Experiment set8S21 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.5 -4.1 Tol-Pal system protein TolB compare
IAI47_00655 -6.1 -5.5 glycosyltransferase family 4 protein compare
IAI47_08705 -5.8 -11.2 carboxy terminal-processing peptidase compare
IAI47_18265 -5.5 -2.4 Sec-independent protein translocase subunit TatB compare
IAI47_10845 -5.3 -3.7 major outer membrane lipoprotein compare
IAI47_15635 -5.3 -3.8 RNA polymerase-binding protein DksA compare
IAI47_09040 -5.3 -2.5 NAD-dependent epimerase compare
IAI47_07015 -5.2 -8.0 ABC transporter ATP-binding protein compare
IAI47_08700 -5.0 -9.5 RNA chaperone ProQ compare
IAI47_13700 -4.9 -4.8 Tol-Pal system protein TolQ compare
IAI47_08085 -4.9 -4.8 helix-turn-helix domain-containing protein compare
IAI47_15700 -4.8 -14.9 multicopper oxidase CueO compare
IAI47_17000 -4.6 -19.7 lipoprotein NlpI compare
IAI47_16995 -4.6 -2.8 protein YrbN compare
IAI47_12930 -4.5 -3.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_09235 -4.5 -2.5 type I DNA topoisomerase compare
IAI47_13885 -4.4 -2.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_09580 -4.4 -5.7 FNR family transcription factor compare
IAI47_17120 -4.3 -4.2 BolA family iron metabolism protein IbaG compare
IAI47_13720 -4.3 -5.9 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12645 -4.3 -6.8 porin OmpA compare
IAI47_17965 -4.2 -17.7 glucose-6-phosphate isomerase compare
IAI47_12925 -4.2 -4.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_12275 -4.2 -24.8 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_13695 -4.1 -1.1 colicin uptake protein TolR compare
IAI47_00770 -4.1 -1.1 general stress protein compare
IAI47_18400 -4.0 -2.8 tyrosine recombinase XerC compare
IAI47_12280 -4.0 -17.6 glucan biosynthesis protein G compare
IAI47_03135 -4.0 -6.7 outer membrane channel protein TolC compare
IAI47_06915 -4.0 -15.6 outer membrane assembly protein AsmA compare
IAI47_00660 -4.0 -19.6 putative lipopolysaccharide heptosyltransferase III compare
IAI47_17185 -3.9 -8.0 RNA polymerase factor sigma-54 compare
IAI47_05070 -3.9 -1.1 outer membrane protein assembly factor BamB compare
IAI47_13415 -3.8 -16.4 L,D-transpeptidase family protein compare
IAI47_15600 -3.8 -3.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_07010 -3.7 -4.5 ABC transporter permease compare
IAI47_18480 -3.7 -11.8 lipid III flippase WzxE compare
IAI47_13690 -3.7 -1.0 cell envelope integrity protein TolA compare
IAI47_13725 -3.6 -9.0 cytochrome ubiquinol oxidase subunit I compare
IAI47_17020 -3.6 -4.3 30S ribosome-binding factor RbfA compare
IAI47_14395 -3.6 -10.9 Cu(I)-responsive transcriptional regulator compare
IAI47_05420 -3.5 -1.7 PTS glucose transporter subunit IIA compare
IAI47_21880 -3.5 -1.0 ParA family protein compare
IAI47_12885 -3.5 -12.4 pyruvate formate lyase 1-activating protein compare
IAI47_15595 -3.5 -2.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_00940 -3.4 -12.9 HTH-type transcriptional repressor FabR compare
IAI47_10825 -3.4 -2.0 tRNA-Val compare
IAI47_18055 -3.4 -8.2 DNA-binding protein HU-alpha compare
IAI47_15540 -3.4 -13.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_07905 -3.4 -1.3 Arc family DNA-binding protein compare
IAI47_07020 -3.3 -1.8 hypothetical protein compare
IAI47_03820 -3.3 -3.9 site-specific tyrosine recombinase XerD compare
IAI47_11760 -3.3 -2.0 TonB-dependent siderophore receptor compare
IAI47_21850 -3.3 -15.6 LacI family DNA-binding transcriptional regulator compare
IAI47_00330 -3.3 -17.6 low affinity potassium transporter Kup compare
IAI47_04495 -3.2 -21.3 multidrug efflux MFS transporter permease subunit EmrB compare
IAI47_04500 -3.2 -15.0 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA compare
IAI47_05035 -3.1 -2.2 nucleoside-diphosphate kinase compare
IAI47_03375 -3.1 -10.1 peptide chain release factor 3 compare
IAI47_13625 -3.1 -9.6 CDF family zinc transporter ZitB compare
IAI47_00300 -3.1 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04120 -3.0 -18.3 GTP diphosphokinase compare
IAI47_12880 -3.0 -19.8 formate C-acetyltransferase compare
IAI47_15485 -3.0 -1.4 molecular chaperone Skp compare
IAI47_09245 -3.0 -4.4 YmiA family putative membrane protein compare
IAI47_01820 -2.9 -10.3 two-component system response regulator OmpR compare
IAI47_06325 -2.9 -8.0 acetate kinase compare
IAI47_13950 -2.9 -2.2 PhoH family protein compare
IAI47_08445 -2.9 -1.4 Holliday junction branch migration protein RuvA compare
IAI47_14060 -2.9 -6.1 twin-arginine translocase subunit TatE compare
IAI47_18470 -2.9 -11.6 ECA oligosaccharide polymerase compare
IAI47_05425 -2.9 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_08165 -2.8 -10.1 flagella biosynthesis regulatory protein FliZ compare
IAI47_01825 -2.8 -12.7 two-component system sensor histidine kinase EnvZ compare
IAI47_07930 -2.8 -2.0 DUF2158 domain-containing protein compare
IAI47_08450 -2.8 -4.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06455 -2.8 -7.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_18520 -2.7 -14.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_21600 -2.7 -1.9 EamA family transporter compare
IAI47_14075 -2.7 -3.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_15605 -2.7 -1.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_14730 -2.6 -1.4 exodeoxyribonuclease VII small subunit compare
IAI47_17005 -2.6 -6.1 polyribonucleotide nucleotidyltransferase compare
IAI47_17235 -2.6 -10.8 stringent starvation protein A compare
IAI47_03615 -2.6 -9.4 glutathione synthase compare
IAI47_21595 -2.6 -8.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_01750 -2.5 -7.4 glycerol-3-phosphate dehydrogenase compare
IAI47_21655 -2.5 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_03240 -2.5 -5.8 TonB system transport protein ExbD compare
IAI47_06450 -2.5 -5.6 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_01005 -2.5 -12.4 DUF413 domain-containing protein compare
IAI47_13050 -2.5 -5.0 YbjN domain-containing protein compare
IAI47_00780 -2.5 -4.1 6-phosphofructokinase compare
IAI47_00110 -2.4 -8.9 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_00760 -2.4 -3.5 envelope stress response regulator transcription factor CpxR compare
IAI47_18420 -2.4 -11.7 class I adenylate cyclase compare
IAI47_12760 -2.4 -13.0 porin OmpF compare
IAI47_02400 -2.4 -2.1 YhdT family protein compare
IAI47_00455 -2.4 -9.4 nitrogen regulation protein NR(II) compare
IAI47_03235 -2.4 -6.1 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_06320 -2.3 -8.9 phosphate acetyltransferase compare
IAI47_17155 -2.3 -9.5 calcium/sodium antiporter compare
IAI47_03680 -2.3 -12.9 transketolase compare
IAI47_06560 -2.3 -9.4 DUF3413 domain-containing protein compare
IAI47_04505 -2.3 -8.3 transcriptional repressor MprA compare
IAI47_02605 -2.3 -8.6 protease modulator HflC compare
IAI47_00755 -2.2 -9.2 envelope stress sensor histidine kinase CpxA compare
IAI47_11515 -2.2 -2.2 hypothetical protein compare
IAI47_00500 -2.1 -10.8 ATP-dependent DNA helicase RecG compare
IAI47_09055 -2.1 -10.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07180 -2.1 -6.9 DUF496 family protein compare
IAI47_13475 -2.1 -3.6 molybdopterin synthase catalytic subunit MoaE compare
IAI47_09395 -2.1 -3.0 phage shock protein PspA compare
IAI47_15005 -2.1 -1.7 hypothetical protein compare
IAI47_07025 -2.0 -4.4 glycosyltransferase family 4 protein compare
IAI47_00870 -2.0 -1.1 50S ribosomal protein L31 compare
IAI47_08850 -2.0 -5.5 septum site-determining protein MinD compare
IAI47_04300 -2.0 -7.6 recombinase RecA compare
IAI47_10840 -2.0 -4.7 pyruvate kinase PykF compare
IAI47_16085 -2.0 -1.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_08440 -1.9 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09750 -1.9 -7.4 ROK family transcriptional regulator compare
IAI47_17205 -1.9 -1.7 PTS phosphocarrier protein NPr compare
IAI47_18830 -1.9 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_17580 -1.9 -6.1 hypothetical protein compare
IAI47_00445 -1.9 -7.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_14945 -1.9 -3.3 pyrroline-5-carboxylate reductase compare
IAI47_06400 -1.8 -2.4 NADH-quinone oxidoreductase subunit J compare
IAI47_07165 -1.8 -2.6 exodeoxyribonuclease I compare
IAI47_18415 -1.8 -2.4 lipoprotein compare
IAI47_03550 -1.8 -8.6 membrane-bound lytic murein transglycosylase MltC compare
IAI47_01180 -1.8 -1.5 prolyl oligopeptidase family serine peptidase compare
IAI47_11310 -1.8 -3.9 redox-regulated ATPase YchF compare
IAI47_07030 -1.8 -5.4 HAD family hydrolase compare
IAI47_15110 -1.8 -4.6 chromophore lyase compare
IAI47_00450 -1.7 -8.1 nitrogen regulation protein NR(I) compare
IAI47_08035 -1.7 -2.1 flagellar hook-basal body complex protein FliE compare
IAI47_02380 -1.7 -2.1 DNA-binding transcriptional regulator Fis compare
IAI47_16520 -1.7 -6.9 hypothetical protein compare
IAI47_06940 -1.7 -0.6 tyrosine-protein kinase Wzc compare
IAI47_06965 -1.7 -1.7 glycosyltransferase family 2 protein compare
IAI47_16405 -1.7 -3.7 siderophore-iron reductase FhuF compare
IAI47_18705 -1.7 -7.9 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_17140 -1.7 -8.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
IAI47_15970 -1.7 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_18410 -1.7 -4.2 diaminopimelate epimerase compare
IAI47_06565 -1.7 -1.0 YejL family protein compare
IAI47_00460 -1.7 -2.3 glutamate--ammonia ligase compare
IAI47_06380 -1.6 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_01000 -1.6 -10.2 HTH-type transcriptional regulator HdfR compare
IAI47_01325 -1.6 -10.8 glutathione-disulfide reductase compare
IAI47_13310 -1.6 -4.7 MerR family transcriptional regulator compare
IAI47_10925 -1.6 -3.9 EAL domain-containing protein compare
IAI47_04870 -1.6 -5.3 elongation factor 4 compare
IAI47_06135 -1.6 -2.5 phosphohistidine phosphatase SixA compare
IAI47_17895 -1.6 -6.3 diacylglycerol kinase compare
IAI47_04425 -1.5 -7.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_13850 -1.5 -3.7 LexA regulated protein compare
IAI47_09495 -1.5 -8.2 2-hydroxyacid dehydrogenase compare
IAI47_00505 -1.5 -4.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_04805 -1.5 -3.8 outer membrane protein assembly factor BamE compare
IAI47_18145 -1.5 -1.9 elongation factor Tu compare
IAI47_17125 -1.5 -6.6 lipid asymmetry maintenance protein MlaB compare
IAI47_06245 -1.5 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00675 -1.5 -10.1 glycosyltransferase family 9 protein compare
IAI47_12375 -1.5 -1.2 acyl carrier protein compare
IAI47_09360 -1.5 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_03905 -1.5 -7.4 TerC family protein compare
IAI47_07250 -1.5 -2.6 tRNA-Asn compare
IAI47_19620 -1.5 -7.1 LacI family DNA-binding transcriptional regulator compare
IAI47_16095 -1.4 -4.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_07000 -1.4 -5.7 UDP-glucose 4-epimerase GalE compare
IAI47_18840 -1.4 -2.6 membrane protein insertion efficiency factor YidD compare
IAI47_17130 -1.4 -7.4 phospholipid-binding protein MlaC compare
IAI47_05465 -1.4 -3.2 bile acid:sodium symporter compare
IAI47_06420 -1.4 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_02600 -1.4 -6.6 FtsH protease activity modulator HflK compare
IAI47_17145 -1.3 -7.9 phospholipid ABC transporter ATP-binding protein MlaF compare
IAI47_07135 -1.3 -5.2 DeoR/GlpR transcriptional regulator compare
IAI47_08855 -1.3 -4.6 septum site-determining protein MinC compare
IAI47_05520 -1.3 -0.7 tRNA-Ala compare
IAI47_17255 -1.3 -1.9 DUF1043 family protein compare
IAI47_16055 -1.3 -7.8 RNA polymerase-associated protein RapA compare
IAI47_10320 -1.3 -0.9 Rrf2 family transcriptional regulator compare
IAI47_06405 -1.3 -2.5 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_09720 -1.2 -5.5 TetR/AcrR family transcriptional regulator compare
IAI47_05535 -1.2 -6.8 Nramp family divalent metal transporter compare
IAI47_07005 -1.2 -2.5 glycosyltransferase family 4 protein compare
IAI47_17135 -1.2 -4.4 outer membrane lipid asymmetry maintenance protein MlaD compare
IAI47_13495 -1.2 -4.0 GTP 3',8-cyclase MoaA compare
IAI47_17215 -1.2 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_00465 -1.2 -1.8 ribosome-dependent GTPase TypA compare
IAI47_09675 -1.2 -2.1 YoaK family small membrane protein compare
IAI47_06110 -1.2 -5.9 phospholipid-binding lipoprotein MlaA compare
IAI47_04350 -1.2 -7.6 glutamate--cysteine ligase compare
IAI47_00430 -1.2 -7.9 DNA polymerase I compare
IAI47_05090 -1.2 -1.3 hypothetical protein compare
IAI47_16410 -1.2 -3.5 YbaK/EbsC family protein compare
IAI47_05755 -1.2 -1.8 hypothetical protein compare
IAI47_21690 -1.2 -6.4 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

For 23 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms