dehydrogenase. compare
Psest_0697 -0.8 -1.3 ribosomal protein L9 compare
Psest_2901 -0.8 -0.8 hypothetical protein compare
Psest_1625 -0.8 -1.5 hypothetical protein compare
Psest_3573 -0.8 -1.6 dTDP-4-dehydrorhamnose reductase compare
Psest_1349 -0.8 -1.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3995 -0.8 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0797 -0.7 -3.6 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1659 -0.7 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2758 -0.7 -1.4 Predicted transcriptional regulators compare
Psest_2752 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_4290 -0.7 -2.7 N-carbamoylputrescine amidase compare
Psest_4170 -0.7 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3803 -0.7 -0.7 DNA repair protein radc compare
Psest_3647 -0.7 -2.2 Indole-3-glycerol phosphate synthase compare
Psest_2645 -0.7 -2.7 Transcriptional regulator compare
Psest_2703 -0.7 -1.1 ATPases involved in chromosome partitioning compare
Psest_1724 -0.7 -1.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0810 -0.7 -2.8 uroporphyrin-III C-methyltransferase compare
Psest_2909 -0.7 -1.4 hypothetical protein compare
Psest_3819 -0.7 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0811 -0.7 -3.6 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3474 -0.7 -1.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_0820 -0.7 -1.7 hypothetical protein compare
Psest_1176 -0.7 -1.3 Urea transporter compare
Psest_2779 -0.7 -1.7 Methyl-accepting chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms