Experiment set8S25 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -6.2 -4.3 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.9 -5.8 carboxy terminal-processing peptidase compare
IAI47_13685 -5.9 -5.2 Tol-Pal system protein TolB compare
IAI47_00655 -5.7 -7.7 glycosyltransferase family 4 protein compare
IAI47_09580 -5.4 -3.7 FNR family transcription factor compare
IAI47_08700 -5.2 -7.9 RNA chaperone ProQ compare
IAI47_09040 -5.1 -3.3 NAD-dependent epimerase compare
IAI47_17000 -4.8 -14.5 lipoprotein NlpI compare
IAI47_10845 -4.6 -4.5 major outer membrane lipoprotein compare
IAI47_05090 -4.3 -5.1 hypothetical protein compare
IAI47_08085 -4.3 -5.8 helix-turn-helix domain-containing protein compare
IAI47_08440 -4.1 -2.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_13695 -4.0 -1.5 colicin uptake protein TolR compare
IAI47_05070 -3.8 -1.4 outer membrane protein assembly factor BamB compare
IAI47_12275 -3.6 -22.9 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_13690 -3.5 -1.3 cell envelope integrity protein TolA compare
IAI47_13700 -3.4 -6.4 Tol-Pal system protein TolQ compare
IAI47_07020 -3.3 -2.3 hypothetical protein compare
IAI47_12280 -3.3 -16.6 glucan biosynthesis protein G compare
IAI47_17965 -3.3 -16.4 glucose-6-phosphate isomerase compare
IAI47_09055 -3.3 -14.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_12885 -3.3 -10.7 pyruvate formate lyase 1-activating protein compare
IAI47_13725 -3.2 -8.1 cytochrome ubiquinol oxidase subunit I compare
IAI47_18400 -3.1 -3.6 tyrosine recombinase XerC compare
IAI47_12880 -3.1 -19.8 formate C-acetyltransferase compare
IAI47_12930 -3.1 -5.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_00300 -3.0 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_12645 -3.0 -5.9 porin OmpA compare
IAI47_07015 -3.0 -8.3 ABC transporter ATP-binding protein compare
IAI47_18480 -3.0 -9.6 lipid III flippase WzxE compare
IAI47_13950 -3.0 -2.3 PhoH family protein compare
IAI47_18830 -2.9 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_06320 -2.9 -8.7 phosphate acetyltransferase compare
IAI47_00780 -2.9 -2.8 6-phosphofructokinase compare
IAI47_18055 -2.7 -6.8 DNA-binding protein HU-alpha compare
IAI47_06965 -2.7 -2.3 glycosyltransferase family 2 protein compare
IAI47_18470 -2.7 -13.4 ECA oligosaccharide polymerase compare
IAI47_12925 -2.7 -4.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09235 -2.7 -2.4 type I DNA topoisomerase compare
IAI47_13720 -2.5 -5.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_15600 -2.5 -3.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_11515 -2.5 -2.6 hypothetical protein compare
IAI47_17235 -2.5 -13.0 stringent starvation protein A compare
IAI47_03235 -2.4 -6.9 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_09360 -2.4 -1.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_10840 -2.4 -4.2 pyruvate kinase PykF compare
IAI47_17005 -2.4 -6.2 polyribonucleotide nucleotidyltransferase compare
IAI47_06325 -2.3 -7.1 acetate kinase compare
IAI47_12790 -2.3 -1.2 chromosome partition protein MukE compare
IAI47_03135 -2.3 -7.8 outer membrane channel protein TolC compare
IAI47_04300 -2.2 -7.1 recombinase RecA compare
IAI47_17560 -2.2 -1.6 ROK family transcriptional regulator compare
IAI47_08450 -2.2 -4.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_18520 -2.1 -15.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_17155 -2.1 -11.4 calcium/sodium antiporter compare
IAI47_00940 -2.1 -9.7 HTH-type transcriptional repressor FabR compare
IAI47_05155 -2.1 -14.2 polyphosphate kinase 1 compare
IAI47_03240 -2.1 -5.1 TonB system transport protein ExbD compare
IAI47_07165 -2.1 -2.7 exodeoxyribonuclease I compare
IAI47_06245 -2.0 -4.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_11450 -2.0 -6.7 ankyrin repeat domain-containing protein compare
IAI47_07030 -2.0 -10.1 HAD family hydrolase compare
IAI47_17120 -2.0 -3.8 BolA family iron metabolism protein IbaG compare
IAI47_07005 -1.9 -5.2 glycosyltransferase family 4 protein compare
IAI47_06450 -1.9 -4.8 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07025 -1.9 -6.8 glycosyltransferase family 4 protein compare
IAI47_17215 -1.9 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13415 -1.8 -9.4 L,D-transpeptidase family protein compare
IAI47_01750 -1.8 -6.3 glycerol-3-phosphate dehydrogenase compare
IAI47_00870 -1.8 -1.3 50S ribosomal protein L31 compare
IAI47_04505 -1.8 -7.9 transcriptional repressor MprA compare
IAI47_21600 -1.8 -3.2 EamA family transporter compare
IAI47_03375 -1.7 -8.4 peptide chain release factor 3 compare
IAI47_13050 -1.7 -3.5 YbjN domain-containing protein compare
IAI47_14470 -1.7 -3.0 YbaB/EbfC family nucleoid-associated protein compare
IAI47_16520 -1.7 -8.6 hypothetical protein compare
IAI47_08445 -1.7 -1.2 Holliday junction branch migration protein RuvA compare
IAI47_17185 -1.6 -6.4 RNA polymerase factor sigma-54 compare
IAI47_17580 -1.6 -7.3 hypothetical protein compare
IAI47_05035 -1.6 -2.6 nucleoside-diphosphate kinase compare
IAI47_05195 -1.6 -2.3 DnaA inactivator Hda compare
IAI47_15485 -1.6 -1.2 molecular chaperone Skp compare
IAI47_05425 -1.6 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_07010 -1.6 -2.2 ABC transporter permease compare
IAI47_21655 -1.5 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_06915 -1.5 -8.6 outer membrane assembly protein AsmA compare
IAI47_05050 -1.5 -5.7 cytoskeleton protein RodZ compare
IAI47_21595 -1.5 -6.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_04425 -1.5 -7.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_10320 -1.5 -0.9 Rrf2 family transcriptional regulator compare
IAI47_09245 -1.5 -2.7 YmiA family putative membrane protein compare
IAI47_16405 -1.4 -3.1 siderophore-iron reductase FhuF compare
IAI47_06455 -1.4 -5.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_09855 -1.4 -3.6 DUF2384 domain-containing protein compare
IAI47_01180 -1.4 -1.2 prolyl oligopeptidase family serine peptidase compare
IAI47_08355 -1.4 -2.7 flagellar protein FlhE compare
IAI47_10470 -1.4 -2.4 electron transport complex subunit E compare
IAI47_06565 -1.4 -1.5 YejL family protein compare
IAI47_00760 -1.4 -3.3 envelope stress response regulator transcription factor CpxR compare
IAI47_04805 -1.4 -4.2 outer membrane protein assembly factor BamE compare
IAI47_11310 -1.4 -2.9 redox-regulated ATPase YchF compare
IAI47_18420 -1.3 -8.4 class I adenylate cyclase compare
IAI47_04750 -1.3 -2.3 hypothetical protein compare
IAI47_12875 -1.3 -5.9 formate transporter FocA compare
IAI47_04835 -1.3 -6.0 ATP-dependent RNA helicase SrmB compare
IAI47_00445 -1.3 -7.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_07885 -1.3 -1.2 tRNA-Asn compare
IAI47_03680 -1.3 -8.1 transketolase compare
IAI47_12920 -1.2 -2.6 thioredoxin-disulfide reductase compare
IAI47_03820 -1.2 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_07180 -1.2 -6.3 DUF496 family protein compare
IAI47_04870 -1.2 -4.8 elongation factor 4 compare
IAI47_11995 -1.2 -4.1 beta-N-acetylhexosaminidase compare
IAI47_00660 -1.2 -6.6 putative lipopolysaccharide heptosyltransferase III compare
IAI47_12470 -1.2 -8.3 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_02400 -1.2 -1.5 YhdT family protein compare
IAI47_03550 -1.2 -7.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_12865 -1.2 -6.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07475 -1.2 -1.1 hypothetical protein compare
IAI47_02040 -1.1 -5.2 peptidylprolyl isomerase compare
IAI47_07350 -1.1 -0.9 hypothetical protein compare
IAI47_05580 -1.1 -1.5 membrane protein YpdK compare
IAI47_00430 -1.1 -7.8 DNA polymerase I compare
IAI47_00675 -1.1 -8.5 glycosyltransferase family 9 protein compare
IAI47_08165 -1.1 -5.6 flagella biosynthesis regulatory protein FliZ compare
IAI47_01005 -1.1 -7.4 DUF413 domain-containing protein compare
IAI47_13065 -1.0 -1.5 DUF1418 family protein compare
IAI47_13890 -1.0 -4.8 ROK family transcriptional regulator compare
IAI47_11420 -1.0 -2.1 hypothetical protein compare
IAI47_17020 -1.0 -1.9 30S ribosome-binding factor RbfA compare
IAI47_03195 -1.0 -2.7 cell division protein FtsP compare
IAI47_14495 -1.0 -3.0 hypothetical protein compare
IAI47_00755 -1.0 -5.1 envelope stress sensor histidine kinase CpxA compare
IAI47_00465 -1.0 -1.8 ribosome-dependent GTPase TypA compare
IAI47_11610 -1.0 -6.0 serine/threonine-protein phosphatase compare
IAI47_15110 -1.0 -2.2 chromophore lyase compare
IAI47_15540 -1.0 -5.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_11760 -1.0 -0.8 TonB-dependent siderophore receptor compare
IAI47_11550 -1.0 -1.5 hypothetical protein compare
IAI47_18530 -1.0 -1.3 thioredoxin TrxA compare
IAI47_13310 -1.0 -3.7 MerR family transcriptional regulator compare
IAI47_18265 -1.0 -1.9 Sec-independent protein translocase subunit TatB compare
IAI47_14930 -1.0 -2.3 shikimate kinase AroL compare
IAI47_11935 -1.0 -7.3 two-component system sensor histidine kinase PhoQ compare
IAI47_16930 -1.0 -4.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_00110 -0.9 -4.5 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_14555 -0.9 -2.3 hemolysin expression modulator Hha compare
IAI47_07000 -0.9 -5.3 UDP-glucose 4-epimerase GalE compare
IAI47_19350 -0.9 -3.1 DUF305 domain-containing protein compare
IAI47_16055 -0.9 -6.7 RNA polymerase-associated protein RapA compare
IAI47_04710 -0.9 -3.2 hypothetical protein compare
IAI47_10435 -0.9 -3.8 transcription modulator YdgT compare
IAI47_18675 -0.9 -4.7 MarR family transcriptional regulator compare
IAI47_13840 -0.9 -1.9 replication initiation negative regulator SeqA compare
IAI47_20065 -0.9 -3.3 YebG family protein compare
IAI47_10545 -0.9 -2.4 hypothetical protein compare
IAI47_16925 -0.9 -6.2 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_11220 -0.9 -4.1 serine/threonine-protein phosphatase compare
IAI47_10555 -0.9 -2.0 hypothetical protein compare
IAI47_09440 -0.9 -5.4 transcriptional regulator TyrR compare
IAI47_04450 -0.9 -1.8 tRNA-Ala compare
IAI47_07550 -0.9 -0.8 tRNA-Asn compare
IAI47_14730 -0.9 -1.0 exodeoxyribonuclease VII small subunit compare
IAI47_06910 -0.9 -3.1 dCTP deaminase compare
IAI47_09240 -0.9 -1.9 HTH-type transcriptional regulator CysB compare
IAI47_14640 -0.8 -2.8 DNA-binding protein HU-beta compare
IAI47_06980 -0.8 -2.5 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_17255 -0.8 -1.2 DUF1043 family protein compare
IAI47_00500 -0.8 -5.4 ATP-dependent DNA helicase RecG compare
IAI47_07790 -0.8 -1.8 ribose 1,5-bisphosphokinase compare
IAI47_06240 -0.8 -3.6 aspartate-semialdehyde dehydrogenase compare
IAI47_14185 -0.8 -3.4 DUF1349 domain-containing protein compare
IAI47_07490 -0.8 -2.1 DNA-binding protein compare
IAI47_01475 -0.8 -3.7 MurR/RpiR family transcriptional regulator compare
IAI47_15725 -0.8 -3.1 DeoR/GlpR transcriptional regulator compare
IAI47_14075 -0.8 -1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_10340 -0.8 -3.7 mannose-6-phosphate isomerase compare
IAI47_11210 -0.8 -4.7 type VI secretion system-associated protein TagF compare
IAI47_08855 -0.8 -3.1 septum site-determining protein MinC compare
IAI47_10775 -0.8 -3.0 ribonuclease T compare
IAI47_08300 -0.8 -5.3 chemotaxis protein CheA compare
IAI47_16080 -0.8 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_20375 -0.8 -3.1 TetR family transcriptional regulator compare
IAI47_08080 -0.8 -1.7 hypothetical protein compare
IAI47_05020 -0.8 -4.5 3-mercaptopyruvate sulfurtransferase compare
IAI47_00930 -0.8 -4.6 DNA-binding transcriptional regulator OxyR compare
IAI47_12760 -0.8 -4.7 porin OmpF compare
IAI47_10455 -0.8 -2.3 electron transport complex subunit RsxC compare
IAI47_14660 -0.8 -4.3 trigger factor compare
IAI47_09305 -0.8 -1.7 cyclic di-GMP phosphodiesterase compare
IAI47_19550 -0.8 -1.0 DUF1471 domain-containing protein compare
IAI47_01780 -0.7 -1.6 Fe-S biogenesis protein NfuA compare
IAI47_19245 -0.7 -2.4 SIS domain-containing protein compare
IAI47_11685 -0.7 -3.8 DotU family type VI secretion system protein compare
IAI47_01000 -0.7 -5.3 HTH-type transcriptional regulator HdfR compare
IAI47_09320 -0.7 -4.3 exoribonuclease II compare
IAI47_06655 -0.7 -2.3 1-phosphofructokinase compare
IAI47_04110 -0.7 -6.4 two-component sensor histidine kinase BarA compare
IAI47_00720 -0.7 -4.8 murein hydrolase activator EnvC compare
IAI47_04830 -0.7 -2.2 autonomous glycyl radical cofactor GrcA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms