Experiment set9H21 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 20mM and .05mM Tungsten

200 most important genes:

  gene name fitness t score description  
Psest_2901 -4.0 -2.7 hypothetical protein compare
Psest_3480 -3.8 -2.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3113 -3.1 -2.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0814 -3.0 -2.1 MoxR-like ATPases compare
Psest_2234 -2.8 -7.4 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2988 -2.7 -6.1 aspartate kinase, monofunctional class compare
Psest_3064 -2.6 -3.1 hypothetical protein compare
Psest_1473 -2.6 -5.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0161 -2.6 -2.5 Membrane-bound metallopeptidase compare
Psest_0828 -2.4 -5.1 Nitric oxide reductase activation protein compare
Psest_3384 -2.4 -6.6 glutamate 5-kinase compare
Psest_0508 -2.3 -7.4 gamma-glutamyl phosphate reductase compare
Psest_2490 -2.2 -7.1 succinyl-CoA synthetase, alpha subunit compare
Psest_2757 -2.2 -1.5 hypothetical protein compare
Psest_0826 -2.2 -6.3 Cytochrome c compare
Psest_1656 -2.2 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2491 -2.1 -4.7 succinyl-CoA synthetase, beta subunit compare
Psest_3937 -2.1 -2.7 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3092 -2.1 -1.9 ribonuclease III, bacterial compare
Psest_2899 -2.1 -1.9 hypothetical protein compare
Psest_3301 -2.0 -3.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_0243 -2.0 -1.9 hypothetical protein compare
Psest_0958 -2.0 -3.5 Oligoketide cyclase/lipid transport protein compare
Psest_1215 -1.9 -2.4 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_1660 -1.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1888 -1.9 -1.5 Sua5/YciO/YrdC/YwlC family protein compare
Psest_0309 -1.9 -1.2 RND family efflux transporter, MFP subunit compare
Psest_0827 -1.8 -9.7 Nitric oxide reductase large subunit compare
Psest_1782 -1.8 -1.8 Predicted transcriptional regulators compare
Psest_1295 -1.8 -2.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1655 -1.7 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2579 -1.7 -2.3 amidophosphoribosyltransferase compare
Psest_1505 -1.7 -1.9 Organic radical activating enzymes compare
Psest_3395 -1.7 -1.3 hypothetical protein compare
Psest_0799 -1.6 -3.0 Uncharacterized protein involved in response to NO compare
Psest_3129 -1.6 -1.5 tyrosine recombinase XerD compare
Psest_4191 -1.6 -2.3 Transcriptional regulator compare
Psest_3114 -1.5 -4.4 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3483 -1.5 -4.9 respiratory nitrate reductase, gamma subunit compare
Psest_1961 -1.5 -6.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0954 -1.4 -4.4 Fe-S oxidoreductase compare
Psest_0835 -1.4 -8.5 Collagenase and related proteases compare
Psest_0515 -1.4 -1.3 rare lipoprotein A compare
Psest_3973 -1.4 -1.8 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0144 -1.4 -5.0 Fe-S cluster protector protein compare
Psest_3170 -1.3 -3.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0260 -1.3 -1.2 Cell division protein compare
Psest_2566 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3843 -1.3 -6.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0810 -1.3 -4.6 uroporphyrin-III C-methyltransferase compare
Psest_0558 -1.3 -1.0 urease, beta subunit compare
Psest_1115 -1.3 -2.1 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1457 -1.3 -1.9 FOG: Ankyrin repeat compare
Psest_2293 -1.3 -1.4 hypothetical protein compare
Psest_0845 -1.3 -0.6 hypothetical protein compare
Psest_2585 -1.3 -1.2 pseudouridylate synthase I compare
Psest_3486 -1.3 -8.5 respiratory nitrate reductase, alpha subunit compare
Psest_3047 -1.3 -1.2 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3201 -1.2 -3.6 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Psest_1659 -1.2 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1843 -1.2 -1.7 Uncharacterized Fe-S protein compare
Psest_1532 -1.2 -2.1 DNA recombination-dependent growth factor C compare
Psest_2850 -1.2 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3145 -1.2 -1.0 hypothetical protein compare
Psest_0952 -1.2 -1.5 Uncharacterized conserved protein compare
Psest_1012 -1.1 -1.1 Signal transduction histidine kinase compare
Psest_3490 -1.1 -2.4 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3168 -1.1 -1.3 Molybdopterin converting factor, large subunit compare
Psest_1103 -1.1 -1.9 GTP-binding protein YchF compare
Psest_2855 -1.1 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1762 -1.1 -1.1 cytochrome c-type biogenesis protein CcmI compare
Psest_2278 -1.1 -1.7 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1661 -1.1 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3647 -1.1 -3.4 Indole-3-glycerol phosphate synthase compare
Psest_0212 -1.1 -1.2 exodeoxyribonuclease V, gamma subunit compare
Psest_1600 -1.1 -1.9 hypothetical protein compare
Psest_3479 -1.1 -3.2 molybdenum cofactor synthesis domain compare
Psest_1474 -1.1 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_3306 -1.1 -2.7 conserved hypothetical integral membrane protein compare
Psest_2718 -1.1 -1.0 hypothetical protein compare
Psest_3565 -1.1 -1.0 hypothetical protein compare
Psest_2104 -1.1 -1.0 IscR-regulated protein YhgI compare
Psest_3178 -1.1 -2.1 formyltetrahydrofolate deformylase compare
Psest_0385 -1.1 -1.8 Conserved secreted protein compare
Psest_0660 -1.1 -2.2 Methyl-accepting chemotaxis protein compare
Psest_4134 -1.0 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3045 -1.0 -1.4 Cold shock proteins compare
Psest_2066 -1.0 -1.9 ABC-type uncharacterized transport system, permease component compare
Psest_1173 -1.0 -2.0 hypothetical protein compare
Psest_1804 -1.0 -1.2 Superfamily II DNA and RNA helicases compare
Psest_1305 -1.0 -2.3 Heat shock protein compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_2681 -1.0 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_3484 -1.0 -3.0 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1663 -1.0 -1.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2268 -1.0 -2.1 Alcohol dehydrogenase, class IV compare
Psest_0823 -1.0 -2.2 Transcriptional regulators compare
Psest_0120 -1.0 -3.2 hypothetical protein compare
Psest_0836 -1.0 -3.4 Collagenase and related proteases compare
Psest_0953 -1.0 -4.4 iron-sulfur cluster-binding protein compare
Psest_1840 -1.0 -8.2 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4010 -1.0 -1.3 peroxiredoxin, OsmC subfamily compare
Psest_1357 -1.0 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3531 -1.0 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_3307 -1.0 -3.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0830 -1.0 -4.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2557 -1.0 -1.6 Protein of unknown function (DUF2474). compare
Psest_2448 -1.0 -2.3 AraC-type DNA-binding domain-containing proteins compare
Psest_0296 -0.9 -4.2 glutathione synthetase, prokaryotic compare
Psest_3014 -0.9 -1.2 cob(I)alamin adenosyltransferase compare
Psest_4044 -0.9 -1.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2892 -0.9 -1.6 Transcriptional regulator compare
Psest_3527 -0.9 -2.3 Pseudouridylate synthases, 23S RNA-specific compare
Psest_1013 -0.9 -1.1 phosphoribosylamine--glycine ligase compare
Psest_0277 -0.9 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3767 -0.9 -2.4 tyrosine recombinase XerC compare
Psest_3860 -0.9 -1.8 Predicted permeases compare
Psest_1876 -0.9 -2.0 Predicted membrane protein compare
Psest_3117 -0.9 -1.7 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2847 -0.9 -1.7 Multisubunit Na+/H+ antiporter, MnhF subunit compare
Psest_1292 -0.9 -3.0 monothiol glutaredoxin, Grx4 family compare
Psest_4178 -0.9 -1.9 hypothetical protein compare
Psest_3485 -0.9 -4.8 nitrate reductase, beta subunit compare
Psest_2714 -0.9 -1.0 7-cyano-7-deazaguanine reductase compare
Psest_1496 -0.9 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3816 -0.9 -1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_2946 -0.9 -1.2 septum site-determining protein MinD compare
Psest_3056 -0.9 -2.0 hypothetical protein compare
Psest_2544 -0.9 -3.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_2437 -0.9 -2.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0028 -0.9 -2.3 Coproporphyrinogen III oxidase compare
Psest_0310 -0.9 -1.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3305 -0.8 -3.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1879 -0.8 -1.1 Trk-type K+ transport systems, membrane components compare
Psest_1679 -0.8 -0.9 ribonuclease, Rne/Rng family compare
Psest_1783 -0.8 -1.4 Predicted transporter component compare
Psest_1602 -0.8 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3488 -0.8 -1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4201 -0.8 -1.3 general secretion pathway protein F compare
Psest_0062 -0.8 -4.5 tryptophan synthase, alpha subunit compare
Psest_3899 -0.8 -2.7 Predicted phosphoribosyltransferases compare
Psest_2945 -0.8 -0.7 septum site-determining protein MinC compare
Psest_0063 -0.8 -4.0 tryptophan synthase, beta subunit compare
Psest_4149 -0.8 -2.1 fagellar hook-basal body proteins compare
Psest_3159 -0.8 -1.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1872 -0.8 -1.4 selT/selW/selH selenoprotein domain compare
Psest_3762 -0.8 -2.0 iron donor protein CyaY compare
Psest_3115 -0.8 -2.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_4411 -0.8 -2.6 Phage terminase, small subunit compare
Psest_2177 -0.8 -1.9 Protein of unknown function (DUF1652). compare
Psest_2001 -0.8 -0.8 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0485 -0.8 -1.6 clan AA aspartic protease, TIGR02281 family compare
Psest_2645 -0.8 -2.9 Transcriptional regulator compare
Psest_2646 -0.8 -1.1 SOS regulatory protein LexA compare
Psest_0770 -0.8 -2.0 alkylphosphonate utilization operon protein PhnA compare
Psest_2621 -0.8 -2.1 TadE-like protein. compare
Psest_0998 -0.7 -1.1 poly(A) polymerase compare
Psest_3543 -0.7 -1.4 hypothetical protein compare
Psest_1916 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0417 -0.7 -0.9 Acyl-CoA dehydrogenases compare
Psest_1666 -0.7 -2.8 PilZ domain. compare
Psest_3084 -0.7 -1.2 methyltransferase, putative compare
Psest_3965 -0.7 -2.6 hypothetical protein compare
Psest_1691 -0.7 -1.6 aminodeoxychorismate lyase compare
Psest_2018 -0.7 -1.1 Uncharacterized conserved protein compare
Psest_1459 -0.7 -1.8 hypothetical protein compare
Psest_3303 -0.7 -2.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0817 -0.7 -3.4 Ethylbenzene dehydrogenase. compare
Psest_3487 -0.7 -4.0 Nitrate/nitrite transporter compare
Psest_1873 -0.7 -1.7 Predicted permease, DMT superfamily compare
Psest_2478 -0.7 -2.8 Na+/serine symporter compare
Psest_1597 -0.7 -1.9 Protein of unknown function (DUF2933). compare
Psest_2591 -0.7 -1.3 3-isopropylmalate dehydratase, large subunit compare
Psest_4128 -0.7 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2756 -0.7 -0.7 hypothetical protein compare
Psest_2424 -0.7 -1.3 K+ transport systems, NAD-binding component compare
Psest_2333 -0.7 -0.6 Protein of unknown function (DUF3359). compare
Psest_0083 -0.7 -1.3 Uncharacterized conserved protein compare
Psest_0279 -0.7 -2.2 methionine biosynthesis protein MetW compare
Psest_1997 -0.7 -1.0 6-phosphogluconolactonase compare
Psest_1073 -0.7 -2.4 TRAP-type mannitol/chloroaromatic compound transport system, small permease component compare
Psest_3100 -0.7 -3.1 RNA polymerase sigma factor RpoE compare
Psest_1989 -0.7 -2.5 Transcriptional regulators compare
Psest_0504 -0.7 -2.1 Putative effector of murein hydrolase LrgA compare
Psest_0821 -0.7 -3.9 Cytochrome D1 heme domain. compare
Psest_3489 -0.7 -3.5 hypothetical protein compare
Psest_0292 -0.7 -1.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0969 -0.7 -1.0 transcription elongation factor GreA compare
Psest_0086 -0.7 -1.5 hypothetical protein compare
Psest_0730 -0.7 -2.5 O-6-methylguanine DNA methyltransferase compare
Psest_3389 -0.7 -1.4 hypothetical protein compare
Psest_3005 -0.7 -1.2 Fructose-2,6-bisphosphatase compare
Psest_2096 -0.7 -0.9 Domain of unknown function (DUF1883). compare
Psest_1306 -0.7 -0.8 hypothetical protein compare
Psest_3521 -0.7 -2.0 H+/gluconate symporter and related permeases compare
Psest_1468 -0.7 -1.5 hypothetical protein compare
Psest_1824 -0.7 -1.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_4363 -0.7 -2.5 ATPases involved in chromosome partitioning compare
Psest_2712 -0.6 -1.6 Surface lipoprotein compare
Psest_0031 -0.6 -1.1 Uncharacterized conserved protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms