Experiment set9H14 for Pseudomonas stutzeri RCH2

Compare to:

Nitrate/ lactate media with Nitrate 50mM

200 most important genes:

  gene name fitness t score description  
Psest_3480 -3.6 -2.5 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0164 -3.4 -1.9 Glutaredoxin, GrxC family compare
Psest_1473 -3.4 -4.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0799 -2.9 -2.9 Uncharacterized protein involved in response to NO compare
Psest_2234 -2.8 -6.5 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3484 -2.7 -4.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_0508 -2.5 -6.7 gamma-glutamyl phosphate reductase compare
Psest_3479 -2.4 -4.2 molybdenum cofactor synthesis domain compare
Psest_0828 -2.3 -4.1 Nitric oxide reductase activation protein compare
Psest_2850 -2.3 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3384 -2.3 -5.7 glutamate 5-kinase compare
Psest_2243 -2.2 -1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1115 -2.2 -2.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1679 -2.1 -1.4 ribonuclease, Rne/Rng family compare
Psest_2988 -2.1 -5.9 aspartate kinase, monofunctional class compare
Psest_4315 -2.1 -2.4 ABC-type metal ion transport system, permease component compare
Psest_2491 -2.1 -4.5 succinyl-CoA synthetase, beta subunit compare
Psest_0212 -2.0 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_2591 -2.0 -2.3 3-isopropylmalate dehydratase, large subunit compare
Psest_3170 -2.0 -4.4 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3113 -2.0 -1.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0716 -2.0 -2.3 Protein of unknown function (DUF3094). compare
Psest_1295 -1.9 -1.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0814 -1.9 -1.8 MoxR-like ATPases compare
Psest_0958 -1.8 -3.0 Oligoketide cyclase/lipid transport protein compare
Psest_3483 -1.8 -4.4 respiratory nitrate reductase, gamma subunit compare
Psest_1961 -1.8 -7.1 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0097 -1.8 -2.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3168 -1.8 -1.7 Molybdopterin converting factor, large subunit compare
Psest_3884 -1.8 -1.3 Signal transduction histidine kinase compare
Psest_0191 -1.7 -1.1 PAS domain S-box compare
Psest_1656 -1.7 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3937 -1.7 -2.2 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0826 -1.6 -5.0 Cytochrome c compare
Psest_3490 -1.6 -3.0 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0501 -1.6 -2.9 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_4010 -1.6 -1.5 peroxiredoxin, OsmC subfamily compare
Psest_3486 -1.6 -9.3 respiratory nitrate reductase, alpha subunit compare
Psest_2579 -1.6 -2.3 amidophosphoribosyltransferase compare
Psest_2490 -1.5 -6.2 succinyl-CoA synthetase, alpha subunit compare
Psest_4043 -1.5 -1.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_2671 -1.5 -2.2 Transcriptional regulator compare
Psest_4191 -1.5 -1.8 Transcriptional regulator compare
Psest_0827 -1.5 -7.9 Nitric oxide reductase large subunit compare
Psest_1505 -1.5 -1.7 Organic radical activating enzymes compare
Psest_3092 -1.5 -1.6 ribonuclease III, bacterial compare
Psest_4370 -1.4 -2.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2104 -1.4 -1.0 IscR-regulated protein YhgI compare
Psest_1660 -1.4 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1103 -1.4 -2.1 GTP-binding protein YchF compare
Psest_0243 -1.4 -1.0 hypothetical protein compare
Psest_2872 -1.4 -0.9 protein RecA compare
Psest_0083 -1.4 -1.8 Uncharacterized conserved protein compare
Psest_0952 -1.4 -1.5 Uncharacterized conserved protein compare
Psest_1772 -1.3 -2.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2712 -1.3 -2.7 Surface lipoprotein compare
Psest_0144 -1.3 -4.7 Fe-S cluster protector protein compare
Psest_0511 -1.3 -1.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3485 -1.3 -6.2 nitrate reductase, beta subunit compare
Psest_0601 -1.3 -1.7 hypothetical protein compare
Psest_1804 -1.3 -1.2 Superfamily II DNA and RNA helicases compare
Psest_3979 -1.3 -1.7 Fructose-2,6-bisphosphatase compare
Psest_2088 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0835 -1.2 -7.2 Collagenase and related proteases compare
Psest_2538 -1.2 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0988 -1.2 -1.5 Protein of unknown function (DUF2845). compare
Psest_0954 -1.2 -3.7 Fe-S oxidoreductase compare
Psest_4219 -1.2 -1.3 DNA polymerase I compare
Psest_0692 -1.2 -1.7 rRNA methylase, putative, group 3 compare
Psest_0401 -1.2 -1.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_3231 -1.2 -1.3 hypothetical protein compare
Psest_3998 -1.2 -2.8 glutamate--cysteine ligase compare
Psest_3850 -1.1 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2667 -1.1 -2.3 Uncharacterized protein involved in propionate catabolism compare
Psest_4183 -1.1 -1.4 PilZ domain. compare
Psest_3762 -1.1 -2.3 iron donor protein CyaY compare
Psest_1777 -1.1 -2.8 hypothetical protein compare
Psest_2253 -1.1 -1.7 small redox-active disulfide protein 2 compare
Psest_3301 -1.1 -2.2 Predicted transcriptional regulator, BolA superfamily compare
Psest_0662 -1.1 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3307 -1.1 -3.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1474 -1.1 -0.7 phosphoribosylaminoimidazole synthetase compare
Psest_3899 -1.1 -2.1 Predicted phosphoribosyltransferases compare
Psest_2123 -1.1 -1.2 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2864 -1.1 -2.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0853 -1.1 -2.0 6-phosphogluconolactonase compare
Psest_1139 -1.1 -2.7 PAS domain S-box compare
Psest_0697 -1.0 -1.5 ribosomal protein L9 compare
Psest_2442 -1.0 -1.2 hypothetical protein compare
Psest_1655 -1.0 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2329 -1.0 -5.7 Transcriptional regulator compare
Psest_1013 -1.0 -0.7 phosphoribosylamine--glycine ligase compare
Psest_1466 -1.0 -1.9 transcriptional regulator, Spx/MgsR family compare
Psest_1480 -1.0 -1.6 arsenate reductase (glutaredoxin) compare
Psest_1661 -1.0 -0.7 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2153 -1.0 -1.8 formate dehydrogenase, gamma subunit compare
Psest_3117 -1.0 -1.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_2066 -1.0 -1.8 ABC-type uncharacterized transport system, permease component compare
Psest_1012 -1.0 -1.0 Signal transduction histidine kinase compare
Psest_1999 -1.0 -0.9 pseudouridine synthase compare
Psest_3084 -1.0 -1.5 methyltransferase, putative compare
Psest_0770 -1.0 -2.2 alkylphosphonate utilization operon protein PhnA compare
Psest_0376 -1.0 -2.3 glucarate dehydratase compare
Psest_1372 -1.0 -2.1 Methyl-accepting chemotaxis protein compare
Psest_0622 -0.9 -2.7 Disulfide bond formation protein DsbB compare
Psest_3304 -0.9 -2.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3000 -0.9 -3.2 molybdate ABC transporter, permease protein compare
Psest_0867 -0.9 -0.9 hypothetical protein compare
Psest_1354 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_2001 -0.9 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2288 -0.9 -1.8 trigger factor compare
Psest_1516 -0.9 -1.2 Uncharacterized lipoprotein compare
Psest_3001 -0.9 -2.1 molybdenum ABC transporter, ATP-binding protein compare
Psest_2304 -0.9 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2317 -0.9 -3.6 Uncharacterized protein conserved in bacteria compare
Psest_2504 -0.9 -2.2 flagellar biosynthetic protein FliS compare
Psest_1870 -0.9 -0.9 Transcriptional regulators compare
Psest_1876 -0.9 -1.7 Predicted membrane protein compare
Psest_2096 -0.9 -1.9 Domain of unknown function (DUF1883). compare
Psest_1390 -0.9 -2.2 Uncharacterized ABC-type transport system, permease component compare
Psest_1532 -0.9 -1.6 DNA recombination-dependent growth factor C compare
Psest_0313 -0.9 -2.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1872 -0.9 -1.4 selT/selW/selH selenoprotein domain compare
Psest_1611 -0.9 -2.2 Beta-lactamase class D compare
Psest_1313 -0.9 -1.1 Uncharacterized conserved small protein compare
Psest_3100 -0.9 -3.4 RNA polymerase sigma factor RpoE compare
Psest_0086 -0.9 -1.8 hypothetical protein compare
Psest_3482 -0.9 -2.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_4054 -0.9 -1.8 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_1625 -0.9 -2.1 hypothetical protein compare
Psest_0953 -0.9 -3.6 iron-sulfur cluster-binding protein compare
Psest_0325 -0.9 -5.5 Putative threonine efflux protein compare
Psest_4201 -0.9 -1.2 general secretion pathway protein F compare
Psest_3064 -0.9 -1.5 hypothetical protein compare
Psest_2637 -0.8 -1.1 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2899 -0.8 -0.9 hypothetical protein compare
Psest_3197 -0.8 -2.1 hypothetical protein compare
Psest_1997 -0.8 -1.2 6-phosphogluconolactonase compare
Psest_1622 -0.8 -1.5 hypothetical protein compare
Psest_3489 -0.8 -4.0 hypothetical protein compare
Psest_3810 -0.8 -0.5 orotate phosphoribosyltransferase compare
Psest_0862 -0.8 -2.2 Glycosidases compare
Psest_0466 -0.8 -1.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1840 -0.8 -6.5 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2651 -0.8 -1.4 DNA topoisomerase I, bacterial compare
Psest_2146 -0.8 -2.4 Transcriptional regulator compare
Psest_3853 -0.8 -1.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_3458 -0.8 -1.5 hypothetical protein compare
Psest_3159 -0.8 -1.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2813 -0.8 -2.9 Predicted transcriptional regulators compare
Psest_1659 -0.8 -0.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3112 -0.8 -1.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1650 -0.8 -2.6 hypothetical protein compare
Psest_4363 -0.8 -2.7 ATPases involved in chromosome partitioning compare
Psest_3481 -0.8 -2.8 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3114 -0.8 -2.7 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2894 -0.8 -1.3 addiction module antidote protein, HigA family compare
Psest_4266 -0.8 -3.2 Signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
Psest_0587 -0.8 -1.4 Domain of Unknown Function (DUF326). compare
Psest_4203 -0.8 -2.2 NAD/NADP transhydrogenase alpha subunit compare
Psest_1643 -0.8 -0.5 hypothetical protein compare
Psest_2999 -0.8 -2.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3543 -0.8 -1.3 hypothetical protein compare
Psest_1127 -0.8 -2.8 hypothetical protein compare
Psest_0823 -0.8 -1.6 Transcriptional regulators compare
Psest_3902 -0.8 -1.4 hypothetical protein compare
Psest_0296 -0.7 -3.1 glutathione synthetase, prokaryotic compare
Psest_3296 -0.7 -1.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_4003 -0.7 -1.9 TIGR00153 family protein compare
Psest_0064 -0.7 -1.6 Transcriptional regulator compare
Psest_1582 -0.7 -1.4 Protein of unknown function (DUF3087). compare
Psest_3492 -0.7 -1.5 hypothetical protein compare
Psest_4149 -0.7 -1.4 fagellar hook-basal body proteins compare
Psest_2945 -0.7 -0.6 septum site-determining protein MinC compare
Psest_0062 -0.7 -3.6 tryptophan synthase, alpha subunit compare
Psest_0292 -0.7 -1.5 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1511 -0.7 -2.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2429 -0.7 -1.4 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_2613 -0.7 -0.9 hypothetical protein compare
Psest_0165 -0.7 -1.3 protein-export chaperone SecB compare
Psest_1292 -0.7 -2.4 monothiol glutaredoxin, Grx4 family compare
Psest_0891 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0193 -0.7 -0.7 conserved hypothetical protein compare
Psest_3303 -0.7 -1.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3129 -0.7 -0.8 tyrosine recombinase XerD compare
Psest_2983 -0.7 -1.4 hypothetical protein compare
Psest_2091 -0.7 -1.6 Molecular chaperone (small heat shock protein) compare
Psest_3496 -0.7 -0.7 Predicted metal-binding protein compare
Psest_3647 -0.7 -2.1 Indole-3-glycerol phosphate synthase compare
Psest_1752 -0.7 -0.8 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2581 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2557 -0.7 -0.7 Protein of unknown function (DUF2474). compare
Psest_1592 -0.7 -1.9 hypothetical protein compare
Psest_0507 -0.7 -2.3 Uncharacterized membrane-associated protein compare
Psest_0785 -0.7 -1.5 Thioredoxin reductase compare
Psest_4146 -0.7 -1.8 Flagellar basal-body P-ring protein compare
Psest_1271 -0.7 -1.3 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_0998 -0.7 -1.0 poly(A) polymerase compare
Psest_2762 -0.7 -1.5 hypothetical protein compare
Psest_4154 -0.7 -1.9 flagella basal body P-ring formation protein FlgA compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in anaerobic experiments

For anaerobic Sodium nitrate across organisms