Experiment set8S21 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50

Group: survival
Media: + Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50
Culturing: MT058_ML2, tube, Aerobic
By: Mike Thorgersen on 6/27/23

Specific Phenotypes

For 23 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4 and 2 mg/mL CCCP; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria 2
Beta-Glucoside Metabolism 1
Copper homeostasis 1
D-gluconate and ketogluconates metabolism 1
Entner-Doudoroff Pathway 1
Fermentations: Lactate 1
Fermentations: Mixed acid 1
Glutathione: Redox cycle 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Hfl operon 1
LOS core oligosaccharide biosynthesis 1
Maltose and Maltodextrin Utilization 1
Respiratory dehydrogenases 1 1
Sucrose utilization 1
Transport of Manganese 1
Twin-arginine translocation system 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyruvate fermentation to (R)-lactate 1 1 1
L-alanine degradation II (to D-lactate) 3 3 1
glutathione-peroxide redox reactions 3 2 1
vancomycin resistance I 3 2 1
oleate biosynthesis III (cyanobacteria) 3 2 1
CDP-diacylglycerol biosynthesis I 4 4 1
CDP-diacylglycerol biosynthesis II 4 4 1
glucose and glucose-1-phosphate degradation 5 5 1
glucose degradation (oxidative) 5 4 1
phosphatidate biosynthesis (yeast) 5 3 1
superpathway of phospholipid biosynthesis III (E. coli) 12 12 2
phosphatidylglycerol biosynthesis I 6 6 1
phosphatidylglycerol biosynthesis II 6 6 1
superpathway of stearidonate biosynthesis (cyanobacteria) 6 2 1
L-alanine degradation VI (reductive Stickland reaction) 6 2 1
palmitoyl ethanolamide biosynthesis 6 2 1
L-ascorbate biosynthesis VIII (engineered pathway) 7 5 1
diacylglycerol and triacylglycerol biosynthesis 7 3 1
stigma estolide biosynthesis 7 2 1
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales) 8 4 1
anandamide biosynthesis II 8 2 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 7 1
superpathway of L-alanine fermentation (Stickland reaction) 9 4 1
lipid A-core biosynthesis (E. coli K-12) 10 4 1
lipid A-core biosynthesis (Salmonella) 10 3 1
anandamide biosynthesis I 12 4 1
superpathway of cardiolipin biosynthesis (bacteria) 13 11 1
superpathway of phospholipid biosynthesis II (plants) 28 10 2
mixed acid fermentation 16 14 1
superpathway of glucose and xylose degradation 17 16 1
heterolactic fermentation 18 16 1
superpathway of Kdo2-lipid A biosynthesis 25 19 1