Experiment set8S7 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09580 -5.2 -3.6 FNR family transcription factor compare
IAI47_08705 -5.1 -15.2 carboxy terminal-processing peptidase compare
IAI47_12645 -5.0 -3.5 porin OmpA compare
IAI47_10845 -5.0 -3.4 major outer membrane lipoprotein compare
IAI47_09040 -4.9 -2.1 NAD-dependent epimerase compare
IAI47_13720 -4.9 -3.4 cytochrome d ubiquinol oxidase subunit II compare
IAI47_07010 -4.9 -2.6 ABC transporter permease compare
IAI47_05090 -4.6 -4.5 hypothetical protein compare
IAI47_17255 -4.5 -2.5 DUF1043 family protein compare
IAI47_04865 -4.5 -2.5 SoxR-reducing system protein RseC compare
IAI47_18055 -4.5 -9.1 DNA-binding protein HU-alpha compare
IAI47_08085 -4.3 -5.1 helix-turn-helix domain-containing protein compare
IAI47_17000 -4.3 -15.6 lipoprotein NlpI compare
IAI47_07015 -4.3 -8.2 ABC transporter ATP-binding protein compare
IAI47_08700 -4.2 -9.8 RNA chaperone ProQ compare
IAI47_13700 -4.2 -5.0 Tol-Pal system protein TolQ compare
IAI47_00655 -4.2 -6.0 glycosyltransferase family 4 protein compare
IAI47_18480 -4.2 -13.2 lipid III flippase WzxE compare
IAI47_09235 -4.2 -2.1 type I DNA topoisomerase compare
IAI47_13695 -4.0 -1.0 colicin uptake protein TolR compare
IAI47_00770 -3.9 -1.0 general stress protein compare
IAI47_01750 -3.9 -7.0 glycerol-3-phosphate dehydrogenase compare
IAI47_13725 -3.9 -7.0 cytochrome ubiquinol oxidase subunit I compare
IAI47_05070 -3.8 -0.9 outer membrane protein assembly factor BamB compare
IAI47_12925 -3.7 -4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13950 -3.7 -1.8 PhoH family protein compare
IAI47_18520 -3.6 -16.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_15635 -3.6 -3.1 RNA polymerase-binding protein DksA compare
IAI47_13690 -3.5 -0.9 cell envelope integrity protein TolA compare
IAI47_12275 -3.5 -20.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_12280 -3.5 -16.3 glucan biosynthesis protein G compare
IAI47_14730 -3.5 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_14075 -3.3 -3.1 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00930 -3.3 -13.0 DNA-binding transcriptional regulator OxyR compare
IAI47_15605 -3.2 -1.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_11475 -3.2 -1.1 hypothetical protein compare
IAI47_18400 -3.2 -3.1 tyrosine recombinase XerC compare
IAI47_04505 -3.2 -10.5 transcriptional repressor MprA compare
IAI47_01355 -3.1 -7.3 universal stress protein UspA compare
IAI47_07020 -3.1 -1.5 hypothetical protein compare
IAI47_18470 -3.0 -12.6 ECA oligosaccharide polymerase compare
IAI47_03820 -3.0 -4.1 site-specific tyrosine recombinase XerD compare
IAI47_04800 -3.0 -1.0 RnfH family protein compare
IAI47_11760 -2.9 -1.6 TonB-dependent siderophore receptor compare
IAI47_17235 -2.9 -11.2 stringent starvation protein A compare
IAI47_00870 -2.9 -1.0 50S ribosomal protein L31 compare
IAI47_03440 -2.9 -3.7 general stress protein compare
IAI47_09305 -2.9 -2.0 cyclic di-GMP phosphodiesterase compare
IAI47_06325 -2.8 -7.9 acetate kinase compare
IAI47_04300 -2.8 -6.0 recombinase RecA compare
IAI47_11415 -2.8 -1.4 hypothetical protein compare
IAI47_05580 -2.7 -1.5 membrane protein YpdK compare
IAI47_15110 -2.7 -6.5 chromophore lyase compare
IAI47_00780 -2.7 -2.6 6-phosphofructokinase compare
IAI47_15485 -2.6 -1.1 molecular chaperone Skp compare
IAI47_13885 -2.6 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08445 -2.6 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_05425 -2.6 -5.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06455 -2.5 -6.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_13050 -2.5 -3.3 YbjN domain-containing protein compare
IAI47_17965 -2.5 -11.6 glucose-6-phosphate isomerase compare
IAI47_16190 -2.4 -5.0 molybdopterin adenylyltransferase compare
IAI47_13740 -2.4 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_12375 -2.4 -1.7 acyl carrier protein compare
IAI47_00675 -2.4 -12.3 glycosyltransferase family 9 protein compare
IAI47_05155 -2.4 -12.8 polyphosphate kinase 1 compare
IAI47_17580 -2.4 -8.5 hypothetical protein compare
IAI47_13570 -2.4 -2.6 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_06245 -2.4 -4.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05195 -2.3 -2.1 DnaA inactivator Hda compare
IAI47_15595 -2.3 -1.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_15090 -2.3 -5.0 hypothetical protein compare
IAI47_10320 -2.3 -1.0 Rrf2 family transcriptional regulator compare
IAI47_00940 -2.2 -7.6 HTH-type transcriptional repressor FabR compare
IAI47_09055 -2.2 -11.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06320 -2.2 -7.9 phosphate acetyltransferase compare
IAI47_12885 -2.2 -9.6 pyruvate formate lyase 1-activating protein compare
IAI47_11535 -2.2 -2.6 DcrB-related protein compare
IAI47_00445 -2.2 -9.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_16600 -2.2 -1.3 tRNA-OTHER compare
IAI47_06965 -2.2 -1.6 glycosyltransferase family 2 protein compare
IAI47_05420 -2.2 -1.2 PTS glucose transporter subunit IIA compare
IAI47_13890 -2.2 -6.6 ROK family transcriptional regulator compare
IAI47_15235 -2.1 -2.3 hydroxyisourate hydrolase compare
IAI47_12930 -2.1 -3.4 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_11515 -2.1 -1.9 hypothetical protein compare
IAI47_07180 -2.1 -6.7 DUF496 family protein compare
IAI47_12880 -2.1 -14.7 formate C-acetyltransferase compare
IAI47_00430 -2.1 -12.2 DNA polymerase I compare
IAI47_08450 -2.0 -3.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_13415 -2.0 -8.7 L,D-transpeptidase family protein compare
IAI47_03645 -2.0 -10.1 O-antigen ligase family protein compare
IAI47_02380 -2.0 -2.0 DNA-binding transcriptional regulator Fis compare
IAI47_06235 -2.0 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_09395 -2.0 -3.0 phage shock protein PspA compare
IAI47_03375 -1.9 -8.7 peptide chain release factor 3 compare
IAI47_18490 -1.9 -3.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_15725 -1.9 -4.3 DeoR/GlpR transcriptional regulator compare
IAI47_10835 -1.9 -0.8 tRNA-Val compare
IAI47_08355 -1.9 -2.5 flagellar protein FlhE compare
IAI47_02345 -1.8 -1.2 5S ribosomal RNA compare
IAI47_15600 -1.7 -1.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_00730 -1.7 -2.6 glutaredoxin 3 compare
IAI47_03240 -1.7 -3.9 TonB system transport protein ExbD compare
IAI47_01545 -1.7 -2.9 cell division ATP-binding protein FtsE compare
IAI47_03640 -1.7 -8.4 glycosyltransferase compare
IAI47_16995 -1.7 -1.7 protein YrbN compare
IAI47_03135 -1.7 -5.3 outer membrane channel protein TolC compare
IAI47_07135 -1.7 -4.9 DeoR/GlpR transcriptional regulator compare
IAI47_09750 -1.7 -5.3 ROK family transcriptional regulator compare
IAI47_07000 -1.7 -6.2 UDP-glucose 4-epimerase GalE compare
IAI47_12435 -1.7 -2.2 hypothetical protein compare
IAI47_17155 -1.7 -6.9 calcium/sodium antiporter compare
IAI47_13850 -1.6 -3.8 LexA regulated protein compare
IAI47_00670 -1.6 -9.7 sugar glycosyltransferase compare
IAI47_21595 -1.6 -5.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_09245 -1.6 -3.0 YmiA family putative membrane protein compare
IAI47_05050 -1.6 -4.2 cytoskeleton protein RodZ compare
IAI47_00500 -1.5 -8.4 ATP-dependent DNA helicase RecG compare
IAI47_00755 -1.5 -5.7 envelope stress sensor histidine kinase CpxA compare
IAI47_18215 -1.5 -1.1 Trk system potassium transporter TrkH compare
IAI47_08855 -1.5 -3.7 septum site-determining protein MinC compare
IAI47_06450 -1.5 -3.6 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07030 -1.5 -4.4 HAD family hydrolase compare
IAI47_01180 -1.5 -1.1 prolyl oligopeptidase family serine peptidase compare
IAI47_03765 -1.5 -3.9 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_01650 -1.5 -7.7 gluconate operon transcriptional repressor GntR compare
IAI47_05185 -1.5 -4.4 uracil phosphoribosyltransferase compare
IAI47_11830 -1.4 -4.2 muramoyltetrapeptide carboxypeptidase compare
IAI47_08430 -1.4 -2.1 dihydroneopterin triphosphate diphosphatase compare
IAI47_08105 -1.4 -2.1 DinI family protein compare
IAI47_07985 -1.4 -4.1 flagellar biosynthetic protein FliO compare
IAI47_08625 -1.4 -3.3 hypothetical protein compare
IAI47_18830 -1.4 -0.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13755 -1.4 -5.6 succinate dehydrogenase flavoprotein subunit compare
IAI47_20705 -1.4 -0.8 sulfur carrier protein ThiS compare
IAI47_18415 -1.4 -2.2 lipoprotein compare
IAI47_13840 -1.4 -2.8 replication initiation negative regulator SeqA compare
IAI47_16055 -1.4 -7.5 RNA polymerase-associated protein RapA compare
IAI47_08160 -1.4 -3.8 RNA polymerase sigma factor FliA compare
IAI47_11220 -1.4 -4.7 serine/threonine-protein phosphatase compare
IAI47_10520 -1.4 -2.1 pyridoxamine 5'-phosphate oxidase compare
IAI47_04105 -1.4 -4.7 glycerate kinase compare
IAI47_02350 -1.4 -0.8 tRNA-Thr compare
IAI47_06010 -1.4 -3.3 hypothetical protein compare
IAI47_07005 -1.4 -1.7 glycosyltransferase family 4 protein compare
IAI47_12565 -1.4 -7.4 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_13935 -1.3 -0.8 tRNA-Gln compare
IAI47_00330 -1.3 -8.2 low affinity potassium transporter Kup compare
IAI47_19780 -1.3 -3.3 TetR/AcrR family transcriptional regulator compare
IAI47_20905 -1.3 -2.8 PTS transporter subunit EIIB compare
IAI47_06240 -1.3 -4.1 aspartate-semialdehyde dehydrogenase compare
IAI47_21610 -1.3 -6.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_09435 -1.3 -4.7 GtrA family protein compare
IAI47_09325 -1.3 -7.6 FdhF/YdeP family oxidoreductase compare
IAI47_08285 -1.3 -4.3 flagellar transcriptional regulator FlhC compare
IAI47_18710 -1.3 -4.1 MltR family transcriptional regulator compare
IAI47_17005 -1.3 -5.3 polyribonucleotide nucleotidyltransferase compare
IAI47_06980 -1.3 -2.2 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_13685 -1.3 -0.7 Tol-Pal system protein TolB compare
IAI47_14295 -1.3 -1.8 hypothetical protein compare
IAI47_14705 -1.3 -5.5 MFS transporter compare
IAI47_11935 -1.3 -6.3 two-component system sensor histidine kinase PhoQ compare
IAI47_15005 -1.2 -1.7 hypothetical protein compare
IAI47_08030 -1.2 -5.8 flagellar M-ring protein FliF compare
IAI47_08045 -1.2 -1.3 NUDIX domain-containing protein compare
IAI47_03680 -1.2 -6.3 transketolase compare
IAI47_11610 -1.2 -5.3 serine/threonine-protein phosphatase compare
IAI47_07025 -1.2 -2.8 glycosyltransferase family 4 protein compare
IAI47_14695 -1.2 -2.8 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_18705 -1.2 -5.9 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08280 -1.2 -4.0 flagellar transcriptional regulator FlhD compare
IAI47_14470 -1.2 -1.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_04950 -1.2 -4.7 nitrogen regulatory protein P-II compare
IAI47_07980 -1.2 -3.7 flagellar type III secretion system pore protein FliP compare
IAI47_06445 -1.2 -2.3 2Fe-2S ferredoxin-like protein compare
IAI47_06755 -1.2 -6.1 NAD-dependent malic enzyme compare
IAI47_03805 -1.2 -2.9 FAD assembly factor SdhE compare
IAI47_04545 -1.2 -2.3 glutaredoxin-like protein NrdH compare
IAI47_00505 -1.2 -3.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_16320 -1.2 -4.5 DNA-binding transcriptional repressor DeoR compare
IAI47_09675 -1.2 -2.1 YoaK family small membrane protein compare
IAI47_15155 -1.2 -1.7 DUF943 family protein compare
IAI47_03550 -1.1 -5.6 membrane-bound lytic murein transglycosylase MltC compare
IAI47_10470 -1.1 -1.6 electron transport complex subunit E compare
IAI47_14330 -1.1 -2.3 AAA family ATPase compare
IAI47_11375 -1.1 -0.8 hypothetical protein compare
IAI47_04335 -1.1 -2.0 tRNA-Arg compare
IAI47_03235 -1.1 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_11215 -1.1 -4.9 type VI secretion system-associated FHA domain protein TagH compare
IAI47_07990 -1.1 -2.3 flagellar motor switch protein FliN compare
IAI47_00885 -1.1 -6.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_16405 -1.1 -2.0 siderophore-iron reductase FhuF compare
IAI47_10925 -1.1 -2.3 EAL domain-containing protein compare
IAI47_07955 -1.1 -2.6 protein DsrB compare
IAI47_07390 -1.1 -2.3 creatininase family protein compare
IAI47_06135 -1.1 -2.0 phosphohistidine phosphatase SixA compare
IAI47_05080 -1.1 -1.8 zinc ribbon domain-containing protein compare
IAI47_08420 -1.1 -3.4 DUF72 domain-containing protein compare
IAI47_02900 -1.1 -2.5 transcriptional regulator ExuR compare


Specific Phenotypes

For 10 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms