Experiment set8S20 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.2 -4.8 Tol-Pal system protein TolB compare
IAI47_08705 -5.4 -12.1 carboxy terminal-processing peptidase compare
IAI47_09580 -5.2 -3.6 FNR family transcription factor compare
IAI47_08085 -4.1 -6.2 helix-turn-helix domain-containing protein compare
IAI47_15635 -4.0 -3.4 RNA polymerase-binding protein DksA compare
IAI47_13695 -3.9 -1.3 colicin uptake protein TolR compare
IAI47_05070 -3.7 -1.2 outer membrane protein assembly factor BamB compare
IAI47_09040 -3.6 -2.6 NAD-dependent epimerase compare
IAI47_06965 -3.5 -2.0 glycosyltransferase family 2 protein compare
IAI47_12645 -3.4 -5.4 porin OmpA compare
IAI47_05090 -3.3 -5.2 hypothetical protein compare
IAI47_06940 -3.2 -1.1 tyrosine-protein kinase Wzc compare
IAI47_07020 -3.1 -2.0 hypothetical protein compare
IAI47_15600 -3.1 -3.6 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_09235 -3.1 -2.6 type I DNA topoisomerase compare
IAI47_05155 -3.1 -20.0 polyphosphate kinase 1 compare
IAI47_03820 -3.1 -3.6 site-specific tyrosine recombinase XerD compare
IAI47_00300 -2.9 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07010 -2.9 -3.0 ABC transporter permease compare
IAI47_00655 -2.8 -5.2 glycosyltransferase family 4 protein compare
IAI47_00780 -2.8 -2.7 6-phosphofructokinase compare
IAI47_12880 -2.6 -18.1 formate C-acetyltransferase compare
IAI47_18470 -2.6 -12.8 ECA oligosaccharide polymerase compare
IAI47_18400 -2.6 -3.0 tyrosine recombinase XerC compare
IAI47_13950 -2.6 -2.1 PhoH family protein compare
IAI47_17020 -2.6 -3.0 30S ribosome-binding factor RbfA compare
IAI47_10925 -2.5 -4.1 EAL domain-containing protein compare
IAI47_12885 -2.5 -10.0 pyruvate formate lyase 1-activating protein compare
IAI47_17000 -2.5 -11.5 lipoprotein NlpI compare
IAI47_09055 -2.4 -13.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_11760 -2.4 -2.3 TonB-dependent siderophore receptor compare
IAI47_04300 -2.4 -6.5 recombinase RecA compare
IAI47_18055 -2.3 -6.0 DNA-binding protein HU-alpha compare
IAI47_06320 -2.3 -7.8 phosphate acetyltransferase compare
IAI47_07030 -2.2 -9.7 HAD family hydrolase compare
IAI47_08165 -2.2 -8.6 flagella biosynthesis regulatory protein FliZ compare
IAI47_08700 -2.2 -4.9 RNA chaperone ProQ compare
IAI47_07475 -2.2 -1.4 hypothetical protein compare
IAI47_17155 -2.1 -11.0 calcium/sodium antiporter compare
IAI47_07165 -2.1 -2.5 exodeoxyribonuclease I compare
IAI47_18480 -2.1 -8.4 lipid III flippase WzxE compare
IAI47_12930 -2.0 -4.3 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_07015 -2.0 -6.2 ABC transporter ATP-binding protein compare
IAI47_01135 -2.0 -0.9 hypothetical protein compare
IAI47_17965 -1.9 -9.2 glucose-6-phosphate isomerase compare
IAI47_17005 -1.9 -6.4 polyribonucleotide nucleotidyltransferase compare
IAI47_00940 -1.9 -8.0 HTH-type transcriptional repressor FabR compare
IAI47_06325 -1.8 -5.1 acetate kinase compare
IAI47_16520 -1.8 -9.6 hypothetical protein compare
IAI47_17120 -1.8 -3.0 BolA family iron metabolism protein IbaG compare
IAI47_17215 -1.8 -1.0 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_01750 -1.8 -6.7 glycerol-3-phosphate dehydrogenase compare
IAI47_00760 -1.7 -3.4 envelope stress response regulator transcription factor CpxR compare
IAI47_14075 -1.7 -2.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_17235 -1.7 -9.7 stringent starvation protein A compare
IAI47_06455 -1.7 -4.9 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_08445 -1.7 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_18145 -1.7 -2.2 elongation factor Tu compare
IAI47_05425 -1.6 -4.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_03240 -1.6 -4.0 TonB system transport protein ExbD compare
IAI47_05520 -1.6 -1.3 tRNA-Ala compare
IAI47_06450 -1.6 -4.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_15485 -1.6 -1.2 molecular chaperone Skp compare
IAI47_08440 -1.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_13690 -1.6 -0.7 cell envelope integrity protein TolA compare
IAI47_11450 -1.6 -5.7 ankyrin repeat domain-containing protein compare
IAI47_05195 -1.6 -2.1 DnaA inactivator Hda compare
IAI47_18830 -1.6 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_21600 -1.6 -2.4 EamA family transporter compare
IAI47_06565 -1.6 -1.7 YejL family protein compare
IAI47_06980 -1.5 -2.5 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_15595 -1.5 -1.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_10825 -1.5 -1.3 tRNA-Val compare
IAI47_14495 -1.5 -4.2 hypothetical protein compare
IAI47_04800 -1.5 -1.0 RnfH family protein compare
IAI47_16990 -1.5 -2.8 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_06675 -1.5 -2.8 DUF1232 domain-containing protein compare
IAI47_10470 -1.4 -2.1 electron transport complex subunit E compare
IAI47_10840 -1.4 -3.6 pyruvate kinase PykF compare
IAI47_04895 -1.4 -3.2 pyridoxine 5'-phosphate synthase compare
IAI47_17415 -1.3 -4.3 DUF3304 domain-containing protein compare
IAI47_15605 -1.3 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_08850 -1.3 -3.8 septum site-determining protein MinD compare
IAI47_00430 -1.3 -8.6 DNA polymerase I compare
IAI47_00675 -1.3 -9.7 glycosyltransferase family 9 protein compare
IAI47_00500 -1.3 -7.7 ATP-dependent DNA helicase RecG compare
IAI47_11610 -1.3 -6.1 serine/threonine-protein phosphatase compare
IAI47_18420 -1.2 -8.1 class I adenylate cyclase compare
IAI47_07000 -1.2 -6.2 UDP-glucose 4-epimerase GalE compare
IAI47_03680 -1.2 -7.5 transketolase compare
IAI47_13725 -1.2 -3.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_03235 -1.2 -4.1 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_02585 -1.2 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_12370 -1.2 -2.5 acyl carrier protein compare
IAI47_03375 -1.2 -6.2 peptide chain release factor 3 compare
IAI47_07450 -1.1 -2.5 winged helix-turn-helix domain-containing protein compare
IAI47_09240 -1.1 -2.2 HTH-type transcriptional regulator CysB compare
IAI47_13390 -1.1 -7.1 mechanosensitive ion channel family protein compare
IAI47_13700 -1.1 -2.6 Tol-Pal system protein TolQ compare
IAI47_19890 -1.1 -2.1 hypothetical protein compare
IAI47_00505 -1.1 -3.2 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_09300 -1.1 -4.4 crotonase/enoyl-CoA hydratase family protein compare
IAI47_00465 -1.1 -1.5 ribosome-dependent GTPase TypA compare
IAI47_16600 -1.1 -1.4 tRNA-OTHER compare
IAI47_16930 -1.1 -3.2 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI47_07025 -1.1 -3.6 glycosyltransferase family 4 protein compare
IAI47_17205 -1.1 -1.3 PTS phosphocarrier protein NPr compare
IAI47_07550 -1.1 -0.9 tRNA-Asn compare
IAI47_06475 -1.1 -3.6 transcriptional regulator RcsB compare
IAI47_00445 -1.1 -5.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_18520 -1.1 -7.2 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_16085 -1.1 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_16490 -1.1 -2.6 PTS sugar transporter subunit IIA compare
IAI47_07180 -1.1 -4.8 DUF496 family protein compare
IAI47_12865 -1.0 -5.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_11220 -1.0 -4.4 serine/threonine-protein phosphatase compare
IAI47_20600 -1.0 -1.3 hypothetical protein compare
IAI47_02090 -1.0 -2.8 elongation factor Tu compare
IAI47_08450 -1.0 -2.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_13890 -1.0 -5.0 ROK family transcriptional regulator compare
IAI47_12275 -1.0 -8.4 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_11685 -1.0 -5.5 DotU family type VI secretion system protein compare
IAI47_15725 -1.0 -4.2 DeoR/GlpR transcriptional regulator compare
IAI47_21675 -1.0 -3.1 helix-turn-helix domain-containing protein compare
IAI47_07005 -1.0 -1.8 glycosyltransferase family 4 protein compare
IAI47_13065 -1.0 -1.2 DUF1418 family protein compare
IAI47_05810 -1.0 -1.8 hypothetical protein compare
IAI47_02040 -1.0 -4.3 peptidylprolyl isomerase compare
IAI47_21595 -1.0 -5.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_05050 -1.0 -2.5 cytoskeleton protein RodZ compare
IAI47_01005 -1.0 -6.4 DUF413 domain-containing protein compare
IAI47_04865 -1.0 -1.9 SoxR-reducing system protein RseC compare
IAI47_00855 -1.0 -2.5 cell division protein FtsN compare
IAI47_14170 -1.0 -3.1 hypothetical protein compare
IAI47_16055 -1.0 -7.1 RNA polymerase-associated protein RapA compare
IAI47_10145 -1.0 -2.8 winged helix-turn-helix transcriptional regulator compare
IAI47_08845 -1.0 -0.8 cell division topological specificity factor MinE compare
IAI47_11310 -1.0 -2.4 redox-regulated ATPase YchF compare
IAI47_11210 -1.0 -6.0 type VI secretion system-associated protein TagF compare
IAI47_17475 -0.9 -2.2 type VI secretion system contractile sheath small subunit compare
IAI47_04400 -0.9 -3.5 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17185 -0.9 -3.9 RNA polymerase factor sigma-54 compare
IAI47_12875 -0.9 -4.5 formate transporter FocA compare
IAI47_01820 -0.9 -4.6 two-component system response regulator OmpR compare
IAI47_13935 -0.9 -0.8 tRNA-Gln compare
IAI47_13720 -0.9 -2.2 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12280 -0.9 -5.8 glucan biosynthesis protein G compare
IAI47_12790 -0.9 -0.6 chromosome partition protein MukE compare
IAI47_11655 -0.9 -1.2 hypothetical protein compare
IAI47_18580 -0.9 -6.1 insulinase family protein compare
IAI47_09395 -0.9 -2.1 phage shock protein PspA compare
IAI47_14470 -0.9 -1.5 YbaB/EbfC family nucleoid-associated protein compare
IAI47_03550 -0.9 -5.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09245 -0.9 -1.7 YmiA family putative membrane protein compare
IAI47_04505 -0.9 -4.8 transcriptional repressor MprA compare
IAI47_09440 -0.9 -4.9 transcriptional regulator TyrR compare
IAI47_02875 -0.9 -4.2 phage holin family protein compare
IAI47_11850 -0.9 -2.7 hypothetical protein compare
IAI47_13050 -0.9 -3.0 YbjN domain-containing protein compare
IAI47_03915 -0.9 -2.8 RNA pyrophosphohydrolase compare
IAI47_05665 -0.9 -2.2 hypothetical protein compare
IAI47_06135 -0.9 -2.2 phosphohistidine phosphatase SixA compare
IAI47_21830 -0.9 -1.3 hypothetical protein compare
IAI47_05630 -0.9 -2.1 hypothetical protein compare
IAI47_17165 -0.8 -4.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_09345 -0.8 -3.6 LysR family transcriptional regulator compare
IAI47_03805 -0.8 -3.2 FAD assembly factor SdhE compare
IAI47_16995 -0.8 -0.8 protein YrbN compare
IAI47_05525 -0.8 -0.7 tRNA-Ala compare
IAI47_02515 -0.8 -2.1 transcriptional regulator ArgR compare
IAI47_05535 -0.8 -4.7 Nramp family divalent metal transporter compare
IAI47_13310 -0.8 -2.5 MerR family transcriptional regulator compare
IAI47_03725 -0.8 -4.4 phosphoglycerate dehydrogenase compare
IAI47_17255 -0.8 -1.0 DUF1043 family protein compare
IAI47_07360 -0.8 -1.9 hypothetical protein compare
IAI47_03815 -0.8 -2.8 flavodoxin FldB compare
IAI47_13745 -0.8 -1.9 2-oxoglutarate dehydrogenase E1 component compare
IAI47_04775 -0.8 -1.4 SIR2 family protein compare
IAI47_00730 -0.8 -1.7 glutaredoxin 3 compare
IAI47_03640 -0.8 -5.4 glycosyltransferase compare
IAI47_08105 -0.7 -1.2 DinI family protein compare
IAI47_08335 -0.7 -3.2 chemotaxis response regulator CheY compare
IAI47_20415 -0.7 -4.2 two-component system response regulator DcuR compare
IAI47_00110 -0.7 -3.8 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_11260 -0.7 -2.6 SirB2 family protein compare
IAI47_03135 -0.7 -3.2 outer membrane channel protein TolC compare
IAI47_03615 -0.7 -4.1 glutathione synthase compare
IAI47_11115 -0.7 -1.9 hypothetical protein compare
IAI47_05120 -0.7 -2.1 DUF2158 domain-containing protein compare
IAI47_14640 -0.7 -3.1 DNA-binding protein HU-beta compare
IAI47_09305 -0.7 -1.7 cyclic di-GMP phosphodiesterase compare
IAI47_03645 -0.7 -5.3 O-antigen ligase family protein compare
IAI47_15920 -0.7 -2.5 D-alanine--D-alanine ligase compare
IAI47_10675 -0.7 -2.6 hypothetical protein compare
IAI47_07530 -0.7 -2.6 type III restriction-modification system endonuclease compare
IAI47_07775 -0.7 -2.3 phosphonate C-P lyase system protein PhnK compare
IAI47_10590 -0.7 -2.2 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_04870 -0.7 -2.1 elongation factor 4 compare
IAI47_08300 -0.7 -4.5 chemotaxis protein CheA compare
IAI47_15540 -0.7 -4.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms