Experiment set9H18 for Pseudomonas stutzeri RCH2

Compare to:

Nitrite/ lactate media with Nitrite 20mM

200 most important genes:

  gene name fitness t score description  
Psest_0826 -3.7 -5.7 Cytochrome c compare
Psest_0828 -3.6 -4.2 Nitric oxide reductase activation protein compare
Psest_2490 -3.1 -6.3 succinyl-CoA synthetase, alpha subunit compare
Psest_2491 -3.0 -4.1 succinyl-CoA synthetase, beta subunit compare
Psest_0827 -3.0 -10.1 Nitric oxide reductase large subunit compare
Psest_0814 -2.9 -2.0 MoxR-like ATPases compare
Psest_0830 -2.9 -6.6 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_2234 -2.8 -6.3 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3092 -2.5 -1.7 ribonuclease III, bacterial compare
Psest_0823 -2.5 -3.4 Transcriptional regulators compare
Psest_1473 -2.4 -5.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0144 -2.2 -5.9 Fe-S cluster protector protein compare
Psest_0811 -2.2 -8.8 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_2712 -2.1 -3.5 Surface lipoprotein compare
Psest_3304 -2.1 -3.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0969 -2.1 -2.0 transcription elongation factor GreA compare
Psest_0821 -2.1 -8.0 Cytochrome D1 heme domain. compare
Psest_1656 -2.1 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3306 -2.1 -3.9 conserved hypothetical integral membrane protein compare
Psest_2988 -2.1 -6.5 aspartate kinase, monofunctional class compare
Psest_0958 -2.0 -3.3 Oligoketide cyclase/lipid transport protein compare
Psest_2899 -2.0 -1.9 hypothetical protein compare
Psest_3117 -2.0 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1920 -2.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0810 -2.0 -5.8 uroporphyrin-III C-methyltransferase compare
Psest_0822 -1.9 -3.2 Transcriptional regulators compare
Psest_4191 -1.9 -1.8 Transcriptional regulator compare
Psest_3113 -1.9 -2.2 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1306 -1.9 -1.8 hypothetical protein compare
Psest_3998 -1.9 -3.6 glutamate--cysteine ligase compare
Psest_2581 -1.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_3400 -1.9 -1.2 Copper resistance protein D. compare
Psest_0817 -1.8 -6.3 Ethylbenzene dehydrogenase. compare
Psest_3112 -1.8 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_4316 -1.8 -3.6 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_0795 -1.8 -3.2 ABC-type multidrug transport system, ATPase component compare
Psest_0508 -1.8 -6.3 gamma-glutamyl phosphate reductase compare
Psest_0952 -1.8 -1.7 Uncharacterized conserved protein compare
Psest_0575 -1.8 -1.3 HrpA-like helicases compare
Psest_0815 -1.7 -8.8 Cytochrome c, mono- and diheme variants compare
Psest_3226 -1.7 -1.3 Predicted membrane protein compare
Psest_0820 -1.7 -3.6 hypothetical protein compare
Psest_1295 -1.7 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0794 -1.7 -10.6 parallel beta-helix repeat (two copies) compare
Psest_3938 -1.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1804 -1.7 -1.1 Superfamily II DNA and RNA helicases compare
Psest_1496 -1.7 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_2325 -1.6 -5.3 alpha-L-glutamate ligase-related protein compare
Psest_4314 -1.6 -3.5 ABC-type metal ion transport system, ATPase component compare
Psest_0515 -1.6 -1.1 rare lipoprotein A compare
Psest_2579 -1.6 -2.2 amidophosphoribosyltransferase compare
Psest_3937 -1.6 -2.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0066 -1.6 -2.1 Protein of unknown function (DUF3060). compare
Psest_0799 -1.6 -2.9 Uncharacterized protein involved in response to NO compare
Psest_3305 -1.6 -4.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0737 -1.6 -1.1 Cu(I)-responsive transcriptional regulator compare
Psest_3303 -1.6 -3.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2718 -1.5 -1.4 hypothetical protein compare
Psest_1655 -1.5 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1204 -1.5 -2.0 Transcriptional regulators compare
Psest_1762 -1.5 -2.0 cytochrome c-type biogenesis protein CcmI compare
Psest_3384 -1.5 -5.4 glutamate 5-kinase compare
Psest_3031 -1.5 -1.1 hypothetical protein compare
Psest_0793 -1.5 -9.6 Nitrous oxide reductase compare
Psest_3185 -1.5 -1.7 MoxR-like ATPases compare
Psest_2923 -1.5 -2.0 hypothetical protein compare
Psest_3129 -1.5 -1.4 tyrosine recombinase XerD compare
Psest_3550 -1.5 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1428 -1.5 -2.5 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_1022 -1.4 -4.9 Thiol:disulfide interchange protein compare
Psest_3762 -1.4 -2.8 iron donor protein CyaY compare
Psest_1532 -1.4 -2.3 DNA recombination-dependent growth factor C compare
Psest_3236 -1.4 -2.3 hypothetical protein compare
Psest_1087 -1.4 -1.3 uncharacterized peroxidase-related enzyme compare
Psest_0797 -1.4 -6.0 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_2104 -1.4 -0.9 IscR-regulated protein YhgI compare
Psest_1824 -1.4 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3115 -1.4 -3.5 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1657 -1.4 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0385 -1.3 -1.9 Conserved secreted protein compare
Psest_2333 -1.3 -1.0 Protein of unknown function (DUF3359). compare
Psest_4088 -1.3 -2.3 Transcriptional regulators compare
Psest_1292 -1.3 -3.8 monothiol glutaredoxin, Grx4 family compare
Psest_0161 -1.3 -2.0 Membrane-bound metallopeptidase compare
Psest_3843 -1.3 -5.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2046 -1.3 -3.1 hypothetical protein compare
Psest_1504 -1.3 -2.6 tol-pal system protein YbgF compare
Psest_2018 -1.3 -1.4 Uncharacterized conserved protein compare
Psest_2324 -1.2 -7.0 hypothetical protein compare
Psest_2756 -1.2 -1.1 hypothetical protein compare
Psest_3237 -1.2 -1.4 hypothetical protein compare
Psest_2855 -1.2 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0796 -1.2 -2.4 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_1468 -1.2 -2.6 hypothetical protein compare
Psest_2437 -1.2 -2.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_0346 -1.2 -1.9 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0165 -1.2 -2.1 protein-export chaperone SecB compare
Psest_3114 -1.2 -3.9 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0260 -1.2 -1.1 Cell division protein compare
Psest_1679 -1.2 -1.1 ribonuclease, Rne/Rng family compare
Psest_2613 -1.2 -1.3 hypothetical protein compare
Psest_1231 -1.2 -3.9 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_3545 -1.2 -2.5 clan AA aspartic protease, TIGR02281 family compare
Psest_4315 -1.2 -2.1 ABC-type metal ion transport system, permease component compare
Psest_3045 -1.1 -1.8 Cold shock proteins compare
Psest_0313 -1.1 -2.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2945 -1.1 -1.0 septum site-determining protein MinC compare
Psest_2424 -1.1 -1.4 K+ transport systems, NAD-binding component compare
Psest_2667 -1.1 -2.3 Uncharacterized protein involved in propionate catabolism compare
Psest_0792 -1.1 -8.1 Regulator of nitric oxide reductase transcription compare
Psest_0697 -1.1 -1.8 ribosomal protein L9 compare
Psest_1013 -1.1 -0.8 phosphoribosylamine--glycine ligase compare
Psest_3502 -1.1 -1.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_2531 -1.1 -5.7 cytochrome c oxidase accessory protein FixG compare
Psest_2864 -1.1 -2.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2907 -1.1 -1.0 Protein of unknown function (DUF3618). compare
Psest_0725 -1.1 -1.4 Negative regulator of beta-lactamase expression compare
Psest_1323 -1.1 -2.3 Hydroxypyruvate isomerase compare
Psest_2001 -1.1 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2585 -1.1 -0.8 pseudouridylate synthase I compare
Psest_3890 -1.1 -1.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3767 -1.1 -2.4 tyrosine recombinase XerC compare
Psest_2329 -1.1 -5.8 Transcriptional regulator compare
Psest_2308 -1.1 -1.0 Predicted Fe-S protein compare
Psest_2357 -1.1 -1.6 Short-chain dehydrogenases of various substrate specificities compare
Psest_1474 -1.0 -1.0 phosphoribosylaminoimidazole synthetase compare
Psest_3565 -1.0 -0.9 hypothetical protein compare
Psest_3573 -1.0 -2.2 dTDP-4-dehydrorhamnose reductase compare
Psest_0954 -1.0 -2.8 Fe-S oxidoreductase compare
Psest_1659 -1.0 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0813 -1.0 -2.8 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Psest_1752 -1.0 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3537 -1.0 -3.3 hypothetical protein compare
Psest_0660 -1.0 -1.5 Methyl-accepting chemotaxis protein compare
Psest_3307 -1.0 -3.3 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2342 -1.0 -3.2 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_3395 -0.9 -0.7 hypothetical protein compare
Psest_2229 -0.9 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3301 -0.9 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0296 -0.9 -4.0 glutathione synthetase, prokaryotic compare
Psest_1602 -0.9 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1999 -0.9 -0.8 pseudouridine synthase compare
Psest_3159 -0.9 -1.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1516 -0.9 -1.2 Uncharacterized lipoprotein compare
Psest_2590 -0.9 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0417 -0.9 -0.9 Acyl-CoA dehydrogenases compare
Psest_1242 -0.9 -1.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0257 -0.9 -1.7 Predicted Zn-dependent peptidases compare
Psest_1012 -0.9 -1.2 Signal transduction histidine kinase compare
Psest_1366 -0.9 -0.9 hypothetical protein compare
Psest_2651 -0.9 -1.3 DNA topoisomerase I, bacterial compare
Psest_3690 -0.9 -2.2 Acyl carrier protein compare
Psest_4243 -0.9 -1.1 type VI secretion lipoprotein, VC_A0113 family compare
Psest_2860 -0.9 -2.1 hypothetical protein compare
Psest_2539 -0.9 -1.7 adenine phosphoribosyltransferase compare
Psest_1056 -0.9 -0.7 2-isopropylmalate synthase, bacterial type compare
Psest_2061 -0.9 -2.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_2983 -0.9 -1.7 hypothetical protein compare
Psest_0078 -0.9 -0.8 hypothetical protein compare
Psest_0779 -0.9 -2.3 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_1227 -0.9 -1.6 Predicted SAM-dependent methyltransferase compare
Psest_0549 -0.8 -2.6 Predicted acetyltransferase compare
Psest_0655 -0.8 -1.3 Chemotaxis signal transduction protein compare
Psest_2798 -0.8 -1.5 Truncated hemoglobins compare
Psest_1731 -0.8 -1.2 flagellar biosynthetic protein FliO compare
Psest_2872 -0.8 -0.8 protein RecA compare
Psest_1661 -0.8 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0503 -0.8 -1.1 Acyl dehydratase compare
Psest_2120 -0.8 -1.4 Transcriptional regulator compare
Psest_1878 -0.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_1176 -0.8 -1.6 Urea transporter compare
Psest_0835 -0.8 -5.2 Collagenase and related proteases compare
Psest_1952 -0.8 -2.1 hypothetical protein compare
Psest_1518 -0.8 -0.9 tRNA_Ser_CGA compare
Psest_0097 -0.8 -1.2 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3816 -0.8 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_3296 -0.8 -1.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_1466 -0.8 -1.7 transcriptional regulator, Spx/MgsR family compare
Psest_0449 -0.8 -4.6 Glutamine synthetase adenylyltransferase compare
Psest_2605 -0.8 -1.4 transcriptional activator RfaH compare
Psest_3339 -0.8 -1.9 Signal transduction histidine kinase compare
Psest_0243 -0.8 -1.0 hypothetical protein compare
Psest_2136 -0.8 -4.1 Predicted homoserine dehydrogenase compare
Psest_3365 -0.8 -2.3 Predicted membrane protein compare
Psest_1843 -0.8 -1.1 Uncharacterized Fe-S protein compare
Psest_3902 -0.8 -2.0 hypothetical protein compare
Psest_0187 -0.8 -2.1 Metal-dependent hydrolase compare
Psest_3145 -0.8 -0.7 hypothetical protein compare
Psest_3270 -0.8 -1.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0959 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_4044 -0.8 -1.1 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2946 -0.8 -1.2 septum site-determining protein MinD compare
Psest_1111 -0.7 -1.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_3936 -0.7 -1.6 ATP-dependent protease HslVU, peptidase subunit compare
Psest_0362 -0.7 -2.1 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_3810 -0.7 -0.6 orotate phosphoribosyltransferase compare
Psest_0212 -0.7 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_3433 -0.7 -2.9 ATP-binding cassette protein, ChvD family compare
Psest_2463 -0.7 -2.1 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_0833 -0.7 -2.0 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare


Specific Phenotypes

For 6 genes in this experiment

For anaerobic Sodium nitrite in Pseudomonas stutzeri RCH2

For anaerobic Sodium nitrite across organisms