Experiment set8S50 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -5.9 -3.1 NAD-dependent epimerase compare
IAI47_00655 -5.7 -6.2 glycosyltransferase family 4 protein compare
IAI47_17235 -4.9 -16.5 stringent starvation protein A compare
IAI47_08085 -4.7 -3.3 helix-turn-helix domain-containing protein compare
IAI47_07015 -4.2 -8.1 ABC transporter ATP-binding protein compare
IAI47_15600 -4.2 -2.9 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_13685 -4.2 -3.7 Tol-Pal system protein TolB compare
IAI47_10835 -4.2 -1.3 tRNA-Val compare
IAI47_05070 -4.2 -1.3 outer membrane protein assembly factor BamB compare
IAI47_07020 -4.0 -2.4 hypothetical protein compare
IAI47_09415 -4.0 -8.1 YcjX family protein compare
IAI47_01820 -4.0 -9.6 two-component system response regulator OmpR compare
IAI47_02345 -3.9 -1.7 5S ribosomal RNA compare
IAI47_13695 -3.9 -1.2 colicin uptake protein TolR compare
IAI47_15605 -3.8 -2.3 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_18215 -3.8 -2.3 Trk system potassium transporter TrkH compare
IAI47_18415 -3.7 -4.4 lipoprotein compare
IAI47_17185 -3.7 -3.6 RNA polymerase factor sigma-54 compare
IAI47_00735 -3.7 -2.5 protein-export chaperone SecB compare
IAI47_15970 -3.7 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_09100 -3.6 -10.1 cardiolipin synthase compare
IAI47_08445 -3.5 -1.8 Holliday junction branch migration protein RuvA compare
IAI47_14470 -3.5 -3.4 YbaB/EbfC family nucleoid-associated protein compare
IAI47_00430 -3.5 -14.8 DNA polymerase I compare
IAI47_11450 -3.5 -6.2 ankyrin repeat domain-containing protein compare
IAI47_09580 -3.4 -4.4 FNR family transcription factor compare
IAI47_09420 -3.4 -8.9 TIGR01620 family protein compare
IAI47_00760 -3.3 -4.5 envelope stress response regulator transcription factor CpxR compare
IAI47_09265 -3.3 -4.4 LapA family protein compare
IAI47_16995 -3.2 -3.0 protein YrbN compare
IAI47_09235 -3.2 -1.9 type I DNA topoisomerase compare
IAI47_02380 -3.2 -3.0 DNA-binding transcriptional regulator Fis compare
IAI47_13065 -3.1 -2.7 DUF1418 family protein compare
IAI47_03135 -3.1 -7.7 outer membrane channel protein TolC compare
IAI47_16085 -3.1 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18830 -3.0 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00515 -2.9 -2.6 DNA-directed RNA polymerase subunit omega compare
IAI47_18480 -2.8 -12.9 lipid III flippase WzxE compare
IAI47_09400 -2.8 -3.8 envelope stress response membrane protein PspB compare
IAI47_15635 -2.8 -4.0 RNA polymerase-binding protein DksA compare
IAI47_04300 -2.8 -5.6 recombinase RecA compare
IAI47_03375 -2.7 -9.4 peptide chain release factor 3 compare
IAI47_01825 -2.7 -9.7 two-component system sensor histidine kinase EnvZ compare
IAI47_08705 -2.7 -12.8 carboxy terminal-processing peptidase compare
IAI47_03820 -2.6 -3.6 site-specific tyrosine recombinase XerD compare
IAI47_09390 -2.6 -8.7 phage shock protein operon transcriptional activator compare
IAI47_18400 -2.6 -3.0 tyrosine recombinase XerC compare
IAI47_06320 -2.5 -7.8 phosphate acetyltransferase compare
IAI47_04800 -2.5 -1.1 RnfH family protein compare
IAI47_08440 -2.5 -1.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_07010 -2.5 -3.4 ABC transporter permease compare
IAI47_17020 -2.4 -3.2 30S ribosome-binding factor RbfA compare
IAI47_18530 -2.4 -2.1 thioredoxin TrxA compare
IAI47_13690 -2.3 -1.0 cell envelope integrity protein TolA compare
IAI47_08450 -2.3 -3.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_10840 -2.3 -4.1 pyruvate kinase PykF compare
IAI47_18520 -2.3 -15.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_04865 -2.3 -2.9 SoxR-reducing system protein RseC compare
IAI47_00675 -2.2 -15.3 glycosyltransferase family 9 protein compare
IAI47_07025 -2.2 -6.0 glycosyltransferase family 4 protein compare
IAI47_03240 -2.2 -5.0 TonB system transport protein ExbD compare
IAI47_11375 -2.2 -1.6 hypothetical protein compare
IAI47_18470 -2.2 -11.5 ECA oligosaccharide polymerase compare
IAI47_16600 -2.1 -1.5 tRNA-OTHER compare
IAI47_02585 -2.1 -4.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_02090 -2.1 -3.9 elongation factor Tu compare
IAI47_09405 -2.1 -4.8 envelope stress response membrane protein PspC compare
IAI47_04870 -2.0 -5.9 elongation factor 4 compare
IAI47_13950 -2.0 -1.7 PhoH family protein compare
IAI47_00870 -2.0 -0.8 50S ribosomal protein L31 compare
IAI47_03640 -2.0 -13.3 glycosyltransferase compare
IAI47_04835 -2.0 -7.2 ATP-dependent RNA helicase SrmB compare
IAI47_16520 -2.0 -8.8 hypothetical protein compare
IAI47_06245 -2.0 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05195 -2.0 -2.3 DnaA inactivator Hda compare
IAI47_00670 -2.0 -13.5 sugar glycosyltransferase compare
IAI47_08700 -1.9 -7.0 RNA chaperone ProQ compare
IAI47_13890 -1.9 -8.0 ROK family transcriptional regulator compare
IAI47_03645 -1.9 -12.5 O-antigen ligase family protein compare
IAI47_07350 -1.9 -0.8 hypothetical protein compare
IAI47_14555 -1.9 -3.3 hemolysin expression modulator Hha compare
IAI47_11310 -1.9 -3.6 redox-regulated ATPase YchF compare
IAI47_06325 -1.9 -6.1 acetate kinase compare
IAI47_01120 -1.9 -8.6 manganese efflux pump MntP compare
IAI47_04400 -1.9 -5.7 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17580 -1.8 -6.4 hypothetical protein compare
IAI47_15155 -1.8 -4.2 DUF943 family protein compare
IAI47_07905 -1.8 -0.8 Arc family DNA-binding protein compare
IAI47_21665 -1.8 -1.4 DUF333 domain-containing protein compare
IAI47_17215 -1.8 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_05155 -1.8 -11.6 polyphosphate kinase 1 compare
IAI47_06395 -1.8 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00875 -1.8 -1.7 met regulon transcriptional regulator MetJ compare
IAI47_20595 -1.7 -3.9 GhoT/OrtT family toxin compare
IAI47_09055 -1.7 -8.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00780 -1.7 -3.6 6-phosphofructokinase compare
IAI47_04335 -1.7 -2.0 tRNA-Arg compare
IAI47_13155 -1.7 -2.2 H-NS histone family protein compare
IAI47_13740 -1.7 -1.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_03235 -1.7 -5.1 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_07030 -1.7 -5.6 HAD family hydrolase compare
IAI47_18145 -1.7 -2.3 elongation factor Tu compare
IAI47_12880 -1.7 -10.7 formate C-acetyltransferase compare
IAI47_16990 -1.7 -4.0 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_11760 -1.6 -1.1 TonB-dependent siderophore receptor compare
IAI47_09900 -1.6 -2.4 type II toxin-antitoxin system antitoxin HipB compare
IAI47_00300 -1.6 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_17965 -1.6 -7.6 glucose-6-phosphate isomerase compare
IAI47_06965 -1.6 -1.4 glycosyltransferase family 2 protein compare
IAI47_14660 -1.6 -7.0 trigger factor compare
IAI47_13195 -1.6 -6.7 DNA starvation/stationary phase protection protein Dps compare
IAI47_09720 -1.6 -7.0 TetR/AcrR family transcriptional regulator compare
IAI47_09245 -1.6 -4.2 YmiA family putative membrane protein compare
IAI47_07000 -1.6 -7.7 UDP-glucose 4-epimerase GalE compare
IAI47_15485 -1.6 -1.3 molecular chaperone Skp compare
IAI47_01180 -1.6 -0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_04425 -1.6 -6.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_09210 -1.5 -5.5 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_18240 -1.5 -2.5 NAD(P)H-flavin reductase compare
IAI47_15980 -1.5 -8.0 catabolite repressor/activator compare
IAI47_21830 -1.5 -1.9 hypothetical protein compare
IAI47_07005 -1.5 -4.2 glycosyltransferase family 4 protein compare
IAI47_07890 -1.5 -3.0 DgsA anti-repressor MtfA compare
IAI47_01365 -1.5 -1.7 inorganic phosphate transporter PitA compare
IAI47_17005 -1.5 -5.6 polyribonucleotide nucleotidyltransferase compare
IAI47_12195 -1.4 -4.0 DUF480 domain-containing protein compare
IAI47_13570 -1.4 -2.3 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_10775 -1.4 -4.2 ribonuclease T compare
IAI47_18410 -1.4 -3.6 diaminopimelate epimerase compare
IAI47_04505 -1.4 -3.8 transcriptional repressor MprA compare
IAI47_08855 -1.4 -3.8 septum site-determining protein MinC compare
IAI47_01135 -1.4 -0.7 hypothetical protein compare
IAI47_14150 -1.4 -8.2 AI-2E family transporter compare
IAI47_06900 -1.4 -2.4 phosphatase PAP2 family protein compare
IAI47_12760 -1.4 -7.4 porin OmpF compare
IAI47_12470 -1.4 -8.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_19690 -1.4 -0.8 hypothetical protein compare
IAI47_17910 -1.4 -2.8 chorismate lyase compare
IAI47_21530 -1.4 -3.9 FeoA domain-containing protein compare
IAI47_16430 -1.4 -3.5 histidine phosphatase family protein compare
IAI47_02400 -1.4 -1.3 YhdT family protein compare
IAI47_11550 -1.3 -2.1 hypothetical protein compare
IAI47_05445 -1.3 -5.1 sulfate transporter CysZ compare
IAI47_03750 -1.3 -6.0 Xaa-Pro aminopeptidase compare
IAI47_04950 -1.3 -6.7 nitrogen regulatory protein P-II compare
IAI47_00465 -1.3 -0.9 ribosome-dependent GTPase TypA compare
IAI47_05420 -1.3 -0.8 PTS glucose transporter subunit IIA compare
IAI47_12625 -1.3 -4.8 YccF domain-containing protein compare
IAI47_03680 -1.3 -7.6 transketolase compare
IAI47_13050 -1.3 -2.8 YbjN domain-containing protein compare
IAI47_12175 -1.3 -2.2 anti-sigma-28 factor FlgM compare
IAI47_04705 -1.2 -1.0 hypothetical protein compare
IAI47_21765 -1.2 -1.6 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_12645 -1.2 -2.9 porin OmpA compare
IAI47_05580 -1.2 -1.1 membrane protein YpdK compare
IAI47_14075 -1.2 -1.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_01170 -1.2 -5.0 fluoride efflux transporter CrcB compare
IAI47_11610 -1.2 -5.1 serine/threonine-protein phosphatase compare
IAI47_13840 -1.2 -2.2 replication initiation negative regulator SeqA compare
IAI47_17035 -1.2 -2.3 ribosome maturation factor RimP compare
IAI47_12085 -1.2 -4.0 phosphate acyltransferase PlsX compare
IAI47_01345 -1.2 -7.6 oligopeptidase A compare
IAI47_11735 -1.2 -1.4 histidinol-phosphatase compare
IAI47_12985 -1.1 -2.6 heavy metal-binding domain-containing protein compare
IAI47_12885 -1.1 -4.4 pyruvate formate lyase 1-activating protein compare
IAI47_13745 -1.1 -2.6 2-oxoglutarate dehydrogenase E1 component compare
IAI47_11630 -1.1 -2.5 hypothetical protein compare
IAI47_09770 -1.1 -3.1 osmoprotectant ABC transporter permease OsmW compare
IAI47_04350 -1.1 -7.6 glutamate--cysteine ligase compare
IAI47_18435 -1.1 -6.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_17120 -1.1 -1.6 BolA family iron metabolism protein IbaG compare
IAI47_06910 -1.1 -2.8 dCTP deaminase compare
IAI47_06475 -1.1 -3.8 transcriptional regulator RcsB compare
IAI47_06565 -1.1 -1.4 YejL family protein compare
IAI47_18055 -1.1 -3.2 DNA-binding protein HU-alpha compare
IAI47_05850 -1.1 -3.3 NinF family protein compare
IAI47_20650 -1.1 -3.5 polyprenyl synthetase family protein compare
IAI47_09095 -1.1 -2.2 YciU family protein compare
IAI47_21880 -1.1 -0.4 ParA family protein compare
IAI47_06170 -1.1 -2.5 YfcL family protein compare
IAI47_09325 -1.1 -6.3 FdhF/YdeP family oxidoreductase compare
IAI47_08435 -1.1 -1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_01475 -1.1 -4.2 MurR/RpiR family transcriptional regulator compare
IAI47_08430 -1.1 -1.8 dihydroneopterin triphosphate diphosphatase compare
IAI47_15110 -1.1 -2.0 chromophore lyase compare
IAI47_05050 -1.1 -3.9 cytoskeleton protein RodZ compare
IAI47_04710 -1.1 -2.4 hypothetical protein compare
IAI47_03615 -1.0 -4.7 glutathione synthase compare
IAI47_10550 -1.0 -2.7 two-component-system connector protein YcgZ compare
IAI47_19725 -1.0 -3.0 chemotaxis protein compare
IAI47_16080 -1.0 -4.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_11200 -1.0 -2.5 DotU family type IV/VI secretion system protein compare
IAI47_08355 -1.0 -1.7 flagellar protein FlhE compare
IAI47_13700 -1.0 -2.5 Tol-Pal system protein TolQ compare
IAI47_19080 -1.0 -2.1 hypothetical protein compare
IAI47_02715 -1.0 -6.9 outer membrane protein assembly factor compare
IAI47_01325 -1.0 -6.4 glutathione-disulfide reductase compare
IAI47_01530 -1.0 -3.6 DUF1145 family protein compare
IAI47_10895 -1.0 -4.6 AI-2E family transporter YdiK compare
IAI47_20755 -1.0 -4.9 methionine synthase compare


Specific Phenotypes

For 5 genes in this experiment

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms