Experiment set8S22 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.2 -3.6 Tol-Pal system protein TolB compare
IAI47_00655 -6.8 -6.0 glycosyltransferase family 4 protein compare
IAI47_08705 -5.6 -11.4 carboxy terminal-processing peptidase compare
IAI47_06565 -5.3 -2.3 YejL family protein compare
IAI47_09040 -5.0 -2.1 NAD-dependent epimerase compare
IAI47_17000 -4.7 -14.2 lipoprotein NlpI compare
IAI47_08085 -4.7 -4.5 helix-turn-helix domain-containing protein compare
IAI47_10845 -4.6 -4.5 major outer membrane lipoprotein compare
IAI47_18480 -4.5 -15.9 lipid III flippase WzxE compare
IAI47_13700 -4.3 -5.1 Tol-Pal system protein TolQ compare
IAI47_12645 -4.3 -5.8 porin OmpA compare
IAI47_11830 -4.2 -11.9 muramoyltetrapeptide carboxypeptidase compare
IAI47_19945 -4.2 -1.0 hypothetical protein compare
IAI47_09235 -4.2 -2.1 type I DNA topoisomerase compare
IAI47_09580 -4.1 -4.9 FNR family transcription factor compare
IAI47_13695 -4.0 -1.0 colicin uptake protein TolR compare
IAI47_02345 -3.9 -1.4 5S ribosomal RNA compare
IAI47_17965 -3.9 -17.3 glucose-6-phosphate isomerase compare
IAI47_12280 -3.9 -16.7 glucan biosynthesis protein G compare
IAI47_05070 -3.8 -0.9 outer membrane protein assembly factor BamB compare
IAI47_13950 -3.7 -1.9 PhoH family protein compare
IAI47_08700 -3.7 -9.3 RNA chaperone ProQ compare
IAI47_12275 -3.7 -21.6 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_12880 -3.7 -21.2 formate C-acetyltransferase compare
IAI47_05520 -3.6 -1.2 tRNA-Ala compare
IAI47_13690 -3.5 -0.9 cell envelope integrity protein TolA compare
IAI47_18145 -3.5 -3.1 elongation factor Tu compare
IAI47_09055 -3.5 -15.4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_14730 -3.5 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_07015 -3.5 -7.6 ABC transporter ATP-binding protein compare
IAI47_12925 -3.3 -5.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_03135 -3.3 -7.7 outer membrane channel protein TolC compare
IAI47_05420 -3.3 -1.4 PTS glucose transporter subunit IIA compare
IAI47_06320 -3.3 -8.1 phosphate acetyltransferase compare
IAI47_17205 -3.2 -1.6 PTS phosphocarrier protein NPr compare
IAI47_04120 -3.2 -17.6 GTP diphosphokinase compare
IAI47_15595 -3.2 -1.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_12885 -3.1 -9.7 pyruvate formate lyase 1-activating protein compare
IAI47_18520 -3.1 -16.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_07020 -3.1 -1.5 hypothetical protein compare
IAI47_13415 -3.1 -11.9 L,D-transpeptidase family protein compare
IAI47_15635 -3.1 -2.4 RNA polymerase-binding protein DksA compare
IAI47_18470 -3.0 -12.8 ECA oligosaccharide polymerase compare
IAI47_00755 -3.0 -12.0 envelope stress sensor histidine kinase CpxA compare
IAI47_06325 -2.9 -6.8 acetate kinase compare
IAI47_17560 -2.9 -1.7 ROK family transcriptional regulator compare
IAI47_09245 -2.9 -4.8 YmiA family putative membrane protein compare
IAI47_17185 -2.9 -8.5 RNA polymerase factor sigma-54 compare
IAI47_00870 -2.9 -1.0 50S ribosomal protein L31 compare
IAI47_05425 -2.8 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_00300 -2.8 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07165 -2.8 -2.5 exodeoxyribonuclease I compare
IAI47_01820 -2.8 -9.1 two-component system response regulator OmpR compare
IAI47_04505 -2.8 -9.1 transcriptional repressor MprA compare
IAI47_04300 -2.7 -6.4 recombinase RecA compare
IAI47_14555 -2.7 -5.0 hemolysin expression modulator Hha compare
IAI47_17235 -2.7 -10.0 stringent starvation protein A compare
IAI47_08445 -2.7 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_18830 -2.7 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_08450 -2.6 -4.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05155 -2.6 -15.8 polyphosphate kinase 1 compare
IAI47_03375 -2.6 -9.5 peptide chain release factor 3 compare
IAI47_16350 -2.6 -8.4 phosphoserine phosphatase compare
IAI47_01750 -2.6 -6.6 glycerol-3-phosphate dehydrogenase compare
IAI47_03320 -2.6 -7.8 non-heme ferritin compare
IAI47_13725 -2.6 -5.7 cytochrome ubiquinol oxidase subunit I compare
IAI47_15540 -2.6 -11.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_08165 -2.6 -8.1 flagella biosynthesis regulatory protein FliZ compare
IAI47_02590 -2.5 -8.2 RNA chaperone Hfq compare
IAI47_00780 -2.5 -3.0 6-phosphofructokinase compare
IAI47_00660 -2.5 -11.2 putative lipopolysaccharide heptosyltransferase III compare
IAI47_18055 -2.4 -7.3 DNA-binding protein HU-alpha compare
IAI47_13720 -2.4 -5.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_18705 -2.4 -10.3 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_04425 -2.4 -8.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_00930 -2.4 -9.4 DNA-binding transcriptional regulator OxyR compare
IAI47_16085 -2.4 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15600 -2.3 -2.4 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_09305 -2.3 -3.1 cyclic di-GMP phosphodiesterase compare
IAI47_00430 -2.3 -14.6 DNA polymerase I compare
IAI47_00445 -2.3 -10.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_07010 -2.3 -1.8 ABC transporter permease compare
IAI47_03725 -2.3 -7.0 phosphoglycerate dehydrogenase compare
IAI47_03550 -2.3 -8.9 membrane-bound lytic murein transglycosylase MltC compare
IAI47_12480 -2.2 -9.1 autoinducer synthase compare
IAI47_00940 -2.2 -8.5 HTH-type transcriptional repressor FabR compare
IAI47_12760 -2.2 -12.0 porin OmpF compare
IAI47_19550 -2.2 -1.9 DUF1471 domain-containing protein compare
IAI47_00500 -2.2 -10.6 ATP-dependent DNA helicase RecG compare
IAI47_17020 -2.2 -2.7 30S ribosome-binding factor RbfA compare
IAI47_00505 -2.2 -6.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_12470 -2.2 -10.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_00110 -2.1 -6.7 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_12930 -2.1 -3.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_01005 -2.1 -10.8 DUF413 domain-containing protein compare
IAI47_17005 -2.1 -5.9 polyribonucleotide nucleotidyltransferase compare
IAI47_10470 -2.1 -2.1 electron transport complex subunit E compare
IAI47_03820 -2.0 -3.9 site-specific tyrosine recombinase XerD compare
IAI47_03610 -2.0 -4.6 YqgE/AlgH family protein compare
IAI47_18265 -2.0 -2.2 Sec-independent protein translocase subunit TatB compare
IAI47_06245 -2.0 -4.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_01000 -2.0 -11.7 HTH-type transcriptional regulator HdfR compare
IAI47_20850 -2.0 -3.7 TetR/AcrR family transcriptional regulator compare
IAI47_15120 -2.0 -5.8 glutamate 5-kinase compare
IAI47_18400 -2.0 -2.6 tyrosine recombinase XerC compare
IAI47_06475 -1.9 -5.3 transcriptional regulator RcsB compare
IAI47_17255 -1.9 -1.8 DUF1043 family protein compare
IAI47_04855 -1.9 -4.1 anti-sigma-E factor RseA compare
IAI47_14945 -1.9 -3.4 pyrroline-5-carboxylate reductase compare
IAI47_10925 -1.9 -2.5 EAL domain-containing protein compare
IAI47_03240 -1.9 -3.7 TonB system transport protein ExbD compare
IAI47_06450 -1.8 -4.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_11310 -1.8 -3.8 redox-regulated ATPase YchF compare
IAI47_13195 -1.8 -7.3 DNA starvation/stationary phase protection protein Dps compare
IAI47_04895 -1.8 -3.3 pyridoxine 5'-phosphate synthase compare
IAI47_06055 -1.8 -4.5 tRNA-Arg compare
IAI47_16520 -1.7 -6.1 hypothetical protein compare
IAI47_03615 -1.7 -6.8 glutathione synthase compare
IAI47_13770 -1.7 -8.4 citrate synthase compare
IAI47_10520 -1.7 -2.8 pyridoxamine 5'-phosphate oxidase compare
IAI47_10435 -1.7 -5.4 transcription modulator YdgT compare
IAI47_16420 -1.6 -7.8 LacI family DNA-binding transcriptional regulator compare
IAI47_04870 -1.6 -4.8 elongation factor 4 compare
IAI47_16080 -1.6 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_16215 -1.6 -9.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_00585 -1.6 -5.3 DUF3574 domain-containing protein compare
IAI47_09750 -1.6 -5.7 ROK family transcriptional regulator compare
IAI47_13050 -1.6 -2.9 YbjN domain-containing protein compare
IAI47_08850 -1.6 -4.5 septum site-determining protein MinD compare
IAI47_15115 -1.6 -6.8 glutamate-5-semialdehyde dehydrogenase compare
IAI47_03860 -1.5 -5.9 diaminopimelate decarboxylase compare
IAI47_04350 -1.5 -9.4 glutamate--cysteine ligase compare
IAI47_21850 -1.5 -8.4 LacI family DNA-binding transcriptional regulator compare
IAI47_09720 -1.5 -6.3 TetR/AcrR family transcriptional regulator compare
IAI47_03680 -1.5 -8.2 transketolase compare
IAI47_06235 -1.5 -4.6 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_06915 -1.5 -6.7 outer membrane assembly protein AsmA compare
IAI47_07030 -1.5 -5.0 HAD family hydrolase compare
IAI47_06500 -1.5 -5.0 TolC family outer membrane protein compare
IAI47_10775 -1.5 -4.6 ribonuclease T compare
IAI47_13840 -1.5 -2.9 replication initiation negative regulator SeqA compare
IAI47_00710 -1.5 -7.5 glycosyltransferase compare
IAI47_15485 -1.5 -0.8 molecular chaperone Skp compare
IAI47_13065 -1.4 -1.7 DUF1418 family protein compare
IAI47_08960 -1.4 -5.0 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_02090 -1.4 -3.5 elongation factor Tu compare
IAI47_02350 -1.4 -0.9 tRNA-Thr compare
IAI47_09095 -1.4 -3.7 YciU family protein compare
IAI47_21035 -1.4 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_02750 -1.4 -8.1 class 1 fructose-bisphosphatase compare
IAI47_08440 -1.4 -1.3 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00675 -1.4 -8.3 glycosyltransferase family 9 protein compare
IAI47_16205 -1.4 -4.2 threonine synthase compare
IAI47_12060 -1.4 -3.9 beta-ketoacyl-ACP synthase II compare
IAI47_12865 -1.4 -6.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_08845 -1.4 -1.1 cell division topological specificity factor MinE compare
IAI47_17645 -1.4 -2.1 hypothetical protein compare
IAI47_05125 -1.4 -2.7 hypothetical protein compare
IAI47_11500 -1.4 -1.6 type VI secretion system tip protein VgrG compare
IAI47_00375 -1.4 -8.6 ribose operon transcriptional repressor RbsR compare
IAI47_02900 -1.4 -4.3 transcriptional regulator ExuR compare
IAI47_16210 -1.4 -4.4 homoserine kinase compare
IAI47_09755 -1.4 -4.0 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_13900 -1.3 -7.0 asparagine synthase B compare
IAI47_14495 -1.3 -3.0 hypothetical protein compare
IAI47_13145 -1.3 -4.8 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_01825 -1.3 -5.5 two-component system sensor histidine kinase EnvZ compare
IAI47_00455 -1.3 -5.9 nitrogen regulation protein NR(II) compare
IAI47_06510 -1.3 -6.1 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_17215 -1.3 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_04835 -1.3 -6.1 ATP-dependent RNA helicase SrmB compare
IAI47_02380 -1.3 -1.5 DNA-binding transcriptional regulator Fis compare
IAI47_10840 -1.3 -3.5 pyruvate kinase PykF compare
IAI47_03235 -1.3 -3.4 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_17895 -1.3 -4.5 diacylglycerol kinase compare
IAI47_15895 -1.3 -1.8 secA regulator SecM compare
IAI47_14470 -1.3 -1.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_19035 -1.3 -1.2 transcriptional regulator compare
IAI47_15605 -1.3 -1.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00895 -1.3 -7.8 phosphoenolpyruvate carboxylase compare
IAI47_00835 -1.3 -2.0 cell division protein ZapB compare
IAI47_04950 -1.3 -5.2 nitrogen regulatory protein P-II compare
IAI47_04110 -1.3 -9.4 two-component sensor histidine kinase BarA compare
IAI47_06965 -1.3 -1.1 glycosyltransferase family 2 protein compare
IAI47_13890 -1.3 -4.9 ROK family transcriptional regulator compare
IAI47_16390 -1.2 -0.4 tRNA-Leu compare
IAI47_08045 -1.2 -2.1 NUDIX domain-containing protein compare
IAI47_07180 -1.2 -4.7 DUF496 family protein compare
IAI47_08435 -1.2 -1.7 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_12485 -1.2 -6.4 transcriptional regulator SdiA compare
IAI47_12875 -1.2 -5.0 formate transporter FocA compare
IAI47_17225 -1.2 -7.2 sulfite reductase subunit alpha compare
IAI47_15135 -1.2 -8.6 esterase FrsA compare
IAI47_21880 -1.2 -0.5 ParA family protein compare
IAI47_13310 -1.2 -3.8 MerR family transcriptional regulator compare
IAI47_17285 -1.2 -2.0 entericidin A/B family lipoprotein compare
IAI47_03685 -1.2 -5.2 erythrose-4-phosphate dehydrogenase compare
IAI47_14960 -1.2 -1.9 anti-adapter protein IraP compare
IAI47_07025 -1.2 -3.9 glycosyltransferase family 4 protein compare
IAI47_16055 -1.2 -6.8 RNA polymerase-associated protein RapA compare


Specific Phenotypes

For 20 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms