Experiment set8S3 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -6.2 -4.3 RNA polymerase-binding protein DksA compare
IAI47_13685 -5.9 -4.9 Tol-Pal system protein TolB compare
IAI47_08705 -5.7 -11.5 carboxy terminal-processing peptidase compare
IAI47_18480 -5.6 -16.9 lipid III flippase WzxE compare
IAI47_09040 -5.1 -3.0 NAD-dependent epimerase compare
IAI47_18520 -5.1 -25.5 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12275 -4.9 -21.8 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_08700 -4.8 -8.7 RNA chaperone ProQ compare
IAI47_17000 -4.7 -15.4 lipoprotein NlpI compare
IAI47_00655 -4.6 -7.4 glycosyltransferase family 4 protein compare
IAI47_12280 -4.6 -14.9 glucan biosynthesis protein G compare
IAI47_07010 -4.4 -4.3 ABC transporter permease compare
IAI47_09235 -4.4 -3.0 type I DNA topoisomerase compare
IAI47_13885 -4.3 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_07015 -4.2 -8.6 ABC transporter ATP-binding protein compare
IAI47_13700 -4.2 -5.7 Tol-Pal system protein TolQ compare
IAI47_12925 -4.1 -4.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13415 -4.1 -18.5 L,D-transpeptidase family protein compare
IAI47_18470 -4.1 -19.2 ECA oligosaccharide polymerase compare
IAI47_12645 -4.0 -6.7 porin OmpA compare
IAI47_13695 -4.0 -1.3 colicin uptake protein TolR compare
IAI47_09580 -4.0 -5.4 FNR family transcription factor compare
IAI47_13720 -3.8 -6.4 cytochrome d ubiquinol oxidase subunit II compare
IAI47_10845 -3.8 -5.2 major outer membrane lipoprotein compare
IAI47_07005 -3.7 -7.3 glycosyltransferase family 4 protein compare
IAI47_05070 -3.7 -1.3 outer membrane protein assembly factor BamB compare
IAI47_13725 -3.7 -8.5 cytochrome ubiquinol oxidase subunit I compare
IAI47_17235 -3.7 -15.4 stringent starvation protein A compare
IAI47_12930 -3.7 -5.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05155 -3.6 -21.6 polyphosphate kinase 1 compare
IAI47_11930 -3.6 -7.9 two-component system response regulator PhoP compare
IAI47_18055 -3.6 -6.7 DNA-binding protein HU-alpha compare
IAI47_05195 -3.5 -3.4 DnaA inactivator Hda compare
IAI47_13690 -3.5 -1.2 cell envelope integrity protein TolA compare
IAI47_10320 -3.5 -1.7 Rrf2 family transcriptional regulator compare
IAI47_07475 -3.5 -1.7 hypothetical protein compare
IAI47_21880 -3.3 -1.1 ParA family protein compare
IAI47_08845 -3.3 -2.8 cell division topological specificity factor MinE compare
IAI47_21600 -3.2 -3.2 EamA family transporter compare
IAI47_08085 -3.2 -7.1 helix-turn-helix domain-containing protein compare
IAI47_14700 -3.2 -7.6 protoheme IX farnesyltransferase compare
IAI47_03640 -3.1 -17.3 glycosyltransferase compare
IAI47_00930 -3.1 -12.8 DNA-binding transcriptional regulator OxyR compare
IAI47_08440 -3.0 -2.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_17580 -3.0 -11.9 hypothetical protein compare
IAI47_00675 -3.0 -17.8 glycosyltransferase family 9 protein compare
IAI47_06325 -2.9 -7.6 acetate kinase compare
IAI47_04300 -2.9 -6.5 recombinase RecA compare
IAI47_18830 -2.9 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_15485 -2.9 -1.6 molecular chaperone Skp compare
IAI47_09305 -2.9 -2.8 cyclic di-GMP phosphodiesterase compare
IAI47_07350 -2.8 -1.4 hypothetical protein compare
IAI47_21595 -2.8 -9.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_18400 -2.8 -3.8 tyrosine recombinase XerC compare
IAI47_06320 -2.7 -8.4 phosphate acetyltransferase compare
IAI47_07025 -2.7 -6.4 glycosyltransferase family 4 protein compare
IAI47_00940 -2.7 -9.7 HTH-type transcriptional repressor FabR compare
IAI47_00430 -2.7 -15.9 DNA polymerase I compare
IAI47_07030 -2.7 -7.9 HAD family hydrolase compare
IAI47_03645 -2.6 -14.8 O-antigen ligase family protein compare
IAI47_17965 -2.6 -14.8 glucose-6-phosphate isomerase compare
IAI47_14680 -2.6 -6.8 cytochrome o ubiquinol oxidase subunit II compare
IAI47_07000 -2.6 -10.0 UDP-glucose 4-epimerase GalE compare
IAI47_04865 -2.6 -3.2 SoxR-reducing system protein RseC compare
IAI47_05425 -2.6 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_05520 -2.5 -1.7 tRNA-Ala compare
IAI47_01750 -2.4 -8.2 glycerol-3-phosphate dehydrogenase compare
IAI47_17155 -2.4 -12.1 calcium/sodium antiporter compare
IAI47_13405 -2.4 -7.9 DedA family protein compare
IAI47_00780 -2.4 -3.7 6-phosphofructokinase compare
IAI47_06455 -2.4 -6.9 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_00670 -2.4 -14.8 sugar glycosyltransferase compare
IAI47_14695 -2.4 -5.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_08285 -2.4 -9.9 flagellar transcriptional regulator FlhC compare
IAI47_09055 -2.4 -12.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_04505 -2.4 -8.5 transcriptional repressor MprA compare
IAI47_03240 -2.3 -5.6 TonB system transport protein ExbD compare
IAI47_03375 -2.3 -10.0 peptide chain release factor 3 compare
IAI47_07985 -2.3 -6.6 flagellar biosynthetic protein FliO compare
IAI47_12885 -2.3 -8.6 pyruvate formate lyase 1-activating protein compare
IAI47_14075 -2.3 -2.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_04895 -2.3 -4.0 pyridoxine 5'-phosphate synthase compare
IAI47_02345 -2.3 -1.7 5S ribosomal RNA compare
IAI47_09245 -2.2 -5.1 YmiA family putative membrane protein compare
IAI47_13890 -2.2 -9.0 ROK family transcriptional regulator compare
IAI47_09100 -2.2 -11.4 cardiolipin synthase compare
IAI47_06450 -2.2 -5.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_00755 -2.2 -8.8 envelope stress sensor histidine kinase CpxA compare
IAI47_12880 -2.2 -14.5 formate C-acetyltransferase compare
IAI47_05090 -2.2 -2.6 hypothetical protein compare
IAI47_02380 -2.2 -2.9 DNA-binding transcriptional regulator Fis compare
IAI47_13050 -2.2 -4.0 YbjN domain-containing protein compare
IAI47_07020 -2.1 -1.8 hypothetical protein compare
IAI47_15595 -2.1 -2.3 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_03820 -2.1 -4.2 site-specific tyrosine recombinase XerD compare
IAI47_07970 -2.0 -8.3 flagellar type III secretion system protein FliR compare
IAI47_15980 -2.0 -9.7 catabolite repressor/activator compare
IAI47_05035 -1.9 -2.9 nucleoside-diphosphate kinase compare
IAI47_01355 -1.9 -5.6 universal stress protein UspA compare
IAI47_17005 -1.9 -6.6 polyribonucleotide nucleotidyltransferase compare
IAI47_12865 -1.9 -9.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_21610 -1.9 -8.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_07180 -1.9 -7.2 DUF496 family protein compare
IAI47_12565 -1.8 -10.7 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_01180 -1.8 -1.4 prolyl oligopeptidase family serine peptidase compare
IAI47_00445 -1.8 -8.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_15110 -1.8 -5.1 chromophore lyase compare
IAI47_12130 -1.8 -10.3 flagellar basal body P-ring protein FlgI compare
IAI47_11935 -1.8 -11.1 two-component system sensor histidine kinase PhoQ compare
IAI47_13745 -1.8 -4.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_08025 -1.7 -6.1 flagellar motor switch protein FliG compare
IAI47_08445 -1.7 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_10840 -1.7 -4.4 pyruvate kinase PykF compare
IAI47_14685 -1.7 -7.6 cytochrome o ubiquinol oxidase subunit I compare
IAI47_07980 -1.7 -6.9 flagellar type III secretion system pore protein FliP compare
IAI47_14595 -1.6 -8.9 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_04800 -1.6 -1.1 RnfH family protein compare
IAI47_10520 -1.6 -3.1 pyridoxamine 5'-phosphate oxidase compare
IAI47_10925 -1.6 -3.9 EAL domain-containing protein compare
IAI47_21605 -1.6 -9.4 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_11220 -1.5 -4.8 serine/threonine-protein phosphatase compare
IAI47_19945 -1.5 -0.9 hypothetical protein compare
IAI47_06235 -1.5 -6.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07990 -1.5 -3.6 flagellar motor switch protein FliN compare
IAI47_12470 -1.5 -9.3 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_08350 -1.5 -6.8 flagellar biosynthesis protein FlhA compare
IAI47_13765 -1.5 -2.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_12155 -1.5 -7.5 flagellar hook assembly protein FlgD compare
IAI47_18490 -1.5 -3.4 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_16520 -1.5 -7.5 hypothetical protein compare
IAI47_08280 -1.5 -6.0 flagellar transcriptional regulator FlhD compare
IAI47_00885 -1.5 -10.4 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_14690 -1.5 -4.5 cytochrome o ubiquinol oxidase subunit III compare
IAI47_12135 -1.5 -9.3 flagellar basal body L-ring protein FlgH compare
IAI47_08450 -1.5 -3.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_19690 -1.4 -1.1 hypothetical protein compare
IAI47_08020 -1.4 -4.5 flagellar assembly protein FliH compare
IAI47_14640 -1.4 -4.1 DNA-binding protein HU-beta compare
IAI47_15605 -1.4 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_05535 -1.4 -6.2 Nramp family divalent metal transporter compare
IAI47_08010 -1.4 -5.5 flagella biosynthesis chaperone FliJ compare
IAI47_11830 -1.4 -4.8 muramoyltetrapeptide carboxypeptidase compare
IAI47_13850 -1.4 -4.2 LexA regulated protein compare
IAI47_00110 -1.4 -5.9 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_09750 -1.4 -6.6 ROK family transcriptional regulator compare
IAI47_02350 -1.4 -1.1 tRNA-Thr compare
IAI47_18420 -1.4 -7.7 class I adenylate cyclase compare
IAI47_16190 -1.3 -4.4 molybdopterin adenylyltransferase compare
IAI47_08345 -1.3 -8.9 flagellar type III secretion system protein FlhB compare
IAI47_02040 -1.3 -5.3 peptidylprolyl isomerase compare
IAI47_04855 -1.3 -2.8 anti-sigma-E factor RseA compare
IAI47_20705 -1.3 -1.1 sulfur carrier protein ThiS compare
IAI47_05745 -1.3 -1.6 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_02750 -1.3 -9.5 class 1 fructose-bisphosphatase compare
IAI47_09320 -1.3 -7.1 exoribonuclease II compare
IAI47_12160 -1.3 -5.5 flagellar basal body rod protein FlgC compare
IAI47_11210 -1.3 -6.8 type VI secretion system-associated protein TagF compare
IAI47_12170 -1.3 -5.9 flagellar basal body P-ring formation protein FlgA compare
IAI47_07975 -1.3 -5.0 flagellar biosynthesis protein FliQ compare
IAI47_07995 -1.3 -6.1 flagellar motor switch protein FliM compare
IAI47_12140 -1.3 -6.4 flagellar basal-body rod protein FlgG compare
IAI47_11685 -1.3 -6.6 DotU family type VI secretion system protein compare
IAI47_03680 -1.3 -7.7 transketolase compare
IAI47_08030 -1.3 -7.3 flagellar M-ring protein FliF compare
IAI47_18485 -1.2 -7.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_15345 -1.2 -9.5 murein transglycosylase D compare
IAI47_16055 -1.2 -8.3 RNA polymerase-associated protein RapA compare
IAI47_08015 -1.2 -5.6 flagellum-specific ATP synthase FliI compare
IAI47_14660 -1.2 -5.8 trigger factor compare
IAI47_00775 -1.2 -6.9 CDF family cation-efflux transporter FieF compare
IAI47_00500 -1.2 -7.3 ATP-dependent DNA helicase RecG compare
IAI47_18705 -1.2 -7.6 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08850 -1.2 -3.9 septum site-determining protein MinD compare
IAI47_05050 -1.2 -2.8 cytoskeleton protein RodZ compare
IAI47_12570 -1.2 -0.9 tRNA-Ser compare
IAI47_03195 -1.2 -2.5 cell division protein FtsP compare
IAI47_12165 -1.2 -4.2 flagellar basal body rod protein FlgB compare
IAI47_03235 -1.1 -3.3 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_00465 -1.1 -1.5 ribosome-dependent GTPase TypA compare
IAI47_13390 -1.1 -6.4 mechanosensitive ion channel family protein compare
IAI47_12105 -1.1 -5.3 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_00870 -1.1 -0.8 50S ribosomal protein L31 compare
IAI47_08710 -1.1 -5.2 protease HtpX compare
IAI47_16995 -1.1 -1.3 protein YrbN compare
IAI47_12145 -1.1 -4.3 flagellar basal body rod protein FlgF compare
IAI47_09420 -1.1 -5.4 TIGR01620 family protein compare
IAI47_04435 -1.1 -7.7 ATP-dependent chaperone ClpB compare
IAI47_11760 -1.1 -0.9 TonB-dependent siderophore receptor compare
IAI47_15725 -1.1 -3.8 DeoR/GlpR transcriptional regulator compare
IAI47_14590 -1.1 -7.9 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_06565 -1.1 -1.3 YejL family protein compare
IAI47_13950 -1.1 -1.2 PhoH family protein compare
IAI47_05325 -1.1 -2.0 DUF1471 domain-containing protein compare
IAI47_11610 -1.1 -4.0 serine/threonine-protein phosphatase compare
IAI47_13370 -1.1 -8.4 beta-glucosidase BglX compare
IAI47_09435 -1.0 -5.0 GtrA family protein compare
IAI47_17120 -1.0 -1.9 BolA family iron metabolism protein IbaG compare
IAI47_12125 -1.0 -5.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_12150 -1.0 -6.4 flagellar hook protein FlgE compare
IAI47_13475 -1.0 -2.1 molybdopterin synthase catalytic subunit MoaE compare


Specific Phenotypes

For 8 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms