Experiment set8S44 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00515 -5.3 -3.5 DNA-directed RNA polymerase subunit omega compare
IAI47_02400 -4.7 -2.4 YhdT family protein compare
IAI47_09040 -4.4 -2.9 NAD-dependent epimerase compare
IAI47_05070 -4.4 -1.3 outer membrane protein assembly factor BamB compare
IAI47_08085 -4.4 -6.0 helix-turn-helix domain-containing protein compare
IAI47_13690 -4.3 -1.3 cell envelope integrity protein TolA compare
IAI47_13695 -4.0 -1.2 colicin uptake protein TolR compare
IAI47_08445 -4.0 -2.0 Holliday junction branch migration protein RuvA compare
IAI47_16995 -3.4 -3.1 protein YrbN compare
IAI47_09580 -3.2 -5.2 FNR family transcription factor compare
IAI47_00655 -2.8 -5.2 glycosyltransferase family 4 protein compare
IAI47_04300 -2.8 -6.3 recombinase RecA compare
IAI47_15605 -2.8 -2.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_11450 -2.8 -7.6 ankyrin repeat domain-containing protein compare
IAI47_06320 -2.7 -8.6 phosphate acetyltransferase compare
IAI47_05520 -2.7 -1.1 tRNA-Ala compare
IAI47_05425 -2.5 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_15970 -2.4 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_00760 -2.4 -5.4 envelope stress response regulator transcription factor CpxR compare
IAI47_01365 -2.4 -1.6 inorganic phosphate transporter PitA compare
IAI47_18530 -2.4 -2.9 thioredoxin TrxA compare
IAI47_02090 -2.4 -4.2 elongation factor Tu compare
IAI47_12645 -2.4 -5.7 porin OmpA compare
IAI47_12920 -2.3 -4.4 thioredoxin-disulfide reductase compare
IAI47_17035 -2.3 -3.2 ribosome maturation factor RimP compare
IAI47_07350 -2.3 -1.0 hypothetical protein compare
IAI47_15485 -2.3 -1.8 molecular chaperone Skp compare
IAI47_03375 -2.3 -9.9 peptide chain release factor 3 compare
IAI47_00780 -2.3 -3.7 6-phosphofructokinase compare
IAI47_09055 -2.2 -12.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_15110 -2.2 -5.9 chromophore lyase compare
IAI47_07930 -2.2 -1.3 DUF2158 domain-containing protein compare
IAI47_06325 -2.2 -7.2 acetate kinase compare
IAI47_12880 -2.2 -14.4 formate C-acetyltransferase compare
IAI47_18830 -2.1 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04400 -2.1 -6.9 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_10825 -2.1 -1.9 tRNA-Val compare
IAI47_08450 -2.0 -4.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06360 -2.0 -2.4 NADH-quinone oxidoreductase subunit A compare
IAI47_04835 -2.0 -8.3 ATP-dependent RNA helicase SrmB compare
IAI47_14470 -2.0 -2.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_01780 -2.0 -2.8 Fe-S biogenesis protein NfuA compare
IAI47_13685 -2.0 -2.7 Tol-Pal system protein TolB compare
IAI47_00870 -2.0 -0.8 50S ribosomal protein L31 compare
IAI47_18145 -1.9 -2.3 elongation factor Tu compare
IAI47_08440 -1.9 -2.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_11310 -1.9 -4.5 redox-regulated ATPase YchF compare
IAI47_09235 -1.8 -1.5 type I DNA topoisomerase compare
IAI47_17560 -1.8 -1.2 ROK family transcriptional regulator compare
IAI47_02345 -1.8 -1.5 5S ribosomal RNA compare
IAI47_07010 -1.8 -3.2 ABC transporter permease compare
IAI47_13310 -1.8 -5.2 MerR family transcriptional regulator compare
IAI47_10840 -1.8 -4.8 pyruvate kinase PykF compare
IAI47_03820 -1.7 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_06380 -1.7 -2.5 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_17020 -1.7 -2.6 30S ribosome-binding factor RbfA compare
IAI47_03240 -1.7 -4.6 TonB system transport protein ExbD compare
IAI47_13475 -1.6 -3.3 molybdopterin synthase catalytic subunit MoaE compare
IAI47_06455 -1.6 -5.3 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_15810 -1.6 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_04425 -1.6 -7.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_18400 -1.6 -2.6 tyrosine recombinase XerC compare
IAI47_09245 -1.6 -2.6 YmiA family putative membrane protein compare
IAI47_17005 -1.6 -6.7 polyribonucleotide nucleotidyltransferase compare
IAI47_05195 -1.6 -2.2 DnaA inactivator Hda compare
IAI47_13885 -1.6 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_07360 -1.6 -2.4 hypothetical protein compare
IAI47_17965 -1.6 -7.0 glucose-6-phosphate isomerase compare
IAI47_15595 -1.6 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_17215 -1.5 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_10320 -1.5 -1.2 Rrf2 family transcriptional regulator compare
IAI47_13950 -1.5 -1.6 PhoH family protein compare
IAI47_09240 -1.5 -3.1 HTH-type transcriptional regulator CysB compare
IAI47_15880 -1.5 -3.0 DNA gyrase inhibitor YacG compare
IAI47_13765 -1.5 -1.9 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_13195 -1.4 -6.9 DNA starvation/stationary phase protection protein Dps compare
IAI47_08590 -1.4 -3.6 hypothetical protein compare
IAI47_15155 -1.4 -2.5 DUF943 family protein compare
IAI47_12885 -1.4 -5.6 pyruvate formate lyase 1-activating protein compare
IAI47_02040 -1.4 -6.2 peptidylprolyl isomerase compare
IAI47_06655 -1.4 -2.9 1-phosphofructokinase compare
IAI47_12175 -1.4 -1.9 anti-sigma-28 factor FlgM compare
IAI47_13700 -1.4 -2.8 Tol-Pal system protein TolQ compare
IAI47_01820 -1.4 -6.4 two-component system response regulator OmpR compare
IAI47_05765 -1.4 -2.0 hypothetical protein compare
IAI47_04705 -1.3 -1.1 hypothetical protein compare
IAI47_03235 -1.3 -3.8 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_00465 -1.3 -0.9 ribosome-dependent GTPase TypA compare
IAI47_14805 -1.3 -5.4 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_12060 -1.3 -3.7 beta-ketoacyl-ACP synthase II compare
IAI47_02380 -1.3 -1.7 DNA-binding transcriptional regulator Fis compare
IAI47_16405 -1.3 -2.7 siderophore-iron reductase FhuF compare
IAI47_18840 -1.3 -1.9 membrane protein insertion efficiency factor YidD compare
IAI47_11760 -1.3 -1.0 TonB-dependent siderophore receptor compare
IAI47_06370 -1.2 -3.7 NADH-quinone oxidoreductase subunit C/D compare
IAI47_07015 -1.2 -5.3 ABC transporter ATP-binding protein compare
IAI47_11360 -1.2 -2.8 hypothetical protein compare
IAI47_11220 -1.2 -5.5 serine/threonine-protein phosphatase compare
IAI47_04950 -1.2 -6.3 nitrogen regulatory protein P-II compare
IAI47_18055 -1.2 -3.9 DNA-binding protein HU-alpha compare
IAI47_17900 -1.2 -0.9 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_00300 -1.2 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_17120 -1.2 -1.3 BolA family iron metabolism protein IbaG compare
IAI47_06415 -1.2 -3.3 NADH-quinone oxidoreductase subunit M compare
IAI47_02725 -1.2 -3.6 gamma-glutamylcyclotransferase compare
IAI47_11870 -1.1 -2.4 DUF2767 family protein compare
IAI47_06400 -1.1 -1.7 NADH-quinone oxidoreductase subunit J compare
IAI47_07000 -1.1 -6.6 UDP-glucose 4-epimerase GalE compare
IAI47_16990 -1.1 -2.8 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_18705 -1.1 -6.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_01750 -1.1 -4.3 glycerol-3-phosphate dehydrogenase compare
IAI47_06420 -1.1 -2.9 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_03680 -1.1 -6.5 transketolase compare
IAI47_15305 -1.1 -2.7 allantoin racemase compare
IAI47_15980 -1.1 -6.4 catabolite repressor/activator compare
IAI47_13745 -1.1 -2.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_18675 -1.1 -4.5 MarR family transcriptional regulator compare
IAI47_18480 -1.1 -6.9 lipid III flippase WzxE compare
IAI47_19690 -1.1 -1.0 hypothetical protein compare
IAI47_00430 -1.1 -7.8 DNA polymerase I compare
IAI47_05035 -1.1 -2.1 nucleoside-diphosphate kinase compare
IAI47_03615 -1.1 -5.2 glutathione synthase compare
IAI47_11930 -1.1 -4.2 two-component system response regulator PhoP compare
IAI47_00770 -1.1 -0.5 general stress protein compare
IAI47_18415 -1.1 -2.9 lipoprotein compare
IAI47_03135 -1.1 -4.7 outer membrane channel protein TolC compare
IAI47_12665 -1.0 -2.8 ribosome modulation factor compare
IAI47_11610 -1.0 -4.0 serine/threonine-protein phosphatase compare
IAI47_15635 -1.0 -1.9 RNA polymerase-binding protein DksA compare
IAI47_04350 -1.0 -6.8 glutamate--cysteine ligase compare
IAI47_05150 -1.0 -5.0 exopolyphosphatase compare
IAI47_02585 -1.0 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_11540 -1.0 -1.2 type VI secretion system tip protein VgrG compare
IAI47_13065 -1.0 -1.1 DUF1418 family protein compare
IAI47_15105 -1.0 -2.3 hypothetical protein compare
IAI47_16520 -1.0 -4.8 hypothetical protein compare
IAI47_13840 -1.0 -2.0 replication initiation negative regulator SeqA compare
IAI47_19035 -1.0 -1.7 transcriptional regulator compare
IAI47_03805 -1.0 -3.2 FAD assembly factor SdhE compare
IAI47_07030 -1.0 -4.0 HAD family hydrolase compare
IAI47_06475 -1.0 -3.2 transcriptional regulator RcsB compare
IAI47_06410 -1.0 -2.9 NADH-quinone oxidoreductase subunit L compare
IAI47_18540 -0.9 -3.4 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_09210 -0.9 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_05755 -0.9 -2.3 hypothetical protein compare
IAI47_10545 -0.9 -2.1 hypothetical protein compare
IAI47_06980 -0.9 -1.6 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_13545 -0.9 -4.7 6-phosphogluconolactonase compare
IAI47_01125 -0.9 -2.5 stress response protein AzuC compare
IAI47_12925 -0.9 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_05745 -0.9 -1.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_05630 -0.9 -1.3 hypothetical protein compare
IAI47_04800 -0.9 -0.6 RnfH family protein compare
IAI47_08305 -0.9 -4.0 chemotaxis protein CheW compare
IAI47_05490 -0.9 -2.3 tRNA-Val compare
IAI47_18215 -0.9 -0.9 Trk system potassium transporter TrkH compare
IAI47_00675 -0.9 -6.9 glycosyltransferase family 9 protein compare
IAI47_03610 -0.9 -2.3 YqgE/AlgH family protein compare
IAI47_03550 -0.9 -5.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09440 -0.9 -4.6 transcriptional regulator TyrR compare
IAI47_09360 -0.9 -0.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_16055 -0.9 -5.6 RNA polymerase-associated protein RapA compare
IAI47_04855 -0.9 -2.6 anti-sigma-E factor RseA compare
IAI47_18420 -0.9 -5.6 class I adenylate cyclase compare
IAI47_07020 -0.9 -1.0 hypothetical protein compare
IAI47_10925 -0.9 -1.5 EAL domain-containing protein compare
IAI47_01715 -0.9 -3.5 malonate decarboxylase holo-ACP synthase compare
IAI47_00940 -0.9 -4.7 HTH-type transcriptional repressor FabR compare
IAI47_07025 -0.9 -3.0 glycosyltransferase family 4 protein compare
IAI47_04870 -0.8 -2.9 elongation factor 4 compare
IAI47_14465 -0.8 -3.3 recombination protein RecR compare
IAI47_05690 -0.8 -2.3 hypothetical protein compare
IAI47_13890 -0.8 -4.3 ROK family transcriptional regulator compare
IAI47_00670 -0.8 -6.6 sugar glycosyltransferase compare
IAI47_04805 -0.8 -2.8 outer membrane protein assembly factor BamE compare
IAI47_12355 -0.8 -1.1 hydroxymyristoyl-ACP dehydratase compare
IAI47_06450 -0.8 -2.8 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_11045 -0.8 -3.2 hypothetical protein compare
IAI47_01825 -0.8 -3.3 two-component system sensor histidine kinase EnvZ compare
IAI47_00735 -0.8 -1.0 protein-export chaperone SecB compare
IAI47_16080 -0.8 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_13480 -0.8 -1.6 molybdopterin synthase sulfur carrier subunit compare
IAI47_13050 -0.8 -1.9 YbjN domain-containing protein compare
IAI47_00875 -0.8 -0.8 met regulon transcriptional regulator MetJ compare
IAI47_09855 -0.8 -2.9 DUF2384 domain-containing protein compare
IAI47_14985 -0.8 -3.0 hypothetical protein compare
IAI47_18470 -0.8 -6.2 ECA oligosaccharide polymerase compare
IAI47_09480 -0.8 -1.7 hypothetical protein compare
IAI47_18520 -0.8 -5.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_06395 -0.8 -0.9 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_11210 -0.8 -3.8 type VI secretion system-associated protein TagF compare
IAI47_15600 -0.8 -1.5 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_06900 -0.8 -1.5 phosphatase PAP2 family protein compare
IAI47_07475 -0.8 -0.7 hypothetical protein compare
IAI47_00755 -0.8 -5.0 envelope stress sensor histidine kinase CpxA compare
IAI47_20295 -0.8 -3.6 DUF1427 family protein compare
IAI47_00505 -0.8 -3.3 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07790 -0.8 -1.0 ribose 1,5-bisphosphokinase compare
IAI47_20850 -0.8 -2.1 TetR/AcrR family transcriptional regulator compare
IAI47_17235 -0.8 -5.4 stringent starvation protein A compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms