Experiment set8S4 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.5 -5.1 Tol-Pal system protein TolB compare
IAI47_15635 -6.3 -4.3 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.7 -13.2 carboxy terminal-processing peptidase compare
IAI47_13700 -5.4 -3.7 Tol-Pal system protein TolQ compare
IAI47_08700 -5.3 -8.1 RNA chaperone ProQ compare
IAI47_09580 -5.0 -4.9 FNR family transcription factor compare
IAI47_18520 -4.9 -22.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_18055 -4.8 -9.0 DNA-binding protein HU-alpha compare
IAI47_08085 -4.6 -5.5 helix-turn-helix domain-containing protein compare
IAI47_12275 -4.6 -23.6 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_18480 -4.6 -17.4 lipid III flippase WzxE compare
IAI47_18470 -4.6 -20.3 ECA oligosaccharide polymerase compare
IAI47_17000 -4.4 -16.6 lipoprotein NlpI compare
IAI47_13720 -4.3 -5.9 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12280 -4.3 -16.4 glucan biosynthesis protein G compare
IAI47_05090 -4.2 -5.7 hypothetical protein compare
IAI47_12645 -4.1 -6.2 porin OmpA compare
IAI47_07025 -4.1 -9.6 glycosyltransferase family 4 protein compare
IAI47_13695 -4.0 -1.4 colicin uptake protein TolR compare
IAI47_21600 -4.0 -3.0 EamA family transporter compare
IAI47_10845 -4.0 -5.4 major outer membrane lipoprotein compare
IAI47_09040 -3.9 -2.9 NAD-dependent epimerase compare
IAI47_12930 -3.9 -4.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05155 -3.9 -22.6 polyphosphate kinase 1 compare
IAI47_05070 -3.8 -1.3 outer membrane protein assembly factor BamB compare
IAI47_00655 -3.8 -5.6 glycosyltransferase family 4 protein compare
IAI47_13725 -3.7 -8.2 cytochrome ubiquinol oxidase subunit I compare
IAI47_17235 -3.6 -15.4 stringent starvation protein A compare
IAI47_13690 -3.6 -1.2 cell envelope integrity protein TolA compare
IAI47_12925 -3.6 -4.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_07010 -3.5 -3.5 ABC transporter permease compare
IAI47_17580 -3.5 -11.6 hypothetical protein compare
IAI47_07030 -3.4 -10.7 HAD family hydrolase compare
IAI47_07020 -3.4 -2.3 hypothetical protein compare
IAI47_07015 -3.4 -8.8 ABC transporter ATP-binding protein compare
IAI47_04300 -3.3 -6.6 recombinase RecA compare
IAI47_21595 -3.2 -10.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_00930 -3.2 -13.1 DNA-binding transcriptional regulator OxyR compare
IAI47_07005 -3.1 -6.5 glycosyltransferase family 4 protein compare
IAI47_05425 -3.0 -5.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_15485 -3.0 -1.7 molecular chaperone Skp compare
IAI47_00940 -3.0 -10.7 HTH-type transcriptional repressor FabR compare
IAI47_00675 -3.0 -17.2 glycosyltransferase family 9 protein compare
IAI47_03640 -2.9 -16.9 glycosyltransferase compare
IAI47_03645 -2.9 -18.0 O-antigen ligase family protein compare
IAI47_14700 -2.8 -8.9 protoheme IX farnesyltransferase compare
IAI47_17965 -2.8 -13.9 glucose-6-phosphate isomerase compare
IAI47_13405 -2.8 -9.3 DedA family protein compare
IAI47_05195 -2.7 -3.6 DnaA inactivator Hda compare
IAI47_14695 -2.7 -5.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_00670 -2.7 -17.1 sugar glycosyltransferase compare
IAI47_03820 -2.6 -4.4 site-specific tyrosine recombinase XerD compare
IAI47_18400 -2.6 -3.5 tyrosine recombinase XerC compare
IAI47_13745 -2.6 -5.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_00430 -2.6 -16.1 DNA polymerase I compare
IAI47_14685 -2.6 -12.0 cytochrome o ubiquinol oxidase subunit I compare
IAI47_09055 -2.6 -14.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06450 -2.5 -5.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_01750 -2.5 -7.9 glycerol-3-phosphate dehydrogenase compare
IAI47_06455 -2.5 -7.0 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_09100 -2.5 -12.0 cardiolipin synthase compare
IAI47_06320 -2.5 -7.8 phosphate acetyltransferase compare
IAI47_00755 -2.4 -9.9 envelope stress sensor histidine kinase CpxA compare
IAI47_06325 -2.4 -7.7 acetate kinase compare
IAI47_14690 -2.4 -6.9 cytochrome o ubiquinol oxidase subunit III compare
IAI47_09235 -2.4 -2.5 type I DNA topoisomerase compare
IAI47_00770 -2.2 -1.1 general stress protein compare
IAI47_04505 -2.2 -9.0 transcriptional repressor MprA compare
IAI47_00780 -2.2 -4.1 6-phosphofructokinase compare
IAI47_17215 -2.2 -1.5 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13415 -2.2 -11.5 L,D-transpeptidase family protein compare
IAI47_13740 -2.2 -1.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_12880 -2.2 -15.2 formate C-acetyltransferase compare
IAI47_09305 -2.1 -3.7 cyclic di-GMP phosphodiesterase compare
IAI47_03135 -2.1 -7.6 outer membrane channel protein TolC compare
IAI47_13890 -2.1 -8.7 ROK family transcriptional regulator compare
IAI47_10520 -2.1 -3.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_18490 -2.1 -3.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_03375 -2.0 -9.6 peptide chain release factor 3 compare
IAI47_12885 -2.0 -7.6 pyruvate formate lyase 1-activating protein compare
IAI47_00445 -2.0 -10.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_07165 -2.0 -2.2 exodeoxyribonuclease I compare
IAI47_12565 -2.0 -12.3 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08845 -2.0 -1.5 cell division topological specificity factor MinE compare
IAI47_06565 -1.9 -2.2 YejL family protein compare
IAI47_08445 -1.9 -1.5 Holliday junction branch migration protein RuvA compare
IAI47_02380 -1.9 -2.9 DNA-binding transcriptional regulator Fis compare
IAI47_21605 -1.9 -11.5 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_07000 -1.9 -8.6 UDP-glucose 4-epimerase GalE compare
IAI47_05050 -1.8 -4.4 cytoskeleton protein RodZ compare
IAI47_03240 -1.8 -4.7 TonB system transport protein ExbD compare
IAI47_06135 -1.8 -4.3 phosphohistidine phosphatase SixA compare
IAI47_00515 -1.8 -2.3 DNA-directed RNA polymerase subunit omega compare
IAI47_17005 -1.8 -7.0 polyribonucleotide nucleotidyltransferase compare
IAI47_10470 -1.8 -2.0 electron transport complex subunit E compare
IAI47_08850 -1.8 -5.8 septum site-determining protein MinD compare
IAI47_02350 -1.8 -1.3 tRNA-Thr compare
IAI47_15600 -1.8 -2.8 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_16995 -1.8 -2.2 protein YrbN compare
IAI47_21610 -1.8 -8.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_14945 -1.8 -3.4 pyrroline-5-carboxylate reductase compare
IAI47_05745 -1.8 -2.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_13840 -1.7 -3.5 replication initiation negative regulator SeqA compare
IAI47_08710 -1.7 -7.6 protease HtpX compare
IAI47_13050 -1.7 -4.3 YbjN domain-containing protein compare
IAI47_17155 -1.7 -8.5 calcium/sodium antiporter compare
IAI47_11450 -1.7 -5.5 ankyrin repeat domain-containing protein compare
IAI47_19550 -1.6 -1.8 DUF1471 domain-containing protein compare
IAI47_13885 -1.6 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_09360 -1.6 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_10320 -1.6 -1.0 Rrf2 family transcriptional regulator compare
IAI47_04865 -1.6 -2.2 SoxR-reducing system protein RseC compare
IAI47_13950 -1.6 -1.6 PhoH family protein compare
IAI47_11760 -1.6 -2.1 TonB-dependent siderophore receptor compare
IAI47_14680 -1.6 -5.6 cytochrome o ubiquinol oxidase subunit II compare
IAI47_09245 -1.6 -2.6 YmiA family putative membrane protein compare
IAI47_15605 -1.5 -1.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_05535 -1.5 -8.9 Nramp family divalent metal transporter compare
IAI47_01355 -1.5 -4.7 universal stress protein UspA compare
IAI47_07980 -1.5 -7.0 flagellar type III secretion system pore protein FliP compare
IAI47_08280 -1.5 -5.9 flagellar transcriptional regulator FlhD compare
IAI47_11935 -1.5 -10.2 two-component system sensor histidine kinase PhoQ compare
IAI47_08440 -1.4 -1.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_08355 -1.4 -3.1 flagellar protein FlhE compare
IAI47_08035 -1.4 -2.0 flagellar hook-basal body complex protein FliE compare
IAI47_15980 -1.4 -8.0 catabolite repressor/activator compare
IAI47_05035 -1.4 -2.7 nucleoside-diphosphate kinase compare
IAI47_20595 -1.4 -4.2 GhoT/OrtT family toxin compare
IAI47_07970 -1.4 -6.3 flagellar type III secretion system protein FliR compare
IAI47_08285 -1.4 -7.5 flagellar transcriptional regulator FlhC compare
IAI47_03680 -1.4 -8.6 transketolase compare
IAI47_11930 -1.4 -3.7 two-component system response regulator PhoP compare
IAI47_11610 -1.4 -6.0 serine/threonine-protein phosphatase compare
IAI47_00775 -1.4 -8.9 CDF family cation-efflux transporter FieF compare
IAI47_08005 -1.4 -7.0 flagellar hook-length control protein FliK compare
IAI47_12470 -1.4 -9.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_00465 -1.3 -1.3 ribosome-dependent GTPase TypA compare
IAI47_11995 -1.3 -5.0 beta-N-acetylhexosaminidase compare
IAI47_12135 -1.3 -9.2 flagellar basal body L-ring protein FlgH compare
IAI47_16520 -1.3 -7.0 hypothetical protein compare
IAI47_09435 -1.3 -6.1 GtrA family protein compare
IAI47_13850 -1.3 -4.1 LexA regulated protein compare
IAI47_07990 -1.3 -4.2 flagellar motor switch protein FliN compare
IAI47_12130 -1.3 -8.7 flagellar basal body P-ring protein FlgI compare
IAI47_17255 -1.3 -1.7 DUF1043 family protein compare
IAI47_11675 -1.3 -5.6 type VI secretion system-associated protein TagF compare
IAI47_11830 -1.3 -5.6 muramoyltetrapeptide carboxypeptidase compare
IAI47_05790 -1.3 -3.7 hypothetical protein compare
IAI47_11690 -1.3 -6.3 type VI secretion system baseplate subunit TssK compare
IAI47_00870 -1.3 -0.9 50S ribosomal protein L31 compare
IAI47_10925 -1.3 -3.3 EAL domain-containing protein compare
IAI47_06675 -1.3 -2.9 DUF1232 domain-containing protein compare
IAI47_08450 -1.2 -3.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_07480 -1.2 -2.0 hypothetical protein compare
IAI47_07180 -1.2 -4.7 DUF496 family protein compare
IAI47_12145 -1.2 -5.0 flagellar basal body rod protein FlgF compare
IAI47_16055 -1.2 -8.5 RNA polymerase-associated protein RapA compare
IAI47_00760 -1.2 -3.4 envelope stress response regulator transcription factor CpxR compare
IAI47_13390 -1.2 -7.3 mechanosensitive ion channel family protein compare
IAI47_18485 -1.2 -7.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_05520 -1.2 -1.0 tRNA-Ala compare
IAI47_12125 -1.2 -6.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_14590 -1.2 -8.1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_11220 -1.2 -4.6 serine/threonine-protein phosphatase compare
IAI47_09240 -1.2 -2.5 HTH-type transcriptional regulator CysB compare
IAI47_14075 -1.2 -2.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_18420 -1.2 -6.9 class I adenylate cyclase compare
IAI47_14640 -1.2 -4.8 DNA-binding protein HU-beta compare
IAI47_14555 -1.1 -3.6 hemolysin expression modulator Hha compare
IAI47_21655 -1.1 -0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_03235 -1.1 -3.8 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_18410 -1.1 -2.8 diaminopimelate epimerase compare
IAI47_18580 -1.1 -7.9 insulinase family protein compare
IAI47_07975 -1.1 -3.8 flagellar biosynthesis protein FliQ compare
IAI47_11685 -1.1 -6.0 DotU family type VI secretion system protein compare
IAI47_00505 -1.1 -4.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_01650 -1.1 -6.5 gluconate operon transcriptional repressor GntR compare
IAI47_10340 -1.1 -4.3 mannose-6-phosphate isomerase compare
IAI47_16420 -1.1 -7.3 LacI family DNA-binding transcriptional regulator compare
IAI47_21830 -1.1 -2.0 hypothetical protein compare
IAI47_10840 -1.1 -3.2 pyruvate kinase PykF compare
IAI47_14660 -1.1 -5.6 trigger factor compare
IAI47_08430 -1.1 -3.0 dihydroneopterin triphosphate diphosphatase compare
IAI47_15725 -1.1 -4.7 DeoR/GlpR transcriptional regulator compare
IAI47_13570 -1.1 -2.9 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_12305 -1.1 -5.1 hypothetical protein compare
IAI47_12150 -1.0 -7.2 flagellar hook protein FlgE compare
IAI47_08020 -1.0 -6.5 flagellar assembly protein FliH compare
IAI47_11210 -1.0 -5.5 type VI secretion system-associated protein TagF compare
IAI47_11150 -1.0 -3.8 D-threitol dehydrogenase compare
IAI47_12140 -1.0 -4.3 flagellar basal-body rod protein FlgG compare
IAI47_14595 -1.0 -5.8 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_15840 -1.0 -5.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
IAI47_15305 -1.0 -2.2 allantoin racemase compare
IAI47_15345 -1.0 -8.0 murein transglycosylase D compare
IAI47_02750 -1.0 -7.6 class 1 fructose-bisphosphatase compare
IAI47_08815 -1.0 -2.5 hypothetical protein compare
IAI47_00110 -1.0 -4.3 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_04435 -1.0 -7.2 ATP-dependent chaperone ClpB compare
IAI47_08345 -1.0 -6.5 flagellar type III secretion system protein FlhB compare


Specific Phenotypes

For 9 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms