Experiment set9H20 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_0826 -3.3 -6.3 Cytochrome c compare
Psest_0827 -3.2 -10.0 Nitric oxide reductase large subunit compare
Psest_0799 -3.1 -4.5 Uncharacterized protein involved in response to NO compare
Psest_0830 -3.1 -6.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2490 -3.1 -6.6 succinyl-CoA synthetase, alpha subunit compare
Psest_2234 -3.1 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0828 -3.0 -4.1 Nitric oxide reductase activation protein compare
Psest_2491 -3.0 -4.1 succinyl-CoA synthetase, beta subunit compare
Psest_0817 -2.7 -7.3 Ethylbenzene dehydrogenase. compare
Psest_1473 -2.5 -5.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3092 -2.5 -1.7 ribonuclease III, bacterial compare
Psest_0822 -2.5 -3.3 Transcriptional regulators compare
Psest_0144 -2.5 -7.4 Fe-S cluster protector protein compare
Psest_3816 -2.5 -1.7 DNA-directed RNA polymerase, omega subunit compare
Psest_2712 -2.4 -3.3 Surface lipoprotein compare
Psest_0811 -2.4 -8.6 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_1504 -2.3 -3.5 tol-pal system protein YbgF compare
Psest_0810 -2.2 -6.0 uroporphyrin-III C-methyltransferase compare
Psest_3236 -2.2 -2.6 hypothetical protein compare
Psest_0821 -2.1 -8.2 Cytochrome D1 heme domain. compare
Psest_0969 -2.1 -2.0 transcription elongation factor GreA compare
Psest_3307 -2.1 -5.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0815 -2.1 -9.4 Cytochrome c, mono- and diheme variants compare
Psest_1656 -2.1 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3767 -2.1 -3.1 tyrosine recombinase XerC compare
Psest_3112 -2.1 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0814 -2.1 -2.0 MoxR-like ATPases compare
Psest_2766 -2.0 -1.5 hypothetical protein compare
Psest_3303 -2.0 -3.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2988 -2.0 -5.9 aspartate kinase, monofunctional class compare
Psest_0797 -2.0 -6.9 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_3384 -2.0 -6.0 glutamate 5-kinase compare
Psest_3531 -2.0 -1.6 Peptidase propeptide and YPEB domain. compare
Psest_0958 -1.9 -3.4 Oligoketide cyclase/lipid transport protein compare
Psest_0823 -1.9 -3.2 Transcriptional regulators compare
Psest_1660 -1.9 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0794 -1.9 -11.1 parallel beta-helix repeat (two copies) compare
Psest_1752 -1.9 -1.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2122 -1.9 -1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3395 -1.8 -1.7 hypothetical protein compare
Psest_1313 -1.8 -2.1 Uncharacterized conserved small protein compare
Psest_0161 -1.8 -2.3 Membrane-bound metallopeptidase compare
Psest_3766 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0796 -1.7 -2.8 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3878 -1.7 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1655 -1.7 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2651 -1.7 -1.6 DNA topoisomerase I, bacterial compare
Psest_1496 -1.7 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2945 -1.6 -1.1 septum site-determining protein MinC compare
Psest_0820 -1.6 -3.7 hypothetical protein compare
Psest_0515 -1.6 -1.1 rare lipoprotein A compare
Psest_1022 -1.6 -5.3 Thiol:disulfide interchange protein compare
Psest_3937 -1.6 -2.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_4191 -1.6 -2.1 Transcriptional regulator compare
Psest_3129 -1.6 -1.5 tyrosine recombinase XerD compare
Psest_0795 -1.6 -3.1 ABC-type multidrug transport system, ATPase component compare
Psest_0959 -1.6 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3998 -1.6 -3.5 glutamate--cysteine ligase compare
Psest_0793 -1.6 -9.7 Nitrous oxide reductase compare
Psest_3070 -1.5 -2.3 3-oxoadipyl-CoA thiolase compare
Psest_4314 -1.5 -3.5 ABC-type metal ion transport system, ATPase component compare
Psest_0415 -1.5 -2.8 dethiobiotin synthase compare
Psest_2329 -1.5 -7.6 Transcriptional regulator compare
Psest_3031 -1.5 -1.1 hypothetical protein compare
Psest_3114 -1.5 -4.2 electron transport complex, RnfABCDGE type, C subunit compare
Psest_1505 -1.5 -1.5 Organic radical activating enzymes compare
Psest_3962 -1.5 -1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3301 -1.4 -2.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_1185 -1.4 -1.9 heavy metal response regulator compare
Psest_0952 -1.4 -1.6 Uncharacterized conserved protein compare
Psest_1242 -1.4 -1.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3045 -1.4 -2.1 Cold shock proteins compare
Psest_0833 -1.4 -3.3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_3554 -1.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2590 -1.4 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3762 -1.4 -2.8 iron donor protein CyaY compare
Psest_2531 -1.3 -6.6 cytochrome c oxidase accessory protein FixG compare
Psest_0243 -1.3 -1.5 hypothetical protein compare
Psest_2067 -1.3 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3305 -1.3 -4.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1366 -1.3 -1.3 hypothetical protein compare
Psest_1231 -1.3 -4.3 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_1617 -1.3 -2.1 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3480 -1.3 -1.7 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0792 -1.3 -8.9 Regulator of nitric oxide reductase transcription compare
Psest_0508 -1.3 -4.9 gamma-glutamyl phosphate reductase compare
Psest_2748 -1.3 -1.2 Transcriptional regulator compare
Psest_3306 -1.3 -2.8 conserved hypothetical integral membrane protein compare
Psest_1945 -1.3 -2.7 hypothetical protein compare
Psest_1149 -1.2 -2.2 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_4315 -1.2 -2.1 ABC-type metal ion transport system, permease component compare
Psest_1103 -1.2 -2.0 GTP-binding protein YchF compare
Psest_1139 -1.2 -2.8 PAS domain S-box compare
Psest_2324 -1.2 -6.8 hypothetical protein compare
Psest_2325 -1.2 -4.7 alpha-L-glutamate ligase-related protein compare
Psest_2855 -1.2 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3190 -1.2 -2.9 pyruvate kinase compare
Psest_3042 -1.2 -1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_2923 -1.2 -1.8 hypothetical protein compare
Psest_1428 -1.2 -2.2 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_3938 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1679 -1.2 -1.1 ribonuclease, Rne/Rng family compare
Psest_1516 -1.2 -1.6 Uncharacterized lipoprotein compare
Psest_1532 -1.2 -1.9 DNA recombination-dependent growth factor C compare
Psest_0389 -1.2 -2.8 hypothetical protein compare
Psest_0119 -1.2 -1.5 hypothetical protein compare
Psest_3973 -1.2 -1.5 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2579 -1.1 -2.5 amidophosphoribosyltransferase compare
Psest_3784 -1.1 -1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_4088 -1.1 -2.1 Transcriptional regulators compare
Psest_4316 -1.1 -2.8 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3115 -1.1 -3.2 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0697 -1.1 -1.9 ribosomal protein L9 compare
Psest_3117 -1.1 -1.9 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1804 -1.1 -1.2 Superfamily II DNA and RNA helicases compare
Psest_2308 -1.1 -1.0 Predicted Fe-S protein compare
Psest_3323 -1.1 -2.6 ribonuclease, Rne/Rng family compare
Psest_1371 -1.1 -3.1 hypothetical protein compare
Psest_1012 -1.1 -1.2 Signal transduction histidine kinase compare
Psest_1661 -1.1 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2525 -1.1 -1.8 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0790 -1.1 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1474 -1.0 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_3573 -1.0 -2.2 dTDP-4-dehydrorhamnose reductase compare
Psest_2066 -1.0 -1.8 ABC-type uncharacterized transport system, permease component compare
Psest_0313 -1.0 -2.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0083 -1.0 -1.3 Uncharacterized conserved protein compare
Psest_0296 -1.0 -4.4 glutathione synthetase, prokaryotic compare
Psest_1888 -1.0 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3338 -1.0 -0.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1506 -1.0 -2.3 queuosine biosynthesis protein QueC compare
Psest_3853 -1.0 -1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0193 -1.0 -1.0 conserved hypothetical protein compare
Psest_2104 -1.0 -0.9 IscR-regulated protein YhgI compare
Psest_1681 -1.0 -2.1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3810 -1.0 -0.6 orotate phosphoribosyltransferase compare
Psest_3458 -1.0 -2.0 hypothetical protein compare
Psest_3188 -1.0 -2.1 hypothetical protein compare
Psest_3226 -1.0 -0.8 Predicted membrane protein compare
Psest_1691 -1.0 -1.8 aminodeoxychorismate lyase compare
Psest_3700 -1.0 -1.1 hypothetical protein compare
Psest_3304 -1.0 -2.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1292 -0.9 -3.1 monothiol glutaredoxin, Grx4 family compare
Psest_1876 -0.9 -1.9 Predicted membrane protein compare
Psest_1295 -0.9 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3177 -0.9 -1.2 hypothetical protein compare
Psest_2716 -0.9 -1.7 ABC-type multidrug transport system, ATPase component compare
Psest_1879 -0.9 -1.0 Trk-type K+ transport systems, membrane components compare
Psest_2850 -0.9 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1602 -0.9 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2088 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1227 -0.9 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_3413 -0.9 -1.6 hypothetical protein compare
Psest_2864 -0.9 -1.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3159 -0.9 -1.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_4177 -0.9 -1.3 flagellar biosynthetic protein FliP compare
Psest_1479 -0.9 -2.0 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_4390 -0.9 -2.7 hypothetical protein compare
Psest_1663 -0.9 -1.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2177 -0.9 -2.2 Protein of unknown function (DUF1652). compare
Psest_0836 -0.9 -2.9 Collagenase and related proteases compare
Psest_2460 -0.9 -1.2 hypothetical protein compare
Psest_1037 -0.9 -1.2 acetolactate synthase, small subunit compare
Psest_0021 -0.9 -2.2 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_3899 -0.9 -2.6 Predicted phosphoribosyltransferases compare
Psest_2768 -0.8 -1.3 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_2526 -0.8 -2.9 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1659 -0.8 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2645 -0.8 -2.5 Transcriptional regulator compare
Psest_3482 -0.8 -2.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3793 -0.8 -2.9 D-alanine dehydrogenase (EC 1.4.99.-) (from data) compare
Psest_2266 -0.8 -1.3 hypothetical protein compare
Psest_3754 -0.8 -2.2 Uncharacterized protein involved in response to NO compare
Psest_4010 -0.8 -1.1 peroxiredoxin, OsmC subfamily compare
Psest_0449 -0.8 -4.9 Glutamine synthetase adenylyltransferase compare
Psest_1013 -0.8 -1.1 phosphoribosylamine--glycine ligase compare
Psest_3690 -0.8 -2.4 Acyl carrier protein compare
Psest_4082 -0.8 -1.8 hypothetical protein compare
Psest_1204 -0.8 -1.2 Transcriptional regulators compare
Psest_2566 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_0546 -0.8 -2.6 hypothetical protein compare
Psest_1870 -0.8 -0.9 Transcriptional regulators compare
Psest_1619 -0.8 -2.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_1868 -0.8 -2.0 yecA family protein compare
Psest_2288 -0.8 -1.6 trigger factor compare
Psest_0100 -0.8 -1.9 phosphonate ABC transporter, ATP-binding protein compare
Psest_3113 -0.8 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0257 -0.8 -1.5 Predicted Zn-dependent peptidases compare
Psest_0209 -0.8 -1.3 membrane protein AbrB duplication compare
Psest_1657 -0.8 -0.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0835 -0.8 -5.2 Collagenase and related proteases compare
Psest_4078 -0.8 -1.0 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3813 -0.8 -3.8 ribonuclease PH compare
Psest_0813 -0.8 -2.4 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0660 -0.8 -1.6 Methyl-accepting chemotaxis protein compare
Psest_0259 -0.8 -0.7 cell division ATP-binding protein FtsE compare
Psest_4044 -0.8 -1.2 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2624 -0.8 -1.5 hypothetical protein compare
Psest_4197 -0.7 -1.3 general secretion pathway protein J compare
Psest_0953 -0.7 -3.4 iron-sulfur cluster-binding protein compare


Specific Phenotypes

For 6 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms