Experiment set8S38 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_09040 -6.1 -3.2 NAD-dependent epimerase compare
IAI47_08085 -4.5 -5.3 helix-turn-helix domain-containing protein compare
IAI47_09580 -4.3 -4.1 FNR family transcription factor compare
IAI47_13695 -3.9 -1.2 colicin uptake protein TolR compare
IAI47_15485 -3.9 -2.0 molecular chaperone Skp compare
IAI47_10320 -3.3 -1.4 Rrf2 family transcriptional regulator compare
IAI47_16085 -3.0 -2.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15970 -3.0 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_17215 -2.9 -1.2 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_18830 -2.9 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_11450 -2.7 -7.5 ankyrin repeat domain-containing protein compare
IAI47_13950 -2.7 -1.6 PhoH family protein compare
IAI47_11310 -2.7 -4.4 redox-regulated ATPase YchF compare
IAI47_19035 -2.7 -2.4 transcriptional regulator compare
IAI47_11475 -2.6 -1.1 hypothetical protein compare
IAI47_05420 -2.4 -1.6 PTS glucose transporter subunit IIA compare
IAI47_13700 -2.4 -4.6 Tol-Pal system protein TolQ compare
IAI47_04400 -2.4 -5.4 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_09245 -2.3 -3.6 YmiA family putative membrane protein compare
IAI47_00300 -2.3 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_03375 -2.2 -9.1 peptide chain release factor 3 compare
IAI47_17035 -2.2 -3.4 ribosome maturation factor RimP compare
IAI47_10840 -2.2 -4.4 pyruvate kinase PykF compare
IAI47_06395 -2.2 -1.8 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00655 -2.2 -4.6 glycosyltransferase family 4 protein compare
IAI47_06320 -2.2 -7.6 phosphate acetyltransferase compare
IAI47_04300 -2.2 -6.3 recombinase RecA compare
IAI47_19945 -2.1 -0.9 hypothetical protein compare
IAI47_00780 -2.1 -3.7 6-phosphofructokinase compare
IAI47_03820 -2.1 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_12645 -2.0 -3.7 porin OmpA compare
IAI47_17020 -1.9 -3.3 30S ribosome-binding factor RbfA compare
IAI47_13480 -1.9 -3.0 molybdopterin synthase sulfur carrier subunit compare
IAI47_07905 -1.9 -0.8 Arc family DNA-binding protein compare
IAI47_02090 -1.9 -3.4 elongation factor Tu compare
IAI47_15110 -1.9 -4.9 chromophore lyase compare
IAI47_21655 -1.9 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_13685 -1.9 -3.6 Tol-Pal system protein TolB compare
IAI47_00735 -1.9 -2.0 protein-export chaperone SecB compare
IAI47_14075 -1.8 -2.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00870 -1.8 -0.7 50S ribosomal protein L31 compare
IAI47_14775 -1.8 -4.0 transcriptional regulator NrdR compare
IAI47_09360 -1.8 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_12880 -1.8 -12.2 formate C-acetyltransferase compare
IAI47_06325 -1.7 -5.8 acetate kinase compare
IAI47_18400 -1.7 -2.3 tyrosine recombinase XerC compare
IAI47_17005 -1.7 -7.4 polyribonucleotide nucleotidyltransferase compare
IAI47_04835 -1.7 -7.1 ATP-dependent RNA helicase SrmB compare
IAI47_07010 -1.7 -2.1 ABC transporter permease compare
IAI47_03240 -1.7 -4.3 TonB system transport protein ExbD compare
IAI47_16995 -1.7 -1.3 protein YrbN compare
IAI47_13155 -1.7 -1.9 H-NS histone family protein compare
IAI47_09210 -1.6 -6.1 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_13050 -1.6 -4.3 YbjN domain-containing protein compare
IAI47_07030 -1.6 -7.0 HAD family hydrolase compare
IAI47_11420 -1.6 -2.3 hypothetical protein compare
IAI47_09055 -1.6 -8.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_01365 -1.6 -1.5 inorganic phosphate transporter PitA compare
IAI47_13885 -1.6 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_06450 -1.6 -4.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_15605 -1.6 -1.3 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_10775 -1.6 -3.9 ribonuclease T compare
IAI47_17560 -1.5 -1.0 ROK family transcriptional regulator compare
IAI47_15600 -1.5 -2.4 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_17120 -1.5 -2.2 BolA family iron metabolism protein IbaG compare
IAI47_15025 -1.5 -1.6 transcriptional regulator LldR compare
IAI47_16405 -1.4 -2.9 siderophore-iron reductase FhuF compare
IAI47_13925 -1.4 -1.3 tRNA-Met compare
IAI47_00460 -1.4 -1.5 glutamate--ammonia ligase compare
IAI47_03235 -1.4 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_09235 -1.4 -1.3 type I DNA topoisomerase compare
IAI47_06420 -1.4 -3.1 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_07380 -1.4 -4.3 ABC transporter ATP-binding protein compare
IAI47_08670 -1.3 -2.6 DUF1272 domain-containing protein compare
IAI47_08445 -1.3 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_16990 -1.3 -2.7 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_18415 -1.3 -1.2 lipoprotein compare
IAI47_05195 -1.3 -2.1 DnaA inactivator Hda compare
IAI47_17965 -1.3 -7.9 glucose-6-phosphate isomerase compare
IAI47_13850 -1.3 -2.9 LexA regulated protein compare
IAI47_07930 -1.3 -1.3 DUF2158 domain-containing protein compare
IAI47_21765 -1.3 -1.6 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_04425 -1.3 -6.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_06655 -1.3 -3.2 1-phosphofructokinase compare
IAI47_15810 -1.3 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_18145 -1.3 -1.6 elongation factor Tu compare
IAI47_09240 -1.3 -2.4 HTH-type transcriptional regulator CysB compare
IAI47_13740 -1.3 -1.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_07350 -1.2 -0.6 hypothetical protein compare
IAI47_13310 -1.2 -3.7 MerR family transcriptional regulator compare
IAI47_06980 -1.2 -2.8 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_11550 -1.2 -2.5 hypothetical protein compare
IAI47_14805 -1.2 -4.9 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_17185 -1.2 -3.7 RNA polymerase factor sigma-54 compare
IAI47_05150 -1.2 -5.8 exopolyphosphatase compare
IAI47_14490 -1.1 -3.0 primosomal replication protein compare
IAI47_06360 -1.1 -1.4 NADH-quinone oxidoreductase subunit A compare
IAI47_13840 -1.1 -2.1 replication initiation negative regulator SeqA compare
IAI47_15980 -1.1 -5.6 catabolite repressor/activator compare
IAI47_12885 -1.1 -3.7 pyruvate formate lyase 1-activating protein compare
IAI47_07475 -1.1 -0.6 hypothetical protein compare
IAI47_08450 -1.1 -2.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05070 -1.1 -0.6 outer membrane protein assembly factor BamB compare
IAI47_19850 -1.1 -3.3 hypothetical protein compare
IAI47_01750 -1.1 -3.9 glycerol-3-phosphate dehydrogenase compare
IAI47_00465 -1.1 -1.2 ribosome-dependent GTPase TypA compare
IAI47_11760 -1.0 -0.8 TonB-dependent siderophore receptor compare
IAI47_13745 -1.0 -2.1 2-oxoglutarate dehydrogenase E1 component compare
IAI47_11610 -1.0 -3.8 serine/threonine-protein phosphatase compare
IAI47_08365 -1.0 -4.2 LysR family transcriptional regulator compare
IAI47_05435 -1.0 -2.7 hypothetical protein compare
IAI47_06400 -1.0 -1.5 NADH-quinone oxidoreductase subunit J compare
IAI47_18410 -1.0 -2.5 diaminopimelate epimerase compare
IAI47_14325 -1.0 -1.2 ribosome-associated protein YbcJ compare
IAI47_12920 -1.0 -2.2 thioredoxin-disulfide reductase compare
IAI47_15995 -1.0 -1.4 leu operon leader peptide compare
IAI47_15105 -1.0 -2.5 hypothetical protein compare
IAI47_16520 -1.0 -4.4 hypothetical protein compare
IAI47_04870 -1.0 -3.1 elongation factor 4 compare
IAI47_15880 -1.0 -1.6 DNA gyrase inhibitor YacG compare
IAI47_11220 -1.0 -4.6 serine/threonine-protein phosphatase compare
IAI47_18480 -1.0 -6.3 lipid III flippase WzxE compare
IAI47_08590 -1.0 -2.5 hypothetical protein compare
IAI47_11540 -1.0 -2.3 type VI secretion system tip protein VgrG compare
IAI47_09265 -1.0 -1.8 LapA family protein compare
IAI47_16600 -1.0 -1.0 tRNA-OTHER compare
IAI47_18520 -1.0 -6.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_06245 -1.0 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_14470 -0.9 -1.6 YbaB/EbfC family nucleoid-associated protein compare
IAI47_08850 -0.9 -3.1 septum site-determining protein MinD compare
IAI47_12790 -0.9 -0.4 chromosome partition protein MukE compare
IAI47_07895 -0.9 -4.9 hypothetical protein compare
IAI47_18735 -0.9 -3.1 DeoR/GlpR transcriptional regulator compare
IAI47_13545 -0.9 -4.4 6-phosphogluconolactonase compare
IAI47_02585 -0.9 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_03615 -0.9 -4.3 glutathione synthase compare
IAI47_12865 -0.9 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_20850 -0.9 -3.0 TetR/AcrR family transcriptional regulator compare
IAI47_04950 -0.9 -4.5 nitrogen regulatory protein P-II compare
IAI47_03135 -0.9 -4.0 outer membrane channel protein TolC compare
IAI47_07890 -0.9 -2.1 DgsA anti-repressor MtfA compare
IAI47_10340 -0.9 -2.8 mannose-6-phosphate isomerase compare
IAI47_00675 -0.9 -6.6 glycosyltransferase family 9 protein compare
IAI47_21450 -0.9 -0.7 general stress protein compare
IAI47_02380 -0.9 -1.2 DNA-binding transcriptional regulator Fis compare
IAI47_07280 -0.9 -3.0 RluA family pseudouridine synthase compare
IAI47_06365 -0.9 -1.7 NADH-quinone oxidoreductase subunit B compare
IAI47_07360 -0.9 -1.4 hypothetical protein compare
IAI47_04805 -0.9 -3.5 outer membrane protein assembly factor BamE compare
IAI47_14700 -0.8 -3.9 protoheme IX farnesyltransferase compare
IAI47_16610 -0.8 -2.1 hypothetical protein compare
IAI47_08755 -0.8 -2.5 DUF986 domain-containing protein compare
IAI47_00430 -0.8 -5.2 DNA polymerase I compare
IAI47_06010 -0.8 -3.1 hypothetical protein compare
IAI47_02350 -0.8 -0.5 tRNA-Thr compare
IAI47_08440 -0.8 -1.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_10555 -0.8 -1.9 hypothetical protein compare
IAI47_07000 -0.8 -4.8 UDP-glucose 4-epimerase GalE compare
IAI47_10795 -0.8 -3.3 HTH-type transcriptional repressor PurR compare
IAI47_08045 -0.8 -1.6 NUDIX domain-containing protein compare
IAI47_06475 -0.8 -3.1 transcriptional regulator RcsB compare
IAI47_15155 -0.8 -2.1 DUF943 family protein compare
IAI47_03680 -0.8 -4.2 transketolase compare
IAI47_05465 -0.8 -2.7 bile acid:sodium symporter compare
IAI47_01835 -0.8 -3.8 Hsp33 family molecular chaperone HslO compare
IAI47_20065 -0.8 -2.2 YebG family protein compare
IAI47_13195 -0.8 -3.9 DNA starvation/stationary phase protection protein Dps compare
IAI47_01825 -0.8 -3.6 two-component system sensor histidine kinase EnvZ compare
IAI47_18705 -0.8 -4.6 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_09275 -0.8 -3.2 orotidine-5'-phosphate decarboxylase compare
IAI47_09855 -0.8 -2.4 DUF2384 domain-containing protein compare
IAI47_14695 -0.8 -2.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_21180 -0.8 -2.1 IS6 family transposase compare
IAI47_00670 -0.8 -6.3 sugar glycosyltransferase compare
IAI47_02515 -0.8 -2.5 transcriptional regulator ArgR compare
IAI47_19940 -0.8 -1.5 hypothetical protein compare
IAI47_08040 -0.8 -1.3 hypothetical protein compare
IAI47_11675 -0.8 -3.6 type VI secretion system-associated protein TagF compare
IAI47_07300 -0.8 -2.5 hypothetical protein compare
IAI47_18580 -0.7 -4.7 insulinase family protein compare
IAI47_13495 -0.7 -2.5 GTP 3',8-cyclase MoaA compare
IAI47_18420 -0.7 -4.7 class I adenylate cyclase compare
IAI47_00930 -0.7 -3.3 DNA-binding transcriptional regulator OxyR compare
IAI47_18055 -0.7 -2.7 DNA-binding protein HU-alpha compare
IAI47_01820 -0.7 -1.7 two-component system response regulator OmpR compare
IAI47_19315 -0.7 -2.1 type II toxin-antitoxin system Phd/YefM family antitoxin compare
IAI47_17235 -0.7 -4.9 stringent starvation protein A compare
IAI47_05035 -0.7 -1.5 nucleoside-diphosphate kinase compare
IAI47_11415 -0.7 -0.7 hypothetical protein compare
IAI47_03685 -0.7 -3.7 erythrose-4-phosphate dehydrogenase compare
IAI47_15095 -0.7 -2.4 hypothetical protein compare
IAI47_08845 -0.7 -0.6 cell division topological specificity factor MinE compare
IAI47_05000 -0.7 -3.0 Fe-S cluster assembly transcriptional regulator IscR compare
IAI47_15235 -0.7 -1.4 hydroxyisourate hydrolase compare
IAI47_09395 -0.7 -1.1 phage shock protein PspA compare
IAI47_13690 -0.7 -0.4 cell envelope integrity protein TolA compare
IAI47_03640 -0.7 -4.8 glycosyltransferase compare
IAI47_04775 -0.7 -0.9 SIR2 family protein compare
IAI47_18470 -0.7 -5.3 ECA oligosaccharide polymerase compare
IAI47_11880 -0.7 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms