Experiment set9H15 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 250mM

200 most important genes:

  gene name fitness t score description  
Psest_0115 -4.0 -2.1 Predicted integral membrane protein compare
Psest_3960 -3.4 -2.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3479 -3.2 -4.7 molybdenum cofactor synthesis domain compare
Psest_1473 -3.1 -4.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0828 -3.1 -4.2 Nitric oxide reductase activation protein compare
Psest_3113 -2.9 -2.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2234 -2.7 -6.8 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3484 -2.7 -4.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_4310 -2.7 -1.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0508 -2.6 -6.7 gamma-glutamyl phosphate reductase compare
Psest_1115 -2.4 -2.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0799 -2.4 -3.6 Uncharacterized protein involved in response to NO compare
Psest_3170 -2.2 -4.2 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1388 -2.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1961 -2.1 -7.6 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3486 -2.1 -11.0 respiratory nitrate reductase, alpha subunit compare
Psest_3485 -2.1 -8.0 nitrate reductase, beta subunit compare
Psest_0827 -2.1 -9.6 Nitric oxide reductase large subunit compare
Psest_1656 -2.1 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1505 -2.1 -1.9 Organic radical activating enzymes compare
Psest_3301 -2.0 -2.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0814 -2.0 -1.9 MoxR-like ATPases compare
Psest_0144 -2.0 -6.1 Fe-S cluster protector protein compare
Psest_2714 -2.0 -1.3 7-cyano-7-deazaguanine reductase compare
Psest_2088 -1.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0511 -1.9 -1.8 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0826 -1.9 -5.5 Cytochrome c compare
Psest_3384 -1.9 -5.5 glutamate 5-kinase compare
Psest_1660 -1.8 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3488 -1.8 -2.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1306 -1.8 -1.7 hypothetical protein compare
Psest_3247 -1.8 -1.6 Uncharacterized membrane protein compare
Psest_3168 -1.7 -1.6 Molybdopterin converting factor, large subunit compare
Psest_1511 -1.7 -3.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2899 -1.7 -1.2 hypothetical protein compare
Psest_3000 -1.7 -5.1 molybdate ABC transporter, permease protein compare
Psest_2579 -1.6 -1.9 amidophosphoribosyltransferase compare
Psest_3565 -1.6 -1.3 hypothetical protein compare
Psest_1496 -1.6 -1.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_3700 -1.6 -1.4 hypothetical protein compare
Psest_0958 -1.6 -3.3 Oligoketide cyclase/lipid transport protein compare
Psest_3483 -1.6 -4.4 respiratory nitrate reductase, gamma subunit compare
Psest_3767 -1.6 -2.9 tyrosine recombinase XerC compare
Psest_3489 -1.6 -6.2 hypothetical protein compare
Psest_2424 -1.6 -2.1 K+ transport systems, NAD-binding component compare
Psest_2981 -1.5 -1.7 sodium pump decarboxylases, gamma subunit compare
Psest_1870 -1.5 -1.4 Transcriptional regulators compare
Psest_1295 -1.5 -2.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3490 -1.5 -2.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_1506 -1.5 -2.8 queuosine biosynthesis protein QueC compare
Psest_3129 -1.5 -1.4 tyrosine recombinase XerD compare
Psest_1162 -1.4 -2.0 Spermidine synthase compare
Psest_3377 -1.4 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1974 -1.4 -2.5 integration host factor, alpha subunit compare
Psest_0114 -1.4 -2.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1724 -1.4 -2.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1655 -1.4 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_3998 -1.4 -3.2 glutamate--cysteine ligase compare
Psest_1657 -1.3 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2329 -1.3 -6.8 Transcriptional regulator compare
Psest_0998 -1.3 -1.5 poly(A) polymerase compare
Psest_0060 -1.3 -2.1 Predicted Fe-S protein compare
Psest_3647 -1.3 -3.3 Indole-3-glycerol phosphate synthase compare
Psest_2651 -1.3 -1.7 DNA topoisomerase I, bacterial compare
Psest_4314 -1.3 -2.9 ABC-type metal ion transport system, ATPase component compare
Psest_2248 -1.3 -2.2 Predicted transcriptional regulators compare
Psest_2712 -1.3 -2.7 Surface lipoprotein compare
Psest_2999 -1.3 -3.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_0062 -1.2 -5.0 tryptophan synthase, alpha subunit compare
Psest_1249 -1.2 -2.9 serine O-acetyltransferase compare
Psest_0845 -1.2 -0.6 hypothetical protein compare
Psest_2681 -1.2 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2001 -1.2 -1.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_4316 -1.2 -2.6 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3850 -1.2 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0853 -1.2 -2.5 6-phosphogluconolactonase compare
Psest_1659 -1.2 -0.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0277 -1.2 -1.0 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0296 -1.2 -4.2 glutathione synthetase, prokaryotic compare
Psest_0632 -1.1 -2.4 hypothetical protein compare
Psest_2490 -1.1 -4.8 succinyl-CoA synthetase, alpha subunit compare
Psest_3991 -1.1 -1.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1532 -1.1 -1.8 DNA recombination-dependent growth factor C compare
Psest_2525 -1.1 -1.8 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1058 -1.1 -1.6 ribosomal-protein-alanine acetyltransferase compare
Psest_2585 -1.1 -1.0 pseudouridylate synthase I compare
Psest_0393 -1.1 -3.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0835 -1.1 -6.7 Collagenase and related proteases compare
Psest_3480 -1.1 -1.5 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_4098 -1.1 -1.8 Superfamily I DNA and RNA helicases compare
Psest_3014 -1.1 -1.4 cob(I)alamin adenosyltransferase compare
Psest_3047 -1.1 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2667 -1.1 -2.2 Uncharacterized protein involved in propionate catabolism compare
Psest_1804 -1.1 -1.2 Superfamily II DNA and RNA helicases compare
Psest_0334 -1.1 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3754 -1.1 -2.5 Uncharacterized protein involved in response to NO compare
Psest_3482 -1.1 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_1661 -1.1 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1012 -1.1 -1.0 Signal transduction histidine kinase compare
Psest_1910 -1.1 -1.8 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_3092 -1.1 -1.3 ribonuclease III, bacterial compare
Psest_3236 -1.0 -1.8 hypothetical protein compare
Psest_0063 -1.0 -4.4 tryptophan synthase, beta subunit compare
Psest_2988 -1.0 -3.6 aspartate kinase, monofunctional class compare
Psest_3060 -1.0 -1.5 hypothetical protein compare
Psest_4406 -1.0 -1.0 hypothetical protein compare
Psest_2285 -1.0 -1.2 ATP-dependent protease La compare
Psest_1510 -1.0 -1.9 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2946 -1.0 -1.2 septum site-determining protein MinD compare
Psest_0558 -1.0 -0.7 urease, beta subunit compare
Psest_4363 -1.0 -3.2 ATPases involved in chromosome partitioning compare
Psest_1428 -1.0 -1.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_0954 -1.0 -3.2 Fe-S oxidoreductase compare
Psest_1474 -1.0 -1.1 phosphoribosylaminoimidazole synthetase compare
Psest_4274 -1.0 -1.5 hypothetical protein compare
Psest_1483 -1.0 -2.8 hypothetical protein compare
Psest_3573 -1.0 -2.0 dTDP-4-dehydrorhamnose reductase compare
Psest_0740 -1.0 -1.3 Transcriptional regulator compare
Psest_1241 -1.0 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_3398 -1.0 -2.2 large conductance mechanosensitive channel protein compare
Psest_3070 -0.9 -1.3 3-oxoadipyl-CoA thiolase compare
Psest_1663 -0.9 -1.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3865 -0.9 -1.8 Predicted integral membrane protein (DUF2269). compare
Psest_1204 -0.9 -1.3 Transcriptional regulators compare
Psest_3159 -0.9 -1.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3203 -0.9 -2.0 hypothetical protein compare
Psest_2855 -0.9 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3306 -0.9 -2.1 conserved hypothetical integral membrane protein compare
Psest_1349 -0.9 -1.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1691 -0.9 -1.7 aminodeoxychorismate lyase compare
Psest_0466 -0.9 -1.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1103 -0.9 -1.6 GTP-binding protein YchF compare
Psest_3810 -0.9 -0.6 orotate phosphoribosyltransferase compare
Psest_3456 -0.9 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_4298 -0.9 -0.7 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2591 -0.9 -1.5 3-isopropylmalate dehydratase, large subunit compare
Psest_3112 -0.9 -1.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_4319 -0.9 -2.4 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_4191 -0.8 -1.4 Transcriptional regulator compare
Psest_3692 -0.8 -2.0 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0061 -0.8 -1.5 hypothetical protein compare
Psest_1195 -0.8 -1.5 xanthine permease compare
Psest_2863 -0.8 -2.4 Transcriptional regulator compare
Psest_2055 -0.8 -2.3 cytochrome c550 (from data) compare
Psest_0725 -0.8 -1.1 Negative regulator of beta-lactamase expression compare
Psest_0357 -0.8 -1.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3860 -0.8 -1.4 Predicted permeases compare
Psest_4256 -0.8 -1.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3186 -0.8 -2.4 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_2066 -0.8 -1.5 ABC-type uncharacterized transport system, permease component compare
Psest_4049 -0.8 -1.0 hypothetical protein compare
Psest_0750 -0.8 -2.1 hypothetical protein compare
Psest_0837 -0.8 -1.4 Putative lipid carrier protein compare
Psest_0120 -0.8 -2.5 hypothetical protein compare
Psest_2120 -0.8 -1.3 Transcriptional regulator compare
Psest_0855 -0.8 -2.2 NAD-dependent aldehyde dehydrogenases compare
Psest_3922 -0.8 -1.9 Response regulator of citrate/malate metabolism compare
Psest_1520 -0.8 -1.5 hypothetical protein compare
Psest_0872 -0.8 -0.7 Helix-turn-helix. compare
Psest_2590 -0.8 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_4219 -0.8 -1.0 DNA polymerase I compare
Psest_0951 -0.8 -3.2 FAD/FMN-containing dehydrogenases compare
Psest_3487 -0.8 -3.6 Nitrate/nitrite transporter compare
Psest_3908 -0.8 -1.0 Cytochrome c553 compare
Psest_1709 -0.8 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3001 -0.8 -2.2 molybdenum ABC transporter, ATP-binding protein compare
Psest_1860 -0.8 -1.2 Uncharacterized conserved protein compare
Psest_0193 -0.8 -0.7 conserved hypothetical protein compare
Psest_3084 -0.8 -1.1 methyltransferase, putative compare
Psest_1185 -0.8 -1.2 heavy metal response regulator compare
Psest_0265 -0.8 -2.2 Uncharacterized small membrane protein compare
Psest_2513 -0.8 -1.3 Predicted membrane protein compare
Psest_2104 -0.7 -0.8 IscR-regulated protein YhgI compare
Psest_2942 -0.7 -2.8 Surface lipoprotein compare
Psest_2945 -0.7 -0.7 septum site-determining protein MinC compare
Psest_3115 -0.7 -2.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_2523 -0.7 -1.6 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_1013 -0.7 -1.0 phosphoribosylamine--glycine ligase compare
Psest_0313 -0.7 -1.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3419 -0.7 -2.6 Predicted transcriptional regulators compare
Psest_3712 -0.7 -3.1 Type II secretory pathway, component ExeA (predicted ATPase) compare
Psest_1292 -0.7 -2.6 monothiol glutaredoxin, Grx4 family compare
Psest_0953 -0.7 -3.2 iron-sulfur cluster-binding protein compare
Psest_2762 -0.7 -1.6 hypothetical protein compare
Psest_1242 -0.7 -1.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0401 -0.7 -1.1 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0400 -0.7 -2.2 Geranylgeranyl pyrophosphate synthase compare
Psest_0294 -0.7 -1.7 Putative transcriptional regulator compare
Psest_0836 -0.7 -2.4 Collagenase and related proteases compare
Psest_1994 -0.7 -1.7 Amidases related to nicotinamidase compare
Psest_2239 -0.7 -1.3 RES domain. compare
Psest_3962 -0.7 -0.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0993 -0.7 -3.1 Glucose-6-phosphate isomerase compare
Psest_2136 -0.7 -3.8 Predicted homoserine dehydrogenase compare
Psest_3323 -0.7 -1.8 ribonuclease, Rne/Rng family compare
Psest_2243 -0.7 -0.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1840 -0.7 -6.1 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4178 -0.7 -1.0 hypothetical protein compare
Psest_4315 -0.7 -1.2 ABC-type metal ion transport system, permease component compare
Psest_1913 -0.7 -1.6 Transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms