Experiment set8S46 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00655 -4.7 -6.7 glycosyltransferase family 4 protein compare
IAI47_09420 -4.5 -6.8 TIGR01620 family protein compare
IAI47_04800 -4.4 -1.3 RnfH family protein compare
IAI47_09040 -4.4 -2.3 NAD-dependent epimerase compare
IAI47_01820 -4.3 -8.8 two-component system response regulator OmpR compare
IAI47_17235 -4.3 -15.2 stringent starvation protein A compare
IAI47_05070 -4.3 -1.2 outer membrane protein assembly factor BamB compare
IAI47_13690 -4.2 -1.2 cell envelope integrity protein TolA compare
IAI47_04865 -4.2 -2.6 SoxR-reducing system protein RseC compare
IAI47_13695 -3.9 -1.1 colicin uptake protein TolR compare
IAI47_15605 -3.9 -2.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_19945 -3.8 -1.1 hypothetical protein compare
IAI47_09100 -3.7 -11.7 cardiolipin synthase compare
IAI47_00430 -3.7 -14.1 DNA polymerase I compare
IAI47_07015 -3.6 -8.7 ABC transporter ATP-binding protein compare
IAI47_08445 -3.6 -1.8 Holliday junction branch migration protein RuvA compare
IAI47_09580 -3.6 -4.5 FNR family transcription factor compare
IAI47_09415 -3.5 -11.3 YcjX family protein compare
IAI47_17185 -3.4 -5.7 RNA polymerase factor sigma-54 compare
IAI47_09235 -3.4 -1.9 type I DNA topoisomerase compare
IAI47_09390 -3.3 -8.3 phage shock protein operon transcriptional activator compare
IAI47_15110 -3.3 -6.9 chromophore lyase compare
IAI47_00780 -3.3 -2.2 6-phosphofructokinase compare
IAI47_04300 -3.2 -4.9 recombinase RecA compare
IAI47_08085 -3.2 -6.9 helix-turn-helix domain-containing protein compare
IAI47_09400 -3.1 -4.2 envelope stress response membrane protein PspB compare
IAI47_11375 -3.1 -2.1 hypothetical protein compare
IAI47_00760 -3.1 -5.2 envelope stress response regulator transcription factor CpxR compare
IAI47_18830 -3.1 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12175 -3.0 -2.1 anti-sigma-28 factor FlgM compare
IAI47_18400 -3.0 -2.9 tyrosine recombinase XerC compare
IAI47_00875 -3.0 -2.5 met regulon transcriptional regulator MetJ compare
IAI47_17560 -2.9 -1.8 ROK family transcriptional regulator compare
IAI47_07020 -2.9 -2.1 hypothetical protein compare
IAI47_00735 -2.9 -2.7 protein-export chaperone SecB compare
IAI47_01825 -2.9 -12.1 two-component system sensor histidine kinase EnvZ compare
IAI47_15970 -2.7 -3.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_11450 -2.7 -7.4 ankyrin repeat domain-containing protein compare
IAI47_03820 -2.7 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_16995 -2.7 -2.8 protein YrbN compare
IAI47_03375 -2.7 -9.9 peptide chain release factor 3 compare
IAI47_13685 -2.7 -2.5 Tol-Pal system protein TolB compare
IAI47_02090 -2.6 -3.5 elongation factor Tu compare
IAI47_08450 -2.5 -3.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_21665 -2.5 -2.2 DUF333 domain-containing protein compare
IAI47_11310 -2.5 -3.8 redox-regulated ATPase YchF compare
IAI47_04835 -2.5 -8.0 ATP-dependent RNA helicase SrmB compare
IAI47_18480 -2.5 -9.3 lipid III flippase WzxE compare
IAI47_00300 -2.5 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_13700 -2.4 -4.4 Tol-Pal system protein TolQ compare
IAI47_07480 -2.4 -2.8 hypothetical protein compare
IAI47_13840 -2.4 -1.6 replication initiation negative regulator SeqA compare
IAI47_17020 -2.3 -2.8 30S ribosome-binding factor RbfA compare
IAI47_18415 -2.3 -2.1 lipoprotein compare
IAI47_08700 -2.3 -6.6 RNA chaperone ProQ compare
IAI47_18470 -2.2 -13.0 ECA oligosaccharide polymerase compare
IAI47_04870 -2.2 -6.5 elongation factor 4 compare
IAI47_13950 -2.1 -1.7 PhoH family protein compare
IAI47_05195 -2.1 -2.5 DnaA inactivator Hda compare
IAI47_08440 -2.1 -2.1 crossover junction endodeoxyribonuclease RuvC compare
IAI47_16520 -2.1 -9.1 hypothetical protein compare
IAI47_17965 -2.1 -10.7 glucose-6-phosphate isomerase compare
IAI47_15635 -2.0 -2.6 RNA polymerase-binding protein DksA compare
IAI47_00675 -2.0 -14.3 glycosyltransferase family 9 protein compare
IAI47_13890 -2.0 -8.1 ROK family transcriptional regulator compare
IAI47_17005 -2.0 -7.2 polyribonucleotide nucleotidyltransferase compare
IAI47_14470 -2.0 -2.2 YbaB/EbfC family nucleoid-associated protein compare
IAI47_18145 -1.9 -2.1 elongation factor Tu compare
IAI47_01120 -1.9 -6.6 manganese efflux pump MntP compare
IAI47_18520 -1.9 -12.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_04705 -1.9 -1.2 hypothetical protein compare
IAI47_10320 -1.9 -0.9 Rrf2 family transcriptional regulator compare
IAI47_18055 -1.8 -5.4 DNA-binding protein HU-alpha compare
IAI47_09210 -1.8 -6.6 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_08705 -1.8 -10.0 carboxy terminal-processing peptidase compare
IAI47_00670 -1.8 -13.3 sugar glycosyltransferase compare
IAI47_09245 -1.8 -2.4 YmiA family putative membrane protein compare
IAI47_17900 -1.8 -1.4 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_03640 -1.7 -12.2 glycosyltransferase compare
IAI47_07010 -1.7 -2.3 ABC transporter permease compare
IAI47_04425 -1.7 -7.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_07360 -1.7 -2.0 hypothetical protein compare
IAI47_06320 -1.7 -5.4 phosphate acetyltransferase compare
IAI47_09405 -1.7 -5.7 envelope stress response membrane protein PspC compare
IAI47_17580 -1.7 -7.0 hypothetical protein compare
IAI47_12880 -1.7 -10.2 formate C-acetyltransferase compare
IAI47_09265 -1.7 -2.1 LapA family protein compare
IAI47_10840 -1.6 -4.1 pyruvate kinase PykF compare
IAI47_04400 -1.6 -5.8 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_06455 -1.6 -5.0 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_03645 -1.6 -10.5 O-antigen ligase family protein compare
IAI47_02515 -1.6 -5.1 transcriptional regulator ArgR compare
IAI47_07490 -1.6 -2.6 DNA-binding protein compare
IAI47_13925 -1.6 -1.4 tRNA-Met compare
IAI47_15810 -1.6 -3.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_18530 -1.5 -2.1 thioredoxin TrxA compare
IAI47_17205 -1.5 -1.2 PTS phosphocarrier protein NPr compare
IAI47_13050 -1.5 -3.0 YbjN domain-containing protein compare
IAI47_14150 -1.5 -8.3 AI-2E family transporter compare
IAI47_09055 -1.5 -8.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13155 -1.5 -1.5 H-NS histone family protein compare
IAI47_07030 -1.5 -6.2 HAD family hydrolase compare
IAI47_10775 -1.5 -4.3 ribonuclease T compare
IAI47_13195 -1.4 -6.2 DNA starvation/stationary phase protection protein Dps compare
IAI47_03135 -1.4 -5.4 outer membrane channel protein TolC compare
IAI47_12470 -1.4 -9.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_01170 -1.4 -4.6 fluoride efflux transporter CrcB compare
IAI47_05155 -1.4 -9.3 polyphosphate kinase 1 compare
IAI47_05050 -1.4 -4.6 cytoskeleton protein RodZ compare
IAI47_12885 -1.4 -5.0 pyruvate formate lyase 1-activating protein compare
IAI47_15980 -1.4 -7.6 catabolite repressor/activator compare
IAI47_06325 -1.4 -4.2 acetate kinase compare
IAI47_03615 -1.4 -5.1 glutathione synthase compare
IAI47_05035 -1.4 -2.0 nucleoside-diphosphate kinase compare
IAI47_17035 -1.4 -2.1 ribosome maturation factor RimP compare
IAI47_18490 -1.4 -3.7 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_02380 -1.4 -1.7 DNA-binding transcriptional regulator Fis compare
IAI47_15600 -1.4 -1.9 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_00465 -1.4 -0.9 ribosome-dependent GTPase TypA compare
IAI47_18240 -1.3 -2.4 NAD(P)H-flavin reductase compare
IAI47_11360 -1.3 -1.5 hypothetical protein compare
IAI47_13850 -1.3 -3.7 LexA regulated protein compare
IAI47_03235 -1.3 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_06450 -1.3 -3.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07350 -1.3 -0.6 hypothetical protein compare
IAI47_16085 -1.3 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02400 -1.3 -1.2 YhdT family protein compare
IAI47_11880 -1.3 -1.2 hypothetical protein compare
IAI47_15155 -1.2 -2.5 DUF943 family protein compare
IAI47_07165 -1.2 -1.6 exodeoxyribonuclease I compare
IAI47_13750 -1.2 -3.2 succinate dehydrogenase iron-sulfur subunit compare
IAI47_20595 -1.2 -2.4 GhoT/OrtT family toxin compare
IAI47_14805 -1.2 -4.8 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_04950 -1.2 -5.2 nitrogen regulatory protein P-II compare
IAI47_02585 -1.2 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_07025 -1.2 -4.2 glycosyltransferase family 4 protein compare
IAI47_11610 -1.2 -5.2 serine/threonine-protein phosphatase compare
IAI47_12760 -1.2 -6.4 porin OmpF compare
IAI47_21830 -1.2 -1.7 hypothetical protein compare
IAI47_05510 -1.2 -6.0 putative DNA-binding transcriptional regulator compare
IAI47_06595 -1.2 -2.8 hypothetical protein compare
IAI47_00505 -1.2 -3.9 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_11540 -1.2 -1.9 type VI secretion system tip protein VgrG compare
IAI47_18410 -1.2 -3.9 diaminopimelate epimerase compare
IAI47_10835 -1.2 -0.7 tRNA-Val compare
IAI47_07000 -1.2 -5.9 UDP-glucose 4-epimerase GalE compare
IAI47_03490 -1.1 -1.7 hypothetical protein compare
IAI47_06475 -1.1 -3.9 transcriptional regulator RcsB compare
IAI47_16990 -1.1 -2.4 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00460 -1.1 -1.6 glutamate--ammonia ligase compare
IAI47_17215 -1.1 -0.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_04805 -1.1 -4.2 outer membrane protein assembly factor BamE compare
IAI47_15895 -1.1 -2.3 secA regulator SecM compare
IAI47_06900 -1.1 -1.7 phosphatase PAP2 family protein compare
IAI47_00500 -1.1 -6.5 ATP-dependent DNA helicase RecG compare
IAI47_01830 -1.1 -7.1 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_11500 -1.1 -1.7 type VI secretion system tip protein VgrG compare
IAI47_14465 -1.1 -2.9 recombination protein RecR compare
IAI47_00515 -1.1 -1.3 DNA-directed RNA polymerase subunit omega compare
IAI47_11870 -1.1 -2.1 DUF2767 family protein compare
IAI47_16600 -1.1 -0.9 tRNA-OTHER compare
IAI47_18215 -1.0 -0.9 Trk system potassium transporter TrkH compare
IAI47_04350 -1.0 -7.1 glutamate--cysteine ligase compare
IAI47_18705 -1.0 -5.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_17165 -1.0 -5.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14810 -1.0 -4.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
IAI47_10255 -1.0 -2.9 isochorismatase family protein compare
IAI47_11520 -1.0 -2.8 type VI secretion system tip protein VgrG compare
IAI47_19825 -1.0 -4.1 EAL domain-containing protein compare
IAI47_06245 -1.0 -2.2 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_12085 -1.0 -3.4 phosphate acyltransferase PlsX compare
IAI47_07525 -1.0 -2.2 conjugal transfer protein TraD compare
IAI47_17075 -1.0 -3.0 ribosome assembly RNA-binding protein YhbY compare
IAI47_08850 -1.0 -2.4 septum site-determining protein MinD compare
IAI47_13065 -1.0 -0.9 DUF1418 family protein compare
IAI47_08035 -1.0 -1.3 flagellar hook-basal body complex protein FliE compare
IAI47_01780 -1.0 -1.7 Fe-S biogenesis protein NfuA compare
IAI47_14965 -1.0 -0.9 hypothetical protein compare
IAI47_21355 -1.0 -2.1 DUF3606 domain-containing protein compare
IAI47_09720 -1.0 -4.9 TetR/AcrR family transcriptional regulator compare
IAI47_04505 -1.0 -2.5 transcriptional repressor MprA compare
IAI47_13640 -1.0 -2.6 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_14080 -1.0 -3.1 hypothetical protein compare
IAI47_09900 -1.0 -1.7 type II toxin-antitoxin system antitoxin HipB compare
IAI47_01475 -0.9 -3.7 MurR/RpiR family transcriptional regulator compare
IAI47_00375 -0.9 -7.5 ribose operon transcriptional repressor RbsR compare
IAI47_03550 -0.9 -4.6 membrane-bound lytic murein transglycosylase MltC compare
IAI47_03150 -0.9 -5.5 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_03680 -0.9 -5.8 transketolase compare
IAI47_03070 -0.9 -4.3 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
IAI47_19690 -0.9 -0.8 hypothetical protein compare
IAI47_15285 -0.9 -2.4 oxalurate catabolism protein HpxX compare
IAI47_21610 -0.9 -5.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_14660 -0.9 -4.6 trigger factor compare
IAI47_04110 -0.9 -7.7 two-component sensor histidine kinase BarA compare
IAI47_06240 -0.9 -4.0 aspartate-semialdehyde dehydrogenase compare
IAI47_12275 -0.9 -6.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_00660 -0.9 -5.3 putative lipopolysaccharide heptosyltransferase III compare
IAI47_09395 -0.9 -1.8 phage shock protein PspA compare
IAI47_17860 -0.9 -3.2 envelope stress response protein PspG compare


Specific Phenotypes

For 4 genes in this experiment

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms