Experiment set8S221 for Pseudomonas aeruginosa PA14

Compare to:

0.003469910296 M Sodium chlorite

Group: stress
Media: LB + Sodium Chlorite (0.00347 M), pH=7
Culturing: Paeruginosa_PA14_ML18, 96 deep-well block, Aerobic, at 30 (C), shaken=700 rpm
By: Hans and Ryan on 6/24/25
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 45 genes in this experiment

For stress Sodium Chlorite in Pseudomonas aeruginosa PA14

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem #Specific
Aromatic amino acid degradation 4
Transport of Iron 4
Campylobacter Iron Metabolism 3
Iron acquisition in Vibrio 3
Orphan regulatory proteins 2
ABC transporter alkylphosphonate (TC 3.A.1.9.1) 1
Beta-lactamase 1
Central meta-cleavage pathway of aromatic compound degradation 1
Cobalt-zinc-cadmium resistance 1
Deoxyribose and Deoxynucleoside Catabolism 1
Fatty Acid Biosynthesis FASII 1
Flagellar motility 1
Flagellum 1
Hemin transport system 1
Homogentisate pathway of aromatic compound degradation 1
Methylcitrate cycle 1
Plastoquinone Biosynthesis 1
Polyamine Metabolism 1
Propionate-CoA to Succinate Module 1
Pterin biosynthesis 1
Pyruvate Alanine Serine Interconversions 1
Queuosine-Archaeosine Biosynthesis 1
Respiratory dehydrogenases 1 1
Terminal cytochrome C oxidases 1
Tocopherol Biosynthesis 1
YcfH 1
mycolic acid synthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-phenylalanine degradation I (aerobic) 1 1 1
L-tyrosine biosynthesis IV 1 1 1
L-alanine degradation I 2 2 1
spermidine biosynthesis I 2 2 1
arsenite to oxygen electron transfer 2 1 1
L-phenylalanine degradation V 3 3 1
CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis 3 1 1
plastoquinol-9 biosynthesis I 3 1 1
arsenite to oxygen electron transfer (via azurin) 3 1 1
gondoate biosynthesis (anaerobic) 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
aerobic respiration I (cytochrome c) 4 3 1
aerobic respiration II (cytochrome c) (yeast) 4 3 1
palmitate biosynthesis III 29 21 7
tetradecanoate biosynthesis (mitochondria) 25 17 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 9 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 51 11
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 20 4
2-methylcitrate cycle I 5 5 1
cis-vaccenate biosynthesis 5 5 1
L-tyrosine degradation I 5 5 1
fatty acid elongation -- saturated 5 5 1
8-amino-7-oxononanoate biosynthesis IV 5 4 1
superpathway of plastoquinol biosynthesis 5 2 1
superpathway of fatty acid biosynthesis II (plant) 43 38 8
8-amino-7-oxononanoate biosynthesis I 11 9 2
anteiso-branched-chain fatty acid biosynthesis 34 24 6
odd iso-branched-chain fatty acid biosynthesis 34 24 6
even iso-branched-chain fatty acid biosynthesis 34 24 6
(5Z)-dodecenoate biosynthesis I 6 6 1
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis II 6 5 1
2-methylcitrate cycle II 6 5 1
stearate biosynthesis IV 6 4 1
Fe(II) oxidation 6 3 1
petroselinate biosynthesis 6 2 1
streptorubin B biosynthesis 34 20 5
vitamin E biosynthesis (tocopherols) 7 1 1
biotin biosynthesis I 15 13 2
superpathway of fatty acid biosynthesis I (E. coli) 16 15 2
superpathway of polyamine biosynthesis I 8 7 1
superpathway of polyamine biosynthesis II 8 6 1
2-allylmalonyl-CoA biosynthesis 8 2 1
superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis 8 1 1
L-phenylalanine degradation IV (mammalian, via side chain) 9 4 1
L-methionine salvage cycle III 11 9 1
L-methionine salvage cycle I (bacteria and plants) 12 8 1
superpathway of arginine and polyamine biosynthesis 17 16 1
mycolate biosynthesis 205 20 5
superpathway of mycolate biosynthesis 239 21 5