Experiment set8S8 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_08705 -5.7 -10.3 carboxy terminal-processing peptidase compare
IAI47_09580 -5.3 -3.7 FNR family transcription factor compare
IAI47_13700 -5.2 -3.6 Tol-Pal system protein TolQ compare
IAI47_15635 -5.2 -4.3 RNA polymerase-binding protein DksA compare
IAI47_09040 -5.1 -2.6 NAD-dependent epimerase compare
IAI47_00655 -5.0 -6.5 glycosyltransferase family 4 protein compare
IAI47_13720 -4.8 -4.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_08700 -4.4 -9.9 RNA chaperone ProQ compare
IAI47_12645 -4.4 -6.0 porin OmpA compare
IAI47_18480 -4.3 -12.0 lipid III flippase WzxE compare
IAI47_17580 -4.1 -14.9 hypothetical protein compare
IAI47_08440 -4.1 -2.6 crossover junction endodeoxyribonuclease RuvC compare
IAI47_12930 -4.0 -3.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_08085 -4.0 -6.7 helix-turn-helix domain-containing protein compare
IAI47_13695 -4.0 -1.2 colicin uptake protein TolR compare
IAI47_18470 -3.9 -17.1 ECA oligosaccharide polymerase compare
IAI47_10845 -3.9 -4.7 major outer membrane lipoprotein compare
IAI47_13685 -3.9 -3.1 Tol-Pal system protein TolB compare
IAI47_05090 -3.8 -5.8 hypothetical protein compare
IAI47_05070 -3.8 -1.1 outer membrane protein assembly factor BamB compare
IAI47_07015 -3.8 -8.5 ABC transporter ATP-binding protein compare
IAI47_18520 -3.8 -19.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12275 -3.8 -23.3 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_12925 -3.8 -4.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09245 -3.8 -6.5 YmiA family putative membrane protein compare
IAI47_00930 -3.7 -12.4 DNA-binding transcriptional regulator OxyR compare
IAI47_05520 -3.6 -1.5 tRNA-Ala compare
IAI47_13690 -3.6 -1.0 cell envelope integrity protein TolA compare
IAI47_05195 -3.6 -3.4 DnaA inactivator Hda compare
IAI47_13725 -3.5 -8.2 cytochrome ubiquinol oxidase subunit I compare
IAI47_12280 -3.4 -15.5 glucan biosynthesis protein G compare
IAI47_11375 -3.4 -2.0 hypothetical protein compare
IAI47_15605 -3.4 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_07550 -3.4 -1.4 tRNA-Asn compare
IAI47_17000 -3.4 -11.6 lipoprotein NlpI compare
IAI47_04505 -3.4 -10.8 transcriptional repressor MprA compare
IAI47_18055 -3.3 -7.4 DNA-binding protein HU-alpha compare
IAI47_12885 -3.3 -11.8 pyruvate formate lyase 1-activating protein compare
IAI47_07010 -3.3 -4.0 ABC transporter permease compare
IAI47_07020 -3.3 -1.9 hypothetical protein compare
IAI47_05155 -3.2 -18.2 polyphosphate kinase 1 compare
IAI47_10470 -3.2 -3.1 electron transport complex subunit E compare
IAI47_01750 -3.1 -8.2 glycerol-3-phosphate dehydrogenase compare
IAI47_07025 -3.1 -7.7 glycosyltransferase family 4 protein compare
IAI47_05425 -3.0 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_11415 -3.0 -1.7 hypothetical protein compare
IAI47_21595 -3.0 -9.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_04300 -2.9 -6.6 recombinase RecA compare
IAI47_08450 -2.9 -4.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_12570 -2.9 -1.2 tRNA-Ser compare
IAI47_00445 -2.9 -12.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_06320 -2.8 -9.0 phosphate acetyltransferase compare
IAI47_14075 -2.8 -3.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_13065 -2.8 -2.4 DUF1418 family protein compare
IAI47_07005 -2.8 -6.0 glycosyltransferase family 4 protein compare
IAI47_15600 -2.8 -3.2 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_08445 -2.8 -1.4 Holliday junction branch migration protein RuvA compare
IAI47_04865 -2.8 -2.3 SoxR-reducing system protein RseC compare
IAI47_07030 -2.7 -9.7 HAD family hydrolase compare
IAI47_17235 -2.7 -10.3 stringent starvation protein A compare
IAI47_13745 -2.6 -4.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_17965 -2.6 -11.9 glucose-6-phosphate isomerase compare
IAI47_09305 -2.6 -3.0 cyclic di-GMP phosphodiesterase compare
IAI47_12880 -2.6 -16.2 formate C-acetyltransferase compare
IAI47_14470 -2.5 -3.5 YbaB/EbfC family nucleoid-associated protein compare
IAI47_12375 -2.5 -2.1 acyl carrier protein compare
IAI47_13925 -2.5 -1.7 tRNA-Met compare
IAI47_05050 -2.5 -7.6 cytoskeleton protein RodZ compare
IAI47_06325 -2.4 -7.4 acetate kinase compare
IAI47_21600 -2.4 -3.2 EamA family transporter compare
IAI47_00940 -2.4 -9.3 HTH-type transcriptional repressor FabR compare
IAI47_15725 -2.4 -5.2 DeoR/GlpR transcriptional regulator compare
IAI47_06450 -2.3 -5.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_06245 -2.3 -4.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_10320 -2.3 -1.2 Rrf2 family transcriptional regulator compare
IAI47_05420 -2.3 -1.4 PTS glucose transporter subunit IIA compare
IAI47_00780 -2.3 -3.7 6-phosphofructokinase compare
IAI47_11515 -2.2 -2.3 hypothetical protein compare
IAI47_13890 -2.2 -7.9 ROK family transcriptional regulator compare
IAI47_07000 -2.2 -7.7 UDP-glucose 4-epimerase GalE compare
IAI47_06455 -2.2 -6.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_11930 -2.2 -4.1 two-component system response regulator PhoP compare
IAI47_07790 -2.2 -2.2 ribose 1,5-bisphosphokinase compare
IAI47_03640 -2.1 -11.4 glycosyltransferase compare
IAI47_09750 -2.1 -7.4 ROK family transcriptional regulator compare
IAI47_03375 -2.1 -9.5 peptide chain release factor 3 compare
IAI47_00670 -2.1 -13.3 sugar glycosyltransferase compare
IAI47_01355 -2.1 -5.1 universal stress protein UspA compare
IAI47_07165 -2.1 -2.8 exodeoxyribonuclease I compare
IAI47_04105 -2.1 -7.3 glycerate kinase compare
IAI47_03645 -2.1 -12.0 O-antigen ligase family protein compare
IAI47_13740 -2.1 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_09055 -2.1 -9.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_19780 -2.0 -5.2 TetR/AcrR family transcriptional regulator compare
IAI47_00675 -2.0 -12.1 glycosyltransferase family 9 protein compare
IAI47_11610 -2.0 -6.8 serine/threonine-protein phosphatase compare
IAI47_00430 -2.0 -11.4 DNA polymerase I compare
IAI47_13050 -1.9 -3.4 YbjN domain-containing protein compare
IAI47_00755 -1.9 -7.6 envelope stress sensor histidine kinase CpxA compare
IAI47_03135 -1.9 -6.3 outer membrane channel protein TolC compare
IAI47_09100 -1.9 -8.9 cardiolipin synthase compare
IAI47_09235 -1.9 -1.8 type I DNA topoisomerase compare
IAI47_08850 -1.9 -6.1 septum site-determining protein MinD compare
IAI47_06235 -1.9 -6.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_02380 -1.9 -2.4 DNA-binding transcriptional regulator Fis compare
IAI47_07180 -1.9 -7.5 DUF496 family protein compare
IAI47_15155 -1.8 -2.8 DUF943 family protein compare
IAI47_13415 -1.8 -8.7 L,D-transpeptidase family protein compare
IAI47_14695 -1.8 -4.9 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_07970 -1.8 -6.7 flagellar type III secretion system protein FliR compare
IAI47_00870 -1.8 -1.0 50S ribosomal protein L31 compare
IAI47_03765 -1.8 -5.0 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_06135 -1.8 -2.5 phosphohistidine phosphatase SixA compare
IAI47_21880 -1.8 -0.7 ParA family protein compare
IAI47_11830 -1.7 -5.3 muramoyltetrapeptide carboxypeptidase compare
IAI47_16085 -1.7 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18400 -1.7 -2.5 tyrosine recombinase XerC compare
IAI47_15485 -1.7 -1.2 molecular chaperone Skp compare
IAI47_17155 -1.7 -7.9 calcium/sodium antiporter compare
IAI47_08280 -1.6 -5.7 flagellar transcriptional regulator FlhD compare
IAI47_03820 -1.6 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_04335 -1.6 -2.8 tRNA-Arg compare
IAI47_10840 -1.6 -4.2 pyruvate kinase PykF compare
IAI47_18710 -1.6 -7.1 MltR family transcriptional regulator compare
IAI47_17005 -1.6 -6.4 polyribonucleotide nucleotidyltransferase compare
IAI47_08430 -1.6 -3.6 dihydroneopterin triphosphate diphosphatase compare
IAI47_09495 -1.6 -7.7 2-hydroxyacid dehydrogenase compare
IAI47_13950 -1.5 -1.5 PhoH family protein compare
IAI47_11760 -1.5 -1.5 TonB-dependent siderophore receptor compare
IAI47_02040 -1.5 -5.6 peptidylprolyl isomerase compare
IAI47_13885 -1.5 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_18490 -1.5 -3.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_10565 -1.5 -1.9 DUF4113 domain-containing protein compare
IAI47_05535 -1.5 -7.1 Nramp family divalent metal transporter compare
IAI47_02345 -1.5 -1.1 5S ribosomal RNA compare
IAI47_02900 -1.5 -4.3 transcriptional regulator ExuR compare
IAI47_08045 -1.5 -2.3 NUDIX domain-containing protein compare
IAI47_07885 -1.4 -1.0 tRNA-Asn compare
IAI47_03550 -1.4 -7.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_15110 -1.4 -2.9 chromophore lyase compare
IAI47_18550 -1.4 -3.6 peptidylprolyl isomerase compare
IAI47_01135 -1.4 -0.7 hypothetical protein compare
IAI47_14730 -1.3 -0.9 exodeoxyribonuclease VII small subunit compare
IAI47_09345 -1.3 -4.5 LysR family transcriptional regulator compare
IAI47_10790 -1.3 -2.8 YnhF family membrane protein compare
IAI47_14660 -1.3 -5.9 trigger factor compare
IAI47_04895 -1.3 -2.0 pyridoxine 5'-phosphate synthase compare
IAI47_00730 -1.3 -2.1 glutaredoxin 3 compare
IAI47_00110 -1.3 -4.1 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_00500 -1.3 -7.3 ATP-dependent DNA helicase RecG compare
IAI47_00835 -1.3 -2.2 cell division protein ZapB compare
IAI47_03400 -1.3 -4.7 deoxyribose-phosphate aldolase compare
IAI47_00505 -1.3 -4.0 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_02750 -1.3 -8.3 class 1 fructose-bisphosphatase compare
IAI47_11220 -1.3 -4.6 serine/threonine-protein phosphatase compare
IAI47_00300 -1.3 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07980 -1.3 -4.8 flagellar type III secretion system pore protein FliP compare
IAI47_01825 -1.2 -5.8 two-component system sensor histidine kinase EnvZ compare
IAI47_03680 -1.2 -7.5 transketolase compare
IAI47_14700 -1.2 -4.9 protoheme IX farnesyltransferase compare
IAI47_00885 -1.2 -7.4 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_11845 -1.2 -3.1 hypothetical protein compare
IAI47_10435 -1.2 -4.4 transcription modulator YdgT compare
IAI47_10345 -1.2 -5.8 YdgA family protein compare
IAI47_14680 -1.2 -4.3 cytochrome o ubiquinol oxidase subunit II compare
IAI47_00465 -1.2 -0.8 ribosome-dependent GTPase TypA compare
IAI47_17255 -1.2 -1.3 DUF1043 family protein compare
IAI47_17215 -1.2 -0.7 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_11935 -1.2 -7.7 two-component system sensor histidine kinase PhoQ compare
IAI47_08855 -1.2 -3.0 septum site-determining protein MinC compare
IAI47_08285 -1.2 -5.1 flagellar transcriptional regulator FlhC compare
IAI47_13405 -1.2 -3.6 DedA family protein compare
IAI47_04450 -1.2 -1.6 tRNA-Ala compare
IAI47_08035 -1.2 -1.6 flagellar hook-basal body complex protein FliE compare
IAI47_01650 -1.2 -6.5 gluconate operon transcriptional repressor GntR compare
IAI47_03240 -1.2 -2.6 TonB system transport protein ExbD compare
IAI47_14690 -1.2 -3.9 cytochrome o ubiquinol oxidase subunit III compare
IAI47_01325 -1.2 -7.2 glutathione-disulfide reductase compare
IAI47_20895 -1.2 -6.1 LacI family DNA-binding transcriptional regulator compare
IAI47_12155 -1.1 -4.6 flagellar hook assembly protein FlgD compare
IAI47_12140 -1.1 -3.7 flagellar basal-body rod protein FlgG compare
IAI47_11475 -1.1 -1.0 hypothetical protein compare
IAI47_04705 -1.1 -0.6 hypothetical protein compare
IAI47_21675 -1.1 -3.0 helix-turn-helix domain-containing protein compare
IAI47_14200 -1.1 -2.9 hypothetical protein compare
IAI47_17120 -1.1 -1.6 BolA family iron metabolism protein IbaG compare
IAI47_13710 -1.1 -2.5 cyd operon protein YbgE compare
IAI47_15645 -1.1 -4.6 polynucleotide adenylyltransferase PcnB compare
IAI47_03235 -1.1 -3.5 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_09360 -1.1 -0.8 peptide ABC transporter ATP-binding protein SapF compare
IAI47_14590 -1.1 -6.6 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_01545 -1.1 -2.1 cell division ATP-binding protein FtsE compare
IAI47_15345 -1.1 -7.8 murein transglycosylase D compare
IAI47_06595 -1.1 -2.3 hypothetical protein compare
IAI47_18145 -1.1 -1.4 elongation factor Tu compare
IAI47_15305 -1.1 -1.9 allantoin racemase compare
IAI47_04025 -1.1 -6.7 transcriptional regulator GcvA compare
IAI47_12565 -1.1 -6.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_12135 -1.1 -6.6 flagellar basal body L-ring protein FlgH compare
IAI47_00515 -1.1 -1.0 DNA-directed RNA polymerase subunit omega compare


Specific Phenotypes

For 11 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms