Experiment set9H19 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_0826 -3.5 -6.2 Cytochrome c compare
Psest_2491 -3.5 -3.4 succinyl-CoA synthetase, beta subunit compare
Psest_3301 -3.3 -3.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0830 -3.1 -6.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2490 -3.1 -6.2 succinyl-CoA synthetase, alpha subunit compare
Psest_0827 -3.1 -10.6 Nitric oxide reductase large subunit compare
Psest_2333 -3.1 -1.6 Protein of unknown function (DUF3359). compare
Psest_0821 -3.0 -9.3 Cytochrome D1 heme domain. compare
Psest_0799 -3.0 -4.9 Uncharacterized protein involved in response to NO compare
Psest_0814 -3.0 -2.0 MoxR-like ATPases compare
Psest_0828 -2.9 -4.8 Nitric oxide reductase activation protein compare
Psest_0811 -2.9 -8.6 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_3762 -2.9 -3.9 iron donor protein CyaY compare
Psest_2234 -2.9 -6.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2101 -2.8 -2.6 hypothetical protein compare
Psest_1473 -2.8 -5.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1306 -2.7 -1.8 hypothetical protein compare
Psest_0822 -2.6 -3.5 Transcriptional regulators compare
Psest_0144 -2.5 -7.2 Fe-S cluster protector protein compare
Psest_0810 -2.5 -6.4 uroporphyrin-III C-methyltransferase compare
Psest_0815 -2.5 -9.9 Cytochrome c, mono- and diheme variants compare
Psest_4316 -2.3 -4.1 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0817 -2.3 -6.9 Ethylbenzene dehydrogenase. compare
Psest_1082 -2.2 -2.5 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0823 -2.2 -3.2 Transcriptional regulators compare
Psest_0795 -2.2 -3.4 ABC-type multidrug transport system, ATPase component compare
Psest_1505 -2.1 -2.0 Organic radical activating enzymes compare
Psest_1656 -2.1 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2325 -2.1 -6.2 alpha-L-glutamate ligase-related protein compare
Psest_4191 -2.0 -2.3 Transcriptional regulator compare
Psest_2988 -2.0 -6.4 aspartate kinase, monofunctional class compare
Psest_3305 -1.9 -4.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4315 -1.9 -2.8 ABC-type metal ion transport system, permease component compare
Psest_0958 -1.9 -3.4 Oligoketide cyclase/lipid transport protein compare
Psest_0164 -1.9 -1.4 Glutaredoxin, GrxC family compare
Psest_0260 -1.9 -1.3 Cell division protein compare
Psest_2370 -1.9 -2.4 Protein of unknown function (DUF1652). compare
Psest_3092 -1.9 -1.8 ribonuclease III, bacterial compare
Psest_0601 -1.9 -1.9 hypothetical protein compare
Psest_3304 -1.8 -3.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2712 -1.8 -3.1 Surface lipoprotein compare
Psest_0797 -1.7 -6.4 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1295 -1.7 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0959 -1.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2651 -1.7 -1.6 DNA topoisomerase I, bacterial compare
Psest_3307 -1.7 -4.9 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1655 -1.7 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2945 -1.6 -1.1 septum site-determining protein MinC compare
Psest_0794 -1.6 -10.1 parallel beta-helix repeat (two copies) compare
Psest_0066 -1.6 -2.1 Protein of unknown function (DUF3060). compare
Psest_1322 -1.5 -2.0 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3384 -1.5 -5.5 glutamate 5-kinase compare
Psest_2324 -1.5 -8.0 hypothetical protein compare
Psest_0511 -1.5 -1.7 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3112 -1.5 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2872 -1.5 -1.0 protein RecA compare
Psest_0508 -1.4 -5.1 gamma-glutamyl phosphate reductase compare
Psest_1522 -1.4 -1.9 hypothetical protein compare
Psest_1022 -1.4 -4.8 Thiol:disulfide interchange protein compare
Psest_2104 -1.4 -0.9 IscR-regulated protein YhgI compare
Psest_0515 -1.4 -1.3 rare lipoprotein A compare
Psest_1506 -1.4 -2.9 queuosine biosynthesis protein QueC compare
Psest_3236 -1.4 -2.2 hypothetical protein compare
Psest_3303 -1.4 -3.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0813 -1.4 -3.4 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_0842 -1.4 -1.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_2906 -1.4 -2.5 tRNA_Thr_CGT compare
Psest_1056 -1.3 -1.6 2-isopropylmalate synthase, bacterial type compare
Psest_0998 -1.3 -1.5 poly(A) polymerase compare
Psest_0793 -1.3 -8.5 Nitrous oxide reductase compare
Psest_2419 -1.3 -3.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0310 -1.3 -1.7 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3937 -1.3 -1.6 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0796 -1.3 -2.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_0401 -1.3 -2.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2579 -1.3 -2.7 amidophosphoribosyltransferase compare
Psest_4314 -1.3 -3.1 ABC-type metal ion transport system, ATPase component compare
Psest_0833 -1.3 -3.1 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_2088 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3115 -1.3 -3.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2123 -1.2 -1.4 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1999 -1.2 -1.0 pseudouridine synthase compare
Psest_4406 -1.2 -1.4 hypothetical protein compare
Psest_1292 -1.2 -3.7 monothiol glutaredoxin, Grx4 family compare
Psest_1231 -1.2 -4.0 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_1087 -1.2 -0.8 uncharacterized peroxidase-related enzyme compare
Psest_0835 -1.2 -7.4 Collagenase and related proteases compare
Psest_0740 -1.2 -1.6 Transcriptional regulator compare
Psest_1659 -1.2 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0792 -1.2 -8.2 Regulator of nitric oxide reductase transcription compare
Psest_0186 -1.2 -2.7 Protein-disulfide isomerase compare
Psest_3114 -1.2 -3.7 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3973 -1.2 -1.5 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0558 -1.2 -0.8 urease, beta subunit compare
Psest_3573 -1.2 -2.6 dTDP-4-dehydrorhamnose reductase compare
Psest_2798 -1.2 -1.8 Truncated hemoglobins compare
Psest_2329 -1.1 -6.2 Transcriptional regulator compare
Psest_0660 -1.1 -2.3 Methyl-accepting chemotaxis protein compare
Psest_3084 -1.1 -1.4 methyltransferase, putative compare
Psest_3190 -1.1 -3.0 pyruvate kinase compare
Psest_2907 -1.1 -1.0 Protein of unknown function (DUF3618). compare
Psest_1139 -1.1 -2.8 PAS domain S-box compare
Psest_0836 -1.1 -3.6 Collagenase and related proteases compare
Psest_1282 -1.1 -1.9 Amidases related to nicotinamidase compare
Psest_1772 -1.1 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0696 -1.1 -3.2 hypothetical protein compare
Psest_3188 -1.1 -2.8 hypothetical protein compare
Psest_0820 -1.1 -2.7 hypothetical protein compare
Psest_2096 -1.1 -1.7 Domain of unknown function (DUF1883). compare
Psest_0697 -1.1 -1.7 ribosomal protein L9 compare
Psest_4298 -1.1 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2018 -1.1 -1.4 Uncharacterized conserved protein compare
Psest_1661 -1.1 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3045 -1.1 -1.7 Cold shock proteins compare
Psest_1504 -1.0 -2.3 tol-pal system protein YbgF compare
Psest_3129 -1.0 -1.2 tyrosine recombinase XerD compare
Psest_1013 -1.0 -1.0 phosphoribosylamine--glycine ligase compare
Psest_3306 -1.0 -2.5 conserved hypothetical integral membrane protein compare
Psest_2531 -1.0 -5.4 cytochrome c oxidase accessory protein FixG compare
Psest_0296 -1.0 -4.3 glutathione synthetase, prokaryotic compare
Psest_0114 -1.0 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1731 -1.0 -1.4 flagellar biosynthetic protein FliO compare
Psest_1474 -1.0 -1.2 phosphoribosylaminoimidazole synthetase compare
Psest_1945 -1.0 -2.3 hypothetical protein compare
Psest_4049 -1.0 -1.2 hypothetical protein compare
Psest_3056 -1.0 -2.1 hypothetical protein compare
Psest_1308 -1.0 -2.6 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3938 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3226 -1.0 -0.9 Predicted membrane protein compare
Psest_0207 -1.0 -2.0 hypothetical protein compare
Psest_3810 -1.0 -0.6 orotate phosphoribosyltransferase compare
Psest_1804 -1.0 -1.2 Superfamily II DNA and RNA helicases compare
Psest_1226 -1.0 -1.6 hypothetical protein compare
Psest_1227 -1.0 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_2901 -0.9 -1.0 hypothetical protein compare
Psest_1602 -0.9 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2992 -0.9 -2.6 Uncharacterized conserved protein compare
Psest_1733 -0.9 -2.1 flagellar biosynthetic protein FliQ compare
Psest_4405 -0.9 -1.4 hypothetical protein compare
Psest_3881 -0.9 -1.2 hypothetical protein compare
Psest_0953 -0.9 -3.9 iron-sulfur cluster-binding protein compare
Psest_3117 -0.9 -1.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0277 -0.9 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0155 -0.9 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_4142 -0.9 -0.8 hypothetical protein compare
Psest_0954 -0.9 -3.0 Fe-S oxidoreductase compare
Psest_2454 -0.9 -1.4 Rhodanese-related sulfurtransferase compare
Psest_1663 -0.9 -1.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3843 -0.9 -4.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0869 -0.9 -1.4 Acetyltransferase (isoleucine patch superfamily) compare
Psest_2229 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2481 -0.9 -2.7 hypothetical protein compare
Psest_3458 -0.9 -1.6 hypothetical protein compare
Psest_0064 -0.9 -1.9 Transcriptional regulator compare
Psest_2037 -0.9 -2.2 uroporphyrin-III C-methyltransferase compare
Psest_0449 -0.9 -5.2 Glutamine synthetase adenylyltransferase compare
Psest_0722 -0.9 -2.4 Predicted ATPase compare
Psest_2748 -0.9 -0.8 Transcriptional regulator compare
Psest_4088 -0.9 -1.8 Transcriptional regulators compare
Psest_0193 -0.9 -1.0 conserved hypothetical protein compare
Psest_3921 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_4043 -0.9 -0.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2122 -0.8 -0.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3200 -0.8 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_2566 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3377 -0.8 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0969 -0.8 -1.1 transcription elongation factor GreA compare
Psest_1012 -0.8 -1.2 Signal transduction histidine kinase compare
Psest_2591 -0.8 -1.4 3-isopropylmalate dehydratase, large subunit compare
Psest_2716 -0.8 -1.2 ABC-type multidrug transport system, ATPase component compare
Psest_3113 -0.8 -1.1 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2083 -0.8 -2.2 Putative sterol carrier protein compare
Psest_1496 -0.8 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0809 -0.8 -3.5 Cytochrome c, mono- and diheme variants compare
Psest_3322 -0.8 -6.1 TIGR02099 family protein compare
Psest_3400 -0.8 -0.7 Copper resistance protein D. compare
Psest_3395 -0.8 -0.9 hypothetical protein compare
Psest_3024 -0.8 -2.7 cytochrome d oxidase, subunit II (cydB) compare
Psest_2793 -0.8 -1.7 hypothetical protein compare
Psest_2530 -0.8 -2.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3998 -0.8 -2.6 glutamate--cysteine ligase compare
Psest_3017 -0.8 -2.2 Predicted phosphohydrolases compare
Psest_4178 -0.8 -1.7 hypothetical protein compare
Psest_2285 -0.8 -1.1 ATP-dependent protease La compare
Psest_1516 -0.8 -1.1 Uncharacterized lipoprotein compare
Psest_1872 -0.8 -1.3 selT/selW/selH selenoprotein domain compare
Psest_0993 -0.8 -3.2 Glucose-6-phosphate isomerase compare
Psest_0837 -0.8 -1.2 Putative lipid carrier protein compare
Psest_2288 -0.8 -1.6 trigger factor compare
Psest_2613 -0.8 -1.0 hypothetical protein compare
Psest_3296 -0.8 -1.2 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2924 -0.8 -2.3 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0057 -0.8 -1.8 Predicted transcriptional regulators compare
Psest_1563 -0.8 -1.4 Protein of unknown function (DUF548). compare
Psest_2067 -0.8 -0.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1752 -0.8 -0.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_4119 -0.7 -2.6 hypothetical protein compare
Psest_3987 -0.7 -3.0 Nitroreductase compare
Psest_2953 -0.7 -0.8 Histone acetyltransferase compare
Psest_2146 -0.7 -2.3 Transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms