Experiment set8S51 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00655 -5.7 -7.6 glycosyltransferase family 4 protein compare
IAI47_17235 -4.7 -18.1 stringent starvation protein A compare
IAI47_15600 -4.4 -3.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_13690 -4.3 -1.3 cell envelope integrity protein TolA compare
IAI47_05070 -4.3 -1.3 outer membrane protein assembly factor BamB compare
IAI47_07020 -4.2 -2.4 hypothetical protein compare
IAI47_08085 -4.2 -5.8 helix-turn-helix domain-containing protein compare
IAI47_09040 -4.1 -2.6 NAD-dependent epimerase compare
IAI47_13685 -4.1 -3.5 Tol-Pal system protein TolB compare
IAI47_09415 -4.1 -9.8 YcjX family protein compare
IAI47_09100 -4.0 -10.5 cardiolipin synthase compare
IAI47_15605 -4.0 -2.3 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_13695 -4.0 -1.2 colicin uptake protein TolR compare
IAI47_00735 -3.9 -2.7 protein-export chaperone SecB compare
IAI47_00430 -3.9 -14.7 DNA polymerase I compare
IAI47_09420 -3.8 -9.9 TIGR01620 family protein compare
IAI47_18415 -3.7 -3.1 lipoprotein compare
IAI47_01820 -3.7 -11.1 two-component system response regulator OmpR compare
IAI47_10520 -3.6 -3.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_01825 -3.5 -14.8 two-component system sensor histidine kinase EnvZ compare
IAI47_07015 -3.4 -8.7 ABC transporter ATP-binding protein compare
IAI47_09580 -3.3 -4.5 FNR family transcription factor compare
IAI47_18830 -3.2 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04300 -3.2 -5.7 recombinase RecA compare
IAI47_14730 -3.0 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_18240 -3.0 -2.9 NAD(P)H-flavin reductase compare
IAI47_15595 -3.0 -1.9 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_07550 -3.0 -1.2 tRNA-Asn compare
IAI47_00780 -3.0 -3.5 6-phosphofructokinase compare
IAI47_17185 -2.9 -7.5 RNA polymerase factor sigma-54 compare
IAI47_11310 -2.9 -4.4 redox-regulated ATPase YchF compare
IAI47_16995 -2.9 -2.6 protein YrbN compare
IAI47_03375 -2.9 -10.7 peptide chain release factor 3 compare
IAI47_11450 -2.8 -8.2 ankyrin repeat domain-containing protein compare
IAI47_09265 -2.7 -4.5 LapA family protein compare
IAI47_06320 -2.6 -8.2 phosphate acetyltransferase compare
IAI47_02380 -2.6 -2.4 DNA-binding transcriptional regulator Fis compare
IAI47_00300 -2.6 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_08445 -2.6 -1.5 Holliday junction branch migration protein RuvA compare
IAI47_09390 -2.6 -9.3 phage shock protein operon transcriptional activator compare
IAI47_13050 -2.5 -5.5 YbjN domain-containing protein compare
IAI47_03135 -2.5 -8.6 outer membrane channel protein TolC compare
IAI47_07010 -2.5 -2.7 ABC transporter permease compare
IAI47_01365 -2.5 -1.7 inorganic phosphate transporter PitA compare
IAI47_16520 -2.5 -11.6 hypothetical protein compare
IAI47_18480 -2.4 -12.3 lipid III flippase WzxE compare
IAI47_16085 -2.4 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18400 -2.4 -3.2 tyrosine recombinase XerC compare
IAI47_06325 -2.3 -6.5 acetate kinase compare
IAI47_17005 -2.3 -7.3 polyribonucleotide nucleotidyltransferase compare
IAI47_01120 -2.3 -10.8 manganese efflux pump MntP compare
IAI47_03820 -2.3 -4.4 site-specific tyrosine recombinase XerD compare
IAI47_13850 -2.3 -5.3 LexA regulated protein compare
IAI47_08450 -2.3 -4.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_02585 -2.3 -4.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_08745 -2.3 -2.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_09405 -2.2 -6.1 envelope stress response membrane protein PspC compare
IAI47_17965 -2.2 -13.2 glucose-6-phosphate isomerase compare
IAI47_08705 -2.2 -12.9 carboxy terminal-processing peptidase compare
IAI47_10840 -2.2 -4.6 pyruvate kinase PykF compare
IAI47_16990 -2.2 -3.6 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00870 -2.1 -0.8 50S ribosomal protein L31 compare
IAI47_04870 -2.1 -6.4 elongation factor 4 compare
IAI47_18215 -2.1 -1.6 Trk system potassium transporter TrkH compare
IAI47_08040 -2.1 -2.7 hypothetical protein compare
IAI47_07030 -2.1 -8.1 HAD family hydrolase compare
IAI47_04400 -2.0 -6.4 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_18520 -2.0 -13.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_00460 -2.0 -2.3 glutamate--ammonia ligase compare
IAI47_12885 -2.0 -6.8 pyruvate formate lyase 1-activating protein compare
IAI47_14470 -2.0 -2.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_06655 -2.0 -3.4 1-phosphofructokinase compare
IAI47_04835 -1.9 -7.8 ATP-dependent RNA helicase SrmB compare
IAI47_00675 -1.9 -14.1 glycosyltransferase family 9 protein compare
IAI47_18470 -1.9 -12.2 ECA oligosaccharide polymerase compare
IAI47_00670 -1.9 -13.9 sugar glycosyltransferase compare
IAI47_07450 -1.9 -3.0 winged helix-turn-helix domain-containing protein compare
IAI47_03240 -1.9 -4.1 TonB system transport protein ExbD compare
IAI47_04865 -1.9 -2.0 SoxR-reducing system protein RseC compare
IAI47_11760 -1.9 -1.2 TonB-dependent siderophore receptor compare
IAI47_15485 -1.9 -1.5 molecular chaperone Skp compare
IAI47_15970 -1.8 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_13885 -1.8 -2.0 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_15155 -1.8 -3.7 DUF943 family protein compare
IAI47_02090 -1.8 -3.7 elongation factor Tu compare
IAI47_17035 -1.8 -2.7 ribosome maturation factor RimP compare
IAI47_13890 -1.8 -7.6 ROK family transcriptional regulator compare
IAI47_15110 -1.8 -4.0 chromophore lyase compare
IAI47_03645 -1.8 -12.6 O-antigen ligase family protein compare
IAI47_12880 -1.7 -11.0 formate C-acetyltransferase compare
IAI47_10925 -1.7 -2.6 EAL domain-containing protein compare
IAI47_20595 -1.7 -4.1 GhoT/OrtT family toxin compare
IAI47_03640 -1.7 -11.6 glycosyltransferase compare
IAI47_13950 -1.7 -1.5 PhoH family protein compare
IAI47_20250 -1.6 -2.9 DeoR family transcriptional regulator compare
IAI47_08440 -1.6 -1.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_18055 -1.6 -4.9 DNA-binding protein HU-alpha compare
IAI47_07000 -1.6 -9.1 UDP-glucose 4-epimerase GalE compare
IAI47_09055 -1.6 -7.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_10320 -1.6 -1.0 Rrf2 family transcriptional regulator compare
IAI47_13745 -1.6 -3.3 2-oxoglutarate dehydrogenase E1 component compare
IAI47_09675 -1.6 -2.3 YoaK family small membrane protein compare
IAI47_09245 -1.5 -3.5 YmiA family putative membrane protein compare
IAI47_09400 -1.5 -2.6 envelope stress response membrane protein PspB compare
IAI47_07005 -1.5 -4.5 glycosyltransferase family 4 protein compare
IAI47_05420 -1.5 -1.0 PTS glucose transporter subunit IIA compare
IAI47_05520 -1.5 -0.8 tRNA-Ala compare
IAI47_13740 -1.5 -1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_04505 -1.5 -4.1 transcriptional repressor MprA compare
IAI47_05755 -1.5 -2.9 hypothetical protein compare
IAI47_00465 -1.5 -1.0 ribosome-dependent GTPase TypA compare
IAI47_00835 -1.5 -3.3 cell division protein ZapB compare
IAI47_12645 -1.4 -3.6 porin OmpA compare
IAI47_14660 -1.4 -7.3 trigger factor compare
IAI47_05195 -1.4 -1.6 DnaA inactivator Hda compare
IAI47_03235 -1.4 -5.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_08700 -1.4 -3.8 RNA chaperone ProQ compare
IAI47_05155 -1.4 -9.3 polyphosphate kinase 1 compare
IAI47_02040 -1.4 -6.4 peptidylprolyl isomerase compare
IAI47_09235 -1.4 -1.3 type I DNA topoisomerase compare
IAI47_07025 -1.4 -4.6 glycosyltransferase family 4 protein compare
IAI47_19945 -1.4 -0.7 hypothetical protein compare
IAI47_00760 -1.4 -2.4 envelope stress response regulator transcription factor CpxR compare
IAI47_02725 -1.4 -6.5 gamma-glutamylcyclotransferase compare
IAI47_00505 -1.4 -4.3 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_15980 -1.4 -7.0 catabolite repressor/activator compare
IAI47_21765 -1.4 -1.7 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_10145 -1.4 -3.8 winged helix-turn-helix transcriptional regulator compare
IAI47_12175 -1.3 -2.0 anti-sigma-28 factor FlgM compare
IAI47_02515 -1.3 -3.9 transcriptional regulator ArgR compare
IAI47_13700 -1.3 -1.8 Tol-Pal system protein TolQ compare
IAI47_07470 -1.3 -2.2 AlpA family transcriptional regulator compare
IAI47_10430 -1.3 -2.2 hypothetical protein compare
IAI47_05765 -1.3 -1.2 hypothetical protein compare
IAI47_17020 -1.3 -2.1 30S ribosome-binding factor RbfA compare
IAI47_12760 -1.3 -6.7 porin OmpF compare
IAI47_01170 -1.3 -4.5 fluoride efflux transporter CrcB compare
IAI47_02345 -1.3 -1.2 5S ribosomal RNA compare
IAI47_06965 -1.3 -1.3 glycosyltransferase family 2 protein compare
IAI47_17580 -1.3 -4.5 hypothetical protein compare
IAI47_12625 -1.3 -5.8 YccF domain-containing protein compare
IAI47_15635 -1.2 -2.0 RNA polymerase-binding protein DksA compare
IAI47_00770 -1.2 -0.6 general stress protein compare
IAI47_17645 -1.2 -2.4 hypothetical protein compare
IAI47_12470 -1.2 -8.3 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_10775 -1.2 -3.4 ribonuclease T compare
IAI47_09210 -1.2 -4.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_12925 -1.2 -2.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_11375 -1.2 -1.4 hypothetical protein compare
IAI47_13195 -1.2 -4.6 DNA starvation/stationary phase protection protein Dps compare
IAI47_04425 -1.2 -6.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_20705 -1.2 -0.9 sulfur carrier protein ThiS compare
IAI47_13840 -1.2 -2.4 replication initiation negative regulator SeqA compare
IAI47_16430 -1.2 -2.1 histidine phosphatase family protein compare
IAI47_03615 -1.1 -6.1 glutathione synthase compare
IAI47_14150 -1.1 -6.7 AI-2E family transporter compare
IAI47_04895 -1.1 -2.2 pyridoxine 5'-phosphate synthase compare
IAI47_04950 -1.1 -5.3 nitrogen regulatory protein P-II compare
IAI47_05445 -1.1 -5.4 sulfate transporter CysZ compare
IAI47_03680 -1.1 -7.1 transketolase compare
IAI47_21880 -1.1 -0.4 ParA family protein compare
IAI47_18410 -1.1 -2.5 diaminopimelate epimerase compare
IAI47_21450 -1.1 -0.8 general stress protein compare
IAI47_18490 -1.1 -3.2 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_08850 -1.1 -3.3 septum site-determining protein MinD compare
IAI47_18705 -1.1 -6.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_14775 -1.1 -3.4 transcriptional regulator NrdR compare
IAI47_12370 -1.1 -1.7 acyl carrier protein compare
IAI47_05580 -1.1 -1.1 membrane protein YpdK compare
IAI47_10895 -1.1 -6.0 AI-2E family transporter YdiK compare
IAI47_13765 -1.1 -1.9 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_01535 -1.1 -3.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_00500 -1.1 -6.8 ATP-dependent DNA helicase RecG compare
IAI47_11880 -1.0 -1.2 hypothetical protein compare
IAI47_07165 -1.0 -1.3 exodeoxyribonuclease I compare
IAI47_08305 -1.0 -4.5 chemotaxis protein CheW compare
IAI47_01345 -1.0 -6.3 oligopeptidase A compare
IAI47_06475 -1.0 -3.9 transcriptional regulator RcsB compare
IAI47_11630 -1.0 -1.7 hypothetical protein compare
IAI47_00375 -1.0 -8.4 ribose operon transcriptional repressor RbsR compare
IAI47_07475 -1.0 -0.8 hypothetical protein compare
IAI47_11515 -1.0 -1.1 hypothetical protein compare
IAI47_09855 -1.0 -2.9 DUF2384 domain-containing protein compare
IAI47_19035 -1.0 -1.3 transcriptional regulator compare
IAI47_15810 -1.0 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_19550 -1.0 -1.3 DUF1471 domain-containing protein compare
IAI47_18405 -1.0 -3.5 DUF484 domain-containing protein compare
IAI47_15995 -1.0 -1.3 leu operon leader peptide compare
IAI47_17475 -1.0 -2.8 type VI secretion system contractile sheath small subunit compare
IAI47_03550 -1.0 -5.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_14555 -1.0 -2.8 hemolysin expression modulator Hha compare
IAI47_01765 -1.0 -5.1 DeoR/GlpR family transcriptional regulator compare
IAI47_08355 -1.0 -2.0 flagellar protein FlhE compare
IAI47_11420 -1.0 -1.3 hypothetical protein compare
IAI47_15895 -0.9 -1.3 secA regulator SecM compare
IAI47_03150 -0.9 -5.6 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_20540 -0.9 -2.2 TetR/AcrR family transcriptional regulator compare
IAI47_10435 -0.9 -2.8 transcription modulator YdgT compare
IAI47_06455 -0.9 -3.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_00660 -0.9 -5.5 putative lipopolysaccharide heptosyltransferase III compare


Specific Phenotypes

For 7 genes in this experiment

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms