Experiment set8S2 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -6.2 -4.3 RNA polymerase-binding protein DksA compare
IAI47_13685 -5.9 -4.8 Tol-Pal system protein TolB compare
IAI47_08705 -5.7 -11.6 carboxy terminal-processing peptidase compare
IAI47_09040 -5.1 -2.9 NAD-dependent epimerase compare
IAI47_08085 -5.1 -3.5 helix-turn-helix domain-containing protein compare
IAI47_17000 -4.8 -15.5 lipoprotein NlpI compare
IAI47_12275 -4.8 -23.0 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_12280 -4.8 -14.7 glucan biosynthesis protein G compare
IAI47_08700 -4.7 -9.6 RNA chaperone ProQ compare
IAI47_18480 -4.7 -16.5 lipid III flippase WzxE compare
IAI47_13720 -4.6 -5.5 cytochrome d ubiquinol oxidase subunit II compare
IAI47_12925 -4.5 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_07015 -4.5 -9.5 ABC transporter ATP-binding protein compare
IAI47_00655 -4.4 -3.6 glycosyltransferase family 4 protein compare
IAI47_09580 -4.4 -5.2 FNR family transcription factor compare
IAI47_18520 -4.4 -22.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12790 -4.2 -1.4 chromosome partition protein MukE compare
IAI47_07010 -4.2 -3.0 ABC transporter permease compare
IAI47_12930 -4.1 -4.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_13695 -4.0 -1.3 colicin uptake protein TolR compare
IAI47_12645 -4.0 -6.6 porin OmpA compare
IAI47_10845 -3.9 -5.2 major outer membrane lipoprotein compare
IAI47_05070 -3.8 -1.3 outer membrane protein assembly factor BamB compare
IAI47_13700 -3.8 -5.8 Tol-Pal system protein TolQ compare
IAI47_13725 -3.8 -8.4 cytochrome ubiquinol oxidase subunit I compare
IAI47_05155 -3.8 -20.1 polyphosphate kinase 1 compare
IAI47_18470 -3.7 -14.6 ECA oligosaccharide polymerase compare
IAI47_17235 -3.6 -12.6 stringent starvation protein A compare
IAI47_13690 -3.6 -1.2 cell envelope integrity protein TolA compare
IAI47_14470 -3.6 -4.1 YbaB/EbfC family nucleoid-associated protein compare
IAI47_10320 -3.5 -1.6 Rrf2 family transcriptional regulator compare
IAI47_05420 -3.5 -2.0 PTS glucose transporter subunit IIA compare
IAI47_09245 -3.4 -4.4 YmiA family putative membrane protein compare
IAI47_01750 -3.4 -8.7 glycerol-3-phosphate dehydrogenase compare
IAI47_06940 -3.3 -1.1 tyrosine-protein kinase Wzc compare
IAI47_09235 -3.3 -2.6 type I DNA topoisomerase compare
IAI47_18055 -3.3 -6.8 DNA-binding protein HU-alpha compare
IAI47_00940 -3.3 -11.5 HTH-type transcriptional repressor FabR compare
IAI47_21600 -3.3 -2.4 EamA family transporter compare
IAI47_11760 -3.3 -2.2 TonB-dependent siderophore receptor compare
IAI47_00930 -3.2 -12.0 DNA-binding transcriptional regulator OxyR compare
IAI47_00780 -3.1 -2.1 6-phosphofructokinase compare
IAI47_00300 -3.0 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_05425 -3.0 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06325 -2.9 -7.9 acetate kinase compare
IAI47_07030 -2.9 -6.7 HAD family hydrolase compare
IAI47_05195 -2.9 -3.4 DnaA inactivator Hda compare
IAI47_04300 -2.9 -6.8 recombinase RecA compare
IAI47_13885 -2.8 -2.9 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_07025 -2.8 -6.1 glycosyltransferase family 4 protein compare
IAI47_03240 -2.7 -5.8 TonB system transport protein ExbD compare
IAI47_13950 -2.7 -2.2 PhoH family protein compare
IAI47_06320 -2.7 -8.9 phosphate acetyltransferase compare
IAI47_14075 -2.7 -2.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00430 -2.7 -15.2 DNA polymerase I compare
IAI47_17155 -2.7 -11.7 calcium/sodium antiporter compare
IAI47_02380 -2.6 -3.1 DNA-binding transcriptional regulator Fis compare
IAI47_05090 -2.6 -4.4 hypothetical protein compare
IAI47_08710 -2.6 -9.3 protease HtpX compare
IAI47_15605 -2.6 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00445 -2.5 -10.6 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_04505 -2.5 -8.2 transcriptional repressor MprA compare
IAI47_17580 -2.4 -8.6 hypothetical protein compare
IAI47_04865 -2.4 -3.3 SoxR-reducing system protein RseC compare
IAI47_01355 -2.4 -6.4 universal stress protein UspA compare
IAI47_07020 -2.4 -1.8 hypothetical protein compare
IAI47_19780 -2.4 -7.3 TetR/AcrR family transcriptional regulator compare
IAI47_08450 -2.4 -4.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_17965 -2.4 -11.7 glucose-6-phosphate isomerase compare
IAI47_09055 -2.4 -12.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06455 -2.3 -7.1 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_09305 -2.3 -3.5 cyclic di-GMP phosphodiesterase compare
IAI47_06395 -2.3 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_08035 -2.3 -2.5 flagellar hook-basal body complex protein FliE compare
IAI47_12880 -2.3 -15.2 formate C-acetyltransferase compare
IAI47_03375 -2.3 -9.7 peptide chain release factor 3 compare
IAI47_05580 -2.3 -2.1 membrane protein YpdK compare
IAI47_14700 -2.3 -8.6 protoheme IX farnesyltransferase compare
IAI47_00675 -2.3 -14.5 glycosyltransferase family 9 protein compare
IAI47_00755 -2.3 -9.4 envelope stress sensor histidine kinase CpxA compare
IAI47_03135 -2.3 -7.0 outer membrane channel protein TolC compare
IAI47_03645 -2.2 -13.6 O-antigen ligase family protein compare
IAI47_18490 -2.2 -3.9 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_06450 -2.2 -5.3 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_13405 -2.2 -6.0 DedA family protein compare
IAI47_13925 -2.2 -1.8 tRNA-Met compare
IAI47_03640 -2.2 -13.1 glycosyltransferase compare
IAI47_18400 -2.2 -3.2 tyrosine recombinase XerC compare
IAI47_04895 -2.1 -4.3 pyridoxine 5'-phosphate synthase compare
IAI47_00670 -2.1 -13.1 sugar glycosyltransferase compare
IAI47_12885 -2.1 -6.8 pyruvate formate lyase 1-activating protein compare
IAI47_13745 -2.0 -4.2 2-oxoglutarate dehydrogenase E1 component compare
IAI47_01650 -2.0 -9.9 gluconate operon transcriptional repressor GntR compare
IAI47_15600 -2.0 -2.5 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_05050 -1.9 -5.2 cytoskeleton protein RodZ compare
IAI47_13765 -1.9 -2.8 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_13415 -1.9 -9.2 L,D-transpeptidase family protein compare
IAI47_16995 -1.9 -2.1 protein YrbN compare
IAI47_14640 -1.9 -5.3 DNA-binding protein HU-beta compare
IAI47_11515 -1.8 -1.8 hypothetical protein compare
IAI47_11475 -1.8 -1.5 hypothetical protein compare
IAI47_00110 -1.8 -5.8 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_16520 -1.8 -9.3 hypothetical protein compare
IAI47_14730 -1.8 -1.3 exodeoxyribonuclease VII small subunit compare
IAI47_13890 -1.8 -7.7 ROK family transcriptional regulator compare
IAI47_14945 -1.8 -3.5 pyrroline-5-carboxylate reductase compare
IAI47_14695 -1.8 -4.6 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_07005 -1.8 -2.9 glycosyltransferase family 4 protein compare
IAI47_15980 -1.8 -8.4 catabolite repressor/activator compare
IAI47_15485 -1.7 -1.3 molecular chaperone Skp compare
IAI47_12170 -1.7 -6.8 flagellar basal body P-ring formation protein FlgA compare
IAI47_13390 -1.7 -8.6 mechanosensitive ion channel family protein compare
IAI47_21595 -1.7 -5.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_03235 -1.7 -5.5 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_11830 -1.7 -5.5 muramoyltetrapeptide carboxypeptidase compare
IAI47_05035 -1.7 -2.7 nucleoside-diphosphate kinase compare
IAI47_09750 -1.6 -6.0 ROK family transcriptional regulator compare
IAI47_13740 -1.6 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_07000 -1.6 -5.9 UDP-glucose 4-epimerase GalE compare
IAI47_12130 -1.6 -8.5 flagellar basal body P-ring protein FlgI compare
IAI47_00885 -1.6 -9.1 bifunctional aspartate kinase/homoserine dehydrogenase II compare
IAI47_14555 -1.6 -4.5 hemolysin expression modulator Hha compare
IAI47_08440 -1.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_03820 -1.6 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_10840 -1.5 -4.1 pyruvate kinase PykF compare
IAI47_09100 -1.5 -7.4 cardiolipin synthase compare
IAI47_08285 -1.5 -6.2 flagellar transcriptional regulator FlhC compare
IAI47_17215 -1.5 -1.1 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_06245 -1.5 -3.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05535 -1.5 -6.2 Nramp family divalent metal transporter compare
IAI47_07975 -1.5 -4.5 flagellar biosynthesis protein FliQ compare
IAI47_15725 -1.5 -4.4 DeoR/GlpR transcriptional regulator compare
IAI47_15155 -1.5 -4.3 DUF943 family protein compare
IAI47_16405 -1.5 -2.4 siderophore-iron reductase FhuF compare
IAI47_07995 -1.5 -7.4 flagellar motor switch protein FliM compare
IAI47_18420 -1.4 -7.3 class I adenylate cyclase compare
IAI47_08280 -1.4 -5.8 flagellar transcriptional regulator FlhD compare
IAI47_11935 -1.4 -8.5 two-component system sensor histidine kinase PhoQ compare
IAI47_10565 -1.4 -1.9 DUF4113 domain-containing protein compare
IAI47_03680 -1.4 -8.6 transketolase compare
IAI47_11610 -1.4 -6.1 serine/threonine-protein phosphatase compare
IAI47_08850 -1.4 -3.9 septum site-determining protein MinD compare
IAI47_15110 -1.4 -4.1 chromophore lyase compare
IAI47_12125 -1.4 -5.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_04105 -1.3 -5.7 glycerate kinase compare
IAI47_17005 -1.3 -5.9 polyribonucleotide nucleotidyltransferase compare
IAI47_11210 -1.3 -6.3 type VI secretion system-associated protein TagF compare
IAI47_08350 -1.3 -5.1 flagellar biosynthesis protein FlhA compare
IAI47_12165 -1.3 -4.5 flagellar basal body rod protein FlgB compare
IAI47_07450 -1.3 -2.8 winged helix-turn-helix domain-containing protein compare
IAI47_09345 -1.3 -4.9 LysR family transcriptional regulator compare
IAI47_16080 -1.3 -4.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_00500 -1.3 -7.4 ATP-dependent DNA helicase RecG compare
IAI47_18705 -1.3 -6.8 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_11220 -1.3 -4.9 serine/threonine-protein phosphatase compare
IAI47_12565 -1.3 -8.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08345 -1.3 -7.0 flagellar type III secretion system protein FlhB compare
IAI47_17560 -1.3 -1.1 ROK family transcriptional regulator compare
IAI47_01825 -1.3 -6.2 two-component system sensor histidine kinase EnvZ compare
IAI47_21610 -1.2 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_18580 -1.2 -7.9 insulinase family protein compare
IAI47_09435 -1.2 -5.7 GtrA family protein compare
IAI47_07985 -1.2 -4.1 flagellar biosynthetic protein FliO compare
IAI47_04435 -1.2 -8.1 ATP-dependent chaperone ClpB compare
IAI47_12135 -1.2 -6.8 flagellar basal body L-ring protein FlgH compare
IAI47_12865 -1.2 -6.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_10520 -1.2 -2.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_02900 -1.2 -4.7 transcriptional regulator ExuR compare
IAI47_19030 -1.2 -2.9 hypothetical protein compare
IAI47_11685 -1.2 -5.9 DotU family type VI secretion system protein compare
IAI47_16840 -1.2 -4.9 carbamate kinase compare
IAI47_10345 -1.2 -6.6 YdgA family protein compare
IAI47_00775 -1.2 -6.8 CDF family cation-efflux transporter FieF compare
IAI47_11520 -1.2 -2.5 type VI secretion system tip protein VgrG compare
IAI47_06235 -1.2 -4.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00760 -1.2 -2.4 envelope stress response regulator transcription factor CpxR compare
IAI47_08815 -1.1 -2.8 hypothetical protein compare
IAI47_02750 -1.1 -7.8 class 1 fructose-bisphosphatase compare
IAI47_07135 -1.1 -4.4 DeoR/GlpR transcriptional regulator compare
IAI47_08010 -1.1 -4.2 flagella biosynthesis chaperone FliJ compare
IAI47_14590 -1.1 -7.3 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_18830 -1.1 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00835 -1.1 -2.8 cell division protein ZapB compare
IAI47_18530 -1.1 -1.8 thioredoxin TrxA compare
IAI47_09325 -1.1 -6.8 FdhF/YdeP family oxidoreductase compare
IAI47_07970 -1.1 -4.8 flagellar type III secretion system protein FliR compare
IAI47_15645 -1.1 -4.6 polynucleotide adenylyltransferase PcnB compare
IAI47_14660 -1.1 -4.7 trigger factor compare
IAI47_06910 -1.1 -3.1 dCTP deaminase compare
IAI47_14595 -1.1 -5.7 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_17020 -1.1 -1.8 30S ribosome-binding factor RbfA compare
IAI47_00120 -1.1 -3.8 sugar kinase compare
IAI47_00465 -1.1 -1.7 ribosome-dependent GTPase TypA compare
IAI47_08005 -1.1 -4.2 flagellar hook-length control protein FliK compare
IAI47_11930 -1.1 -2.4 two-component system response regulator PhoP compare
IAI47_08015 -1.1 -4.7 flagellum-specific ATP synthase FliI compare
IAI47_10825 -1.1 -1.0 tRNA-Val compare
IAI47_11450 -1.1 -3.5 ankyrin repeat domain-containing protein compare
IAI47_10470 -1.1 -1.2 electron transport complex subunit E compare
IAI47_14690 -1.0 -3.3 cytochrome o ubiquinol oxidase subunit III compare


Specific Phenotypes

For 16 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms