Experiment set8S5 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.5 -5.2 Tol-Pal system protein TolB compare
IAI47_00655 -6.3 -7.0 glycosyltransferase family 4 protein compare
IAI47_15635 -6.3 -4.4 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.6 -13.1 carboxy terminal-processing peptidase compare
IAI47_17000 -5.5 -11.7 lipoprotein NlpI compare
IAI47_08700 -5.5 -7.5 RNA chaperone ProQ compare
IAI47_08035 -5.4 -3.7 flagellar hook-basal body complex protein FliE compare
IAI47_18520 -5.3 -26.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12275 -5.2 -21.0 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_09040 -5.2 -3.1 NAD-dependent epimerase compare
IAI47_12280 -5.0 -13.4 glucan biosynthesis protein G compare
IAI47_13700 -4.9 -4.8 Tol-Pal system protein TolQ compare
IAI47_21600 -4.9 -3.9 EamA family transporter compare
IAI47_18480 -4.9 -16.3 lipid III flippase WzxE compare
IAI47_17560 -4.7 -2.8 ROK family transcriptional regulator compare
IAI47_13885 -4.5 -3.0 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08085 -4.5 -6.1 helix-turn-helix domain-containing protein compare
IAI47_09235 -4.5 -3.1 type I DNA topoisomerase compare
IAI47_18470 -4.4 -20.1 ECA oligosaccharide polymerase compare
IAI47_07010 -4.3 -3.1 ABC transporter permease compare
IAI47_12930 -4.2 -4.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_14075 -4.2 -4.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18055 -4.1 -7.8 DNA-binding protein HU-alpha compare
IAI47_13695 -4.1 -1.4 colicin uptake protein TolR compare
IAI47_11930 -4.1 -8.0 two-component system response regulator PhoP compare
IAI47_13950 -4.1 -2.8 PhoH family protein compare
IAI47_18400 -4.0 -2.8 tyrosine recombinase XerC compare
IAI47_12645 -4.0 -6.6 porin OmpA compare
IAI47_05070 -3.9 -1.3 outer membrane protein assembly factor BamB compare
IAI47_05090 -3.8 -6.3 hypothetical protein compare
IAI47_07030 -3.8 -9.5 HAD family hydrolase compare
IAI47_00675 -3.7 -19.0 glycosyltransferase family 9 protein compare
IAI47_13690 -3.6 -1.2 cell envelope integrity protein TolA compare
IAI47_05155 -3.6 -20.6 polyphosphate kinase 1 compare
IAI47_09580 -3.5 -5.2 FNR family transcription factor compare
IAI47_00930 -3.5 -13.5 DNA-binding transcriptional regulator OxyR compare
IAI47_07020 -3.4 -2.3 hypothetical protein compare
IAI47_13720 -3.4 -6.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_01750 -3.3 -8.9 glycerol-3-phosphate dehydrogenase compare
IAI47_03645 -3.3 -18.5 O-antigen ligase family protein compare
IAI47_17235 -3.3 -14.9 stringent starvation protein A compare
IAI47_03640 -3.3 -15.4 glycosyltransferase compare
IAI47_17965 -3.2 -16.6 glucose-6-phosphate isomerase compare
IAI47_07015 -3.2 -9.2 ABC transporter ATP-binding protein compare
IAI47_07025 -3.2 -8.8 glycosyltransferase family 4 protein compare
IAI47_13415 -3.2 -16.0 L,D-transpeptidase family protein compare
IAI47_10845 -3.2 -3.8 major outer membrane lipoprotein compare
IAI47_10520 -3.2 -4.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_13725 -3.2 -8.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_06965 -3.1 -2.8 glycosyltransferase family 2 protein compare
IAI47_05425 -3.1 -6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13405 -3.1 -9.6 DedA family protein compare
IAI47_06320 -3.1 -9.4 phosphate acetyltransferase compare
IAI47_15485 -3.0 -1.8 molecular chaperone Skp compare
IAI47_04300 -3.0 -7.5 recombinase RecA compare
IAI47_00940 -3.0 -11.5 HTH-type transcriptional repressor FabR compare
IAI47_17580 -3.0 -10.8 hypothetical protein compare
IAI47_08445 -2.9 -1.7 Holliday junction branch migration protein RuvA compare
IAI47_08450 -2.9 -5.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_02380 -2.8 -3.0 DNA-binding transcriptional regulator Fis compare
IAI47_13050 -2.8 -5.3 YbjN domain-containing protein compare
IAI47_09305 -2.7 -3.2 cyclic di-GMP phosphodiesterase compare
IAI47_00430 -2.7 -16.6 DNA polymerase I compare
IAI47_12885 -2.7 -10.9 pyruvate formate lyase 1-activating protein compare
IAI47_00670 -2.7 -16.1 sugar glycosyltransferase compare
IAI47_04505 -2.7 -10.1 transcriptional repressor MprA compare
IAI47_06450 -2.7 -5.6 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_14695 -2.7 -5.9 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_18490 -2.7 -6.4 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_14700 -2.6 -8.8 protoheme IX farnesyltransferase compare
IAI47_12925 -2.6 -5.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_14685 -2.5 -12.0 cytochrome o ubiquinol oxidase subunit I compare
IAI47_00755 -2.5 -10.1 envelope stress sensor histidine kinase CpxA compare
IAI47_21595 -2.5 -8.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_09360 -2.5 -1.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_03820 -2.5 -4.4 site-specific tyrosine recombinase XerD compare
IAI47_07000 -2.4 -10.2 UDP-glucose 4-epimerase GalE compare
IAI47_12880 -2.4 -16.8 formate C-acetyltransferase compare
IAI47_09245 -2.4 -5.4 YmiA family putative membrane protein compare
IAI47_03240 -2.4 -5.3 TonB system transport protein ExbD compare
IAI47_17155 -2.3 -11.0 calcium/sodium antiporter compare
IAI47_07005 -2.3 -4.9 glycosyltransferase family 4 protein compare
IAI47_09100 -2.3 -11.0 cardiolipin synthase compare
IAI47_11760 -2.3 -2.4 TonB-dependent siderophore receptor compare
IAI47_06455 -2.3 -7.1 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_17005 -2.2 -7.2 polyribonucleotide nucleotidyltransferase compare
IAI47_09055 -2.1 -12.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_04865 -2.1 -3.4 SoxR-reducing system protein RseC compare
IAI47_06325 -2.1 -6.7 acetate kinase compare
IAI47_11535 -2.0 -2.4 DcrB-related protein compare
IAI47_12565 -2.0 -11.6 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_14690 -2.0 -6.2 cytochrome o ubiquinol oxidase subunit III compare
IAI47_13890 -2.0 -9.2 ROK family transcriptional regulator compare
IAI47_14680 -2.0 -6.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_15980 -2.0 -8.8 catabolite repressor/activator compare
IAI47_00445 -2.0 -9.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_00760 -1.9 -4.1 envelope stress response regulator transcription factor CpxR compare
IAI47_05535 -1.9 -10.3 Nramp family divalent metal transporter compare
IAI47_11475 -1.9 -1.6 hypothetical protein compare
IAI47_11830 -1.9 -7.7 muramoyltetrapeptide carboxypeptidase compare
IAI47_00780 -1.9 -3.6 6-phosphofructokinase compare
IAI47_21610 -1.9 -8.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_21605 -1.8 -10.3 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_13065 -1.8 -2.7 DUF1418 family protein compare
IAI47_07980 -1.8 -8.1 flagellar type III secretion system pore protein FliP compare
IAI47_11935 -1.8 -11.0 two-component system sensor histidine kinase PhoQ compare
IAI47_00515 -1.7 -2.7 DNA-directed RNA polymerase subunit omega compare
IAI47_05035 -1.7 -3.0 nucleoside-diphosphate kinase compare
IAI47_15600 -1.7 -2.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_08285 -1.7 -8.5 flagellar transcriptional regulator FlhC compare
IAI47_03375 -1.6 -8.5 peptide chain release factor 3 compare
IAI47_06235 -1.6 -7.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_08280 -1.6 -7.2 flagellar transcriptional regulator FlhD compare
IAI47_12865 -1.6 -9.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_09750 -1.6 -7.0 ROK family transcriptional regulator compare
IAI47_10925 -1.6 -3.6 EAL domain-containing protein compare
IAI47_05520 -1.6 -1.3 tRNA-Ala compare
IAI47_03235 -1.5 -4.9 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_07970 -1.5 -5.9 flagellar type III secretion system protein FliR compare
IAI47_11450 -1.5 -4.6 ankyrin repeat domain-containing protein compare
IAI47_07180 -1.5 -6.1 DUF496 family protein compare
IAI47_01355 -1.5 -4.2 universal stress protein UspA compare
IAI47_10840 -1.5 -4.0 pyruvate kinase PykF compare
IAI47_06980 -1.5 -2.9 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_05195 -1.4 -2.1 DnaA inactivator Hda compare
IAI47_12140 -1.4 -6.1 flagellar basal-body rod protein FlgG compare
IAI47_12130 -1.4 -8.3 flagellar basal body P-ring protein FlgI compare
IAI47_12165 -1.4 -5.6 flagellar basal body rod protein FlgB compare
IAI47_04855 -1.4 -3.7 anti-sigma-E factor RseA compare
IAI47_12160 -1.4 -6.3 flagellar basal body rod protein FlgC compare
IAI47_18705 -1.4 -8.0 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_00775 -1.4 -8.3 CDF family cation-efflux transporter FieF compare
IAI47_10470 -1.4 -1.7 electron transport complex subunit E compare
IAI47_10340 -1.4 -6.1 mannose-6-phosphate isomerase compare
IAI47_08005 -1.4 -5.8 flagellar hook-length control protein FliK compare
IAI47_06135 -1.3 -3.2 phosphohistidine phosphatase SixA compare
IAI47_12470 -1.3 -9.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07995 -1.3 -7.4 flagellar motor switch protein FliM compare
IAI47_01780 -1.3 -2.1 Fe-S biogenesis protein NfuA compare
IAI47_08350 -1.3 -6.5 flagellar biosynthesis protein FlhA compare
IAI47_00465 -1.3 -1.8 ribosome-dependent GTPase TypA compare
IAI47_11610 -1.3 -5.2 serine/threonine-protein phosphatase compare
IAI47_21830 -1.3 -2.2 hypothetical protein compare
IAI47_04895 -1.3 -2.7 pyridoxine 5'-phosphate synthase compare
IAI47_13745 -1.3 -3.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_12135 -1.3 -7.6 flagellar basal body L-ring protein FlgH compare
IAI47_04435 -1.3 -9.3 ATP-dependent chaperone ClpB compare
IAI47_12145 -1.3 -4.5 flagellar basal body rod protein FlgF compare
IAI47_14590 -1.3 -9.1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_06565 -1.3 -1.5 YejL family protein compare
IAI47_08025 -1.3 -6.3 flagellar motor switch protein FliG compare
IAI47_14595 -1.3 -7.2 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_18830 -1.3 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_17215 -1.3 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_07990 -1.3 -3.2 flagellar motor switch protein FliN compare
IAI47_13475 -1.3 -2.5 molybdopterin synthase catalytic subunit MoaE compare
IAI47_14640 -1.3 -4.4 DNA-binding protein HU-beta compare
IAI47_02750 -1.3 -9.4 class 1 fructose-bisphosphatase compare
IAI47_00885 -1.3 -9.0 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_11995 -1.2 -4.1 beta-N-acetylhexosaminidase compare
IAI47_12150 -1.2 -8.2 flagellar hook protein FlgE compare
IAI47_18420 -1.2 -6.9 class I adenylate cyclase compare
IAI47_08440 -1.2 -1.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_11685 -1.2 -6.0 DotU family type VI secretion system protein compare
IAI47_08710 -1.2 -6.0 protease HtpX compare
IAI47_05810 -1.2 -1.8 hypothetical protein compare
IAI47_03680 -1.2 -7.5 transketolase compare
IAI47_00110 -1.2 -4.8 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_12790 -1.2 -0.8 chromosome partition protein MukE compare
IAI47_16520 -1.2 -5.2 hypothetical protein compare
IAI47_08030 -1.2 -7.5 flagellar M-ring protein FliF compare
IAI47_16055 -1.2 -7.9 RNA polymerase-associated protein RapA compare
IAI47_13370 -1.2 -9.0 beta-glucosidase BglX compare
IAI47_16840 -1.1 -5.2 carbamate kinase compare
IAI47_15345 -1.1 -8.7 murein transglycosylase D compare
IAI47_12125 -1.1 -6.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_18510 -1.1 -6.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI47_13390 -1.1 -7.2 mechanosensitive ion channel family protein compare
IAI47_18485 -1.1 -6.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_09435 -1.1 -5.6 GtrA family protein compare
IAI47_08845 -1.1 -1.5 cell division topological specificity factor MinE compare
IAI47_10320 -1.1 -0.7 Rrf2 family transcriptional regulator compare
IAI47_03765 -1.1 -3.3 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_07985 -1.1 -4.1 flagellar biosynthetic protein FliO compare
IAI47_11210 -1.1 -5.8 type VI secretion system-associated protein TagF compare
IAI47_09440 -1.1 -7.0 transcriptional regulator TyrR compare
IAI47_16080 -1.1 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12170 -1.1 -5.3 flagellar basal body P-ring formation protein FlgA compare
IAI47_18475 -1.1 -5.1 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_02035 -1.1 -3.3 YheV family putative metal-binding protein compare
IAI47_08345 -1.1 -6.7 flagellar type III secretion system protein FlhB compare
IAI47_08355 -1.1 -1.9 flagellar protein FlhE compare
IAI47_12155 -1.1 -6.9 flagellar hook assembly protein FlgD compare
IAI47_00500 -1.1 -7.2 ATP-dependent DNA helicase RecG compare
IAI47_19050 -1.1 -2.3 hypothetical protein compare
IAI47_03135 -1.1 -4.3 outer membrane channel protein TolC compare
IAI47_08020 -1.1 -5.0 flagellar assembly protein FliH compare
IAI47_01325 -1.1 -7.5 glutathione-disulfide reductase compare
IAI47_08160 -1.1 -5.1 RNA polymerase sigma factor FliA compare
IAI47_02400 -1.0 -1.1 YhdT family protein compare


Specific Phenotypes

For 8 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms