Experiment set8S531 for Methanococcus maripaludis JJ

Compare to:

McCas_formate_complete deta nonoate 0.025 mM

200 most important genes:

  gene name fitness t score description  
MMJJ_RS01270 -5.8 -10.5 4Fe-4S binding protein compare
MMJJ_RS02935 -5.5 -1.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS01275 -5.2 -6.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS01280 -4.8 -16.8 hydroxylamine reductase compare
MMJJ_RS08430 -4.6 -5.4 small nuclear ribonucleoprotein compare
MMJJ_RS02040 -4.3 -1.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03055 -4.2 -1.8 hypothetical protein compare
MMJJ_RS01810 -4.1 -1.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05770 -4.0 -1.7 flagellar protein D compare
MMJJ_RS08320 -3.9 -1.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS01880 -3.9 -2.0 RlmE family RNA methyltransferase compare
MMJJ_RS00425 -3.9 -3.4 hypothetical protein compare
MMJJ_RS04485 -3.8 -8.2 riboflavin synthase compare
MMJJ_RS00580 -3.7 -1.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08575 -3.7 -3.5 hypothetical protein compare
MMJJ_RS01820 -3.6 -4.3 MJ1244 family protein compare
MMJJ_RS05360 -3.6 -5.0 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS08230 -3.5 -1.7 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS06805 -3.5 -1.7 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS00055 -3.5 -7.4 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS05575 -3.5 -2.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS04995 -3.5 -4.5 Tfx family DNA-binding protein compare
MMJJ_RS06915 -3.5 -11.9 helix-turn-helix domain-containing protein compare
MMJJ_RS05065 -3.4 -3.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01285 -3.4 -4.4 CopG family ribbon-helix-helix protein compare
MMJJ_RS07470 -3.4 -1.3 50S ribosome-binding GTPase compare
MMJJ_RS09375 -3.4 -1.1 hypothetical protein compare
MMJJ_RS05535 -3.4 -11.5 hypothetical protein compare
MMJJ_RS02200 -3.3 -5.4 chorismate pyruvate-lyase family protein compare
MMJJ_RS04970 -3.3 -1.3 DUF655 domain-containing protein compare
MMJJ_RS09175 -3.2 -0.9 anthranilate synthase component I compare
MMJJ_RS06875 -3.2 -1.4 hypothetical protein compare
MMJJ_RS04875 -3.2 -1.1 tRNA-Lys compare
MMJJ_RS04800 -3.2 -2.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08840 -3.2 -2.2 calcium/sodium antiporter compare
MMJJ_RS04150 -3.2 -1.9 DUF5379 domain-containing protein compare
MMJJ_RS07950 -3.1 -1.6 4Fe-4S binding protein compare
MMJJ_RS00210 -3.1 -1.3 DUF530 family protein compare
MMJJ_RS06785 -3.1 -7.0 RNA ligase partner protein compare
MMJJ_RS05190 -3.1 -5.1 gamma carbonic anhydrase family protein compare
MMJJ_RS00040 -3.1 -6.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS03140 -3.1 -9.5 tRNA-dihydrouridine synthase compare
MMJJ_RS06910 -3.1 -1.4 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07410 -3.1 -1.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07415 -3.1 -1.4 polyprenyl diphosphate synthase compare
MMJJ_RS02045 -3.1 -1.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00035 -3.0 -14.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS03965 -3.0 -1.0 DNA-directed RNA polymerase subunit L compare
MMJJ_RS08010 -3.0 -6.5 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04565 -3.0 -1.5 sirohydrochlorin nickelochelatase compare
MMJJ_RS08500 -3.0 -5.7 L-sulfolactate dehydrogenase compare
MMJJ_RS06860 -3.0 -1.6 hypothetical protein compare
MMJJ_RS03785 -3.0 -1.5 hypothetical protein compare
MMJJ_RS04200 -3.0 -2.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00060 -2.9 -13.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS05280 -2.9 -0.8 hypothetical protein compare
MMJJ_RS04475 -2.9 -3.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS01690 -2.9 -2.7 methanogenesis marker 12 protein compare
MMJJ_RS08490 -2.9 -2.7 rubrerythrin family protein compare
MMJJ_RS04730 -2.9 -2.4 tyrosine decarboxylase MfnA compare
MMJJ_RS05380 -2.9 -0.8 hypothetical protein compare
MMJJ_RS05590 -2.9 -1.4 homoserine dehydrogenase compare
MMJJ_RS01960 -2.8 -5.4 glycosyltransferase family 2 protein compare
MMJJ_RS07000 -2.8 -1.1 TrkH family potassium uptake protein compare
MMJJ_RS08335 -2.8 -1.1 ABC transporter ATP-binding protein compare
MMJJ_RS08585 -2.8 -7.2 M42 family metallopeptidase compare
MMJJ_RS06930 -2.8 -1.3 type II methionyl aminopeptidase compare
MMJJ_RS06695 -2.8 -1.4 amidohydrolase compare
MMJJ_RS03225 -2.7 -1.8 4Fe-4S binding protein compare
MMJJ_RS01290 -2.7 -7.5 hypothetical protein compare
MMJJ_RS08535 -2.7 -2.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04700 -2.7 -4.8 deoxyhypusine synthase compare
MMJJ_RS07350 -2.7 -2.1 4Fe-4S binding protein compare
MMJJ_RS05995 -2.7 -1.2 ATP-binding cassette domain-containing protein compare
MMJJ_RS05610 -2.7 -2.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06270 -2.7 -6.8 dethiobiotin synthase compare
MMJJ_RS03270 -2.7 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06750 -2.7 -1.1 homoaconitase large subunit compare
MMJJ_RS06200 -2.7 -1.1 phosphoglycerate dehydrogenase compare
MMJJ_RS04685 -2.7 -5.0 carbamoyltransferase HypF compare
MMJJ_RS00560 -2.6 -1.5 homoisocitrate dehydrogenase compare
MMJJ_RS08080 -2.6 -7.8 TIGR00300 family protein compare
MMJJ_RS00065 -2.6 -7.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS08625 -2.6 -4.3 magnesium/cobalt transporter CorA compare
MMJJ_RS04655 -2.6 -5.8 FAD-dependent oxidoreductase compare
MMJJ_RS00050 -2.6 -6.9 AAA family ATPase compare
MMJJ_RS03200 -2.6 -1.1 uroporphyrinogen-III synthase compare
MMJJ_RS03895 -2.6 -1.3 hydrogenase expression/formation protein HypE compare
MMJJ_RS03110 -2.6 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00075 -2.6 -8.3 AAA family ATPase compare
MMJJ_RS05765 -2.6 -0.7 flagellar protein E compare
MMJJ_RS00045 -2.6 -11.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS01765 -2.5 -6.8 winged helix-turn-helix domain-containing protein compare
MMJJ_RS03620 -2.5 -1.7 DUF2097 domain-containing protein compare
MMJJ_RS03230 -2.5 -3.1 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05155 -2.5 -4.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS01355 -2.5 -1.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS05810 -2.5 -4.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00570 -2.5 -1.1 ribonuclease P compare
MMJJ_RS06255 -2.5 -3.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04050 -2.5 -0.8 dihydroneopterin aldolase family protein compare
MMJJ_RS06885 -2.5 -1.5 EhaF family protein compare
MMJJ_RS05560 -2.5 -3.5 30S ribosomal protein S27e compare
MMJJ_RS00125 -2.5 -1.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS06855 -2.4 -0.8 DUF2104 domain-containing protein compare
MMJJ_RS03760 -2.4 -1.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06905 -2.4 -0.9 hypothetical protein compare
MMJJ_RS07380 -2.4 -6.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08005 -2.4 -10.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS08330 -2.4 -1.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS05655 -2.4 -7.5 HisA/HisF family protein compare
MMJJ_RS08020 -2.4 -6.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06180 -2.4 -1.3 tryptophan--tRNA ligase compare
MMJJ_RS03580 -2.4 -1.3 TIGR00303 family protein compare
MMJJ_RS08850 -2.4 -1.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06240 -2.3 -1.5 dihydropteroate synthase-like protein compare
MMJJ_RS06375 -2.3 -2.9 UbiX family flavin prenyltransferase compare
MMJJ_RS03125 -2.3 -2.5 GMC oxidoreductase compare
MMJJ_RS06175 -2.3 -1.0 DUF1743 domain-containing protein compare
MMJJ_RS05780 -2.3 -2.2 flagellin compare
MMJJ_RS07655 -2.3 -9.5 hypothetical protein compare
MMJJ_RS03810 -2.3 -2.6 AIR synthase-related protein compare
MMJJ_RS06760 -2.3 -1.6 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06390 -2.3 -0.9 NADPH-dependent F420 reductase compare
MMJJ_RS00355 -2.3 -2.3 ribonuclease P protein component 4 compare
MMJJ_RS04010 -2.3 -4.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS09055 -2.2 -7.1 NFACT family protein compare
MMJJ_RS05415 -2.2 -0.9 hypothetical protein compare
MMJJ_RS03155 -2.2 -8.5 hypothetical protein compare
MMJJ_RS04505 -2.2 -5.1 CDC48 family AAA ATPase compare
MMJJ_RS05935 -2.2 -1.4 Era-like GTP-binding protein compare
MMJJ_RS03170 -2.2 -5.0 DUF5612 domain-containing protein compare
MMJJ_RS07155 -2.2 -7.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07190 -2.2 -3.0 RtcB family protein compare
MMJJ_RS08095 -2.2 -2.8 cobyric acid synthase CobQ compare
MMJJ_RS01415 -2.2 -1.0 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07360 -2.2 -1.2 TIGR00269 family protein compare
MMJJ_RS06725 -2.1 -8.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05650 -2.1 -1.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS01870 -2.1 -0.9 methanogenesis marker 15 protein compare
MMJJ_RS00265 -2.1 -5.2 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03150 -2.1 -3.2 2-phospho-L-lactate transferase compare
MMJJ_RS03135 -2.1 -4.2 CBS domain-containing protein compare
MMJJ_RS04575 -2.1 -6.7 DUF116 domain-containing protein compare
MMJJ_RS01750 -2.1 -1.0 ferrous iron transport protein A compare
MMJJ_RS06155 -2.1 -3.6 phosphatidylglycerophosphatase A compare
MMJJ_RS05070 -2.1 -0.9 DNA primase catalytic subunit PriS compare
MMJJ_RS06170 -2.1 -7.6 hypothetical protein compare
MMJJ_RS02205 -2.1 -8.1 hypothetical protein compare
MMJJ_RS03845 -2.1 -4.2 translation initiation factor IF-2 compare
MMJJ_RS01865 -2.1 -3.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS00645 -2.1 -7.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00080 -2.1 -8.7 DUF166 domain-containing protein compare
MMJJ_RS01200 -2.0 -1.2 PRC-barrel domain-containing protein compare
MMJJ_RS08035 -2.0 -4.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS08175 -2.0 -5.4 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS05490 -2.0 -1.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS04110 -2.0 -3.3 hypothetical protein compare
MMJJ_RS07370 -2.0 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS06220 -2.0 -3.5 polyamine aminopropyltransferase compare
MMJJ_RS02090 -2.0 -3.5 tyramine--L-glutamate ligase compare
MMJJ_RS01755 -2.0 -1.0 ferrous iron transport protein B compare
MMJJ_RS03660 -2.0 -1.5 DUF447 family protein compare
MMJJ_RS00195 -2.0 -2.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS07005 -1.9 -2.5 transcription factor S compare
MMJJ_RS03240 -1.9 -1.8 histone family protein compare
MMJJ_RS08340 -1.9 -4.1 archaeoflavoprotein AfpA compare
MMJJ_RS07720 -1.9 -0.7 UPF0058 family protein compare
MMJJ_RS01935 -1.9 -1.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01360 -1.9 -1.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS01350 -1.9 -4.1 sodium:proton antiporter compare
MMJJ_RS08660 -1.9 -2.3 acetylornithine transaminase compare
MMJJ_RS01815 -1.9 -1.8 DUF134 domain-containing protein compare
MMJJ_RS01475 -1.9 -0.8 signal recognition particle-docking protein FtsY compare
MMJJ_RS01405 -1.9 -0.9 proline--tRNA ligase compare
MMJJ_RS00275 -1.9 -0.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS08325 -1.9 -1.3 glycosyltransferase family 2 protein compare
MMJJ_RS03670 -1.8 -2.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05445 -1.8 -0.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07705 -1.8 -1.8 GTP-binding protein EngB compare
MMJJ_RS02275 -1.8 -2.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03765 -1.8 -3.6 hypothetical protein compare
MMJJ_RS07945 -1.8 -1.2 4Fe-4S binding protein compare
MMJJ_RS03875 -1.8 -1.9 CBS domain-containing protein compare
MMJJ_RS08470 -1.8 -2.4 ferredoxin family protein compare
MMJJ_RS00550 -1.8 -6.4 AIR synthase-related protein compare
MMJJ_RS03995 -1.8 -4.7 PHP domain-containing protein compare
MMJJ_RS09190 -1.8 -0.6 tryptophan synthase subunit beta compare
MMJJ_RS03710 -1.8 -4.1 DUF2111 domain-containing protein compare
MMJJ_RS01600 -1.8 -0.9 radical SAM protein compare
MMJJ_RS08925 -1.8 -7.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS04520 -1.7 -3.3 coenzyme F430 synthase compare
MMJJ_RS04155 -1.7 -3.2 hypothetical protein compare
MMJJ_RS00600 -1.7 -1.5 hydroxymethylbilane synthase compare
MMJJ_RS04675 -1.7 -3.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS03815 -1.7 -0.7 nascent polypeptide-associated complex protein compare
MMJJ_RS00205 -1.7 -3.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05710 -1.7 -3.3 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS07275 -1.7 -1.0 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS07590 -1.7 -7.5 flap endonuclease-1 compare


Specific Phenotypes

For 4 genes in this experiment

For stress deta nonoate in Methanococcus maripaludis JJ

For stress deta nonoate across organisms