Experiment set8S7 for Pantoea sp. MT58
Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Group: survivalMedia: + Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Culturing: MT058_ML2, tube, Aerobic
By: Mike Thorgersen on 6/27/23
Specific Phenotypes
For 10 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Carbon fixation in photosynthetic organisms
- Biosynthesis of ansamycins
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pentose phosphate pathway (partial) | 3 | 3 | 2 |
| pentose phosphate pathway (non-oxidative branch) I | 5 | 5 | 2 |
| cytochrome c biogenesis (system I type) | 11 | 9 | 4 |
| pentose phosphate pathway (non-oxidative branch) II | 6 | 5 | 2 |
| D-apiose degradation I | 3 | 2 | 1 |
| pentose phosphate pathway | 8 | 8 | 2 |
| formaldehyde assimilation II (assimilatory RuMP Cycle) | 9 | 8 | 2 |
| Rubisco shunt | 10 | 9 | 2 |
| glucose degradation (oxidative) | 5 | 4 | 1 |
| formaldehyde assimilation III (dihydroxyacetone cycle) | 12 | 11 | 2 |
| Calvin-Benson-Bassham cycle | 13 | 10 | 2 |
| L-ascorbate biosynthesis VIII (engineered pathway) | 7 | 5 | 1 |
| superpathway of glucose and xylose degradation | 17 | 16 | 2 |
| oxygenic photosynthesis | 17 | 11 | 2 |
| ethene biosynthesis V (engineered) | 25 | 18 | 2 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 19 | 2 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 19 | 2 |
| Bifidobacterium shunt | 15 | 14 | 1 |