Experiment set8S12 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.1 -4.4 Tol-Pal system protein TolB compare
IAI47_15635 -5.9 -4.1 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.0 -14.8 carboxy terminal-processing peptidase compare
IAI47_05090 -5.0 -3.4 hypothetical protein compare
IAI47_09040 -4.9 -2.6 NAD-dependent epimerase compare
IAI47_09580 -4.7 -4.5 FNR family transcription factor compare
IAI47_13695 -3.9 -1.2 colicin uptake protein TolR compare
IAI47_05070 -3.7 -1.1 outer membrane protein assembly factor BamB compare
IAI47_08085 -3.6 -6.8 helix-turn-helix domain-containing protein compare
IAI47_13690 -3.4 -1.1 cell envelope integrity protein TolA compare
IAI47_18055 -3.4 -6.3 DNA-binding protein HU-alpha compare
IAI47_00655 -3.4 -5.6 glycosyltransferase family 4 protein compare
IAI47_05195 -3.4 -3.2 DnaA inactivator Hda compare
IAI47_13700 -3.3 -5.0 Tol-Pal system protein TolQ compare
IAI47_14470 -3.2 -3.6 YbaB/EbfC family nucleoid-associated protein compare
IAI47_11760 -3.0 -2.0 TonB-dependent siderophore receptor compare
IAI47_06325 -2.9 -6.8 acetate kinase compare
IAI47_08700 -2.9 -7.1 RNA chaperone ProQ compare
IAI47_17965 -2.9 -14.0 glucose-6-phosphate isomerase compare
IAI47_09055 -2.9 -14.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_12885 -2.8 -9.6 pyruvate formate lyase 1-activating protein compare
IAI47_00300 -2.8 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00870 -2.8 -1.2 50S ribosomal protein L31 compare
IAI47_12880 -2.8 -15.8 formate C-acetyltransferase compare
IAI47_17560 -2.7 -1.7 ROK family transcriptional regulator compare
IAI47_18830 -2.7 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_15485 -2.7 -1.4 molecular chaperone Skp compare
IAI47_00780 -2.7 -2.6 6-phosphofructokinase compare
IAI47_12930 -2.6 -4.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_15600 -2.6 -3.0 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_13885 -2.5 -2.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_12645 -2.5 -4.7 porin OmpA compare
IAI47_06135 -2.4 -4.6 phosphohistidine phosphatase SixA compare
IAI47_17005 -2.4 -5.2 polyribonucleotide nucleotidyltransferase compare
IAI47_05520 -2.4 -1.4 tRNA-Ala compare
IAI47_17000 -2.4 -10.6 lipoprotein NlpI compare
IAI47_18400 -2.4 -2.8 tyrosine recombinase XerC compare
IAI47_04300 -2.4 -6.6 recombinase RecA compare
IAI47_18480 -2.4 -9.0 lipid III flippase WzxE compare
IAI47_15595 -2.3 -2.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_06320 -2.3 -8.3 phosphate acetyltransferase compare
IAI47_16995 -2.3 -2.8 protein YrbN compare
IAI47_14730 -2.2 -1.3 exodeoxyribonuclease VII small subunit compare
IAI47_09360 -2.2 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_17020 -2.2 -4.1 30S ribosome-binding factor RbfA compare
IAI47_10840 -2.1 -3.8 pyruvate kinase PykF compare
IAI47_00925 -2.1 -2.8 hypothetical protein compare
IAI47_00940 -2.1 -8.6 HTH-type transcriptional repressor FabR compare
IAI47_11450 -2.1 -6.4 ankyrin repeat domain-containing protein compare
IAI47_07010 -2.0 -3.5 ABC transporter permease compare
IAI47_11310 -2.0 -3.6 redox-regulated ATPase YchF compare
IAI47_02380 -1.9 -2.2 DNA-binding transcriptional regulator Fis compare
IAI47_07015 -1.9 -5.9 ABC transporter ATP-binding protein compare
IAI47_00770 -1.9 -0.8 general stress protein compare
IAI47_13925 -1.9 -1.5 tRNA-Met compare
IAI47_18470 -1.9 -9.3 ECA oligosaccharide polymerase compare
IAI47_13720 -1.9 -3.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_21880 -1.8 -0.8 ParA family protein compare
IAI47_16520 -1.8 -9.1 hypothetical protein compare
IAI47_00760 -1.8 -3.4 envelope stress response regulator transcription factor CpxR compare
IAI47_06400 -1.8 -2.4 NADH-quinone oxidoreductase subunit J compare
IAI47_14020 -1.8 -4.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_08450 -1.8 -3.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06455 -1.7 -5.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_17215 -1.7 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_04835 -1.7 -7.2 ATP-dependent RNA helicase SrmB compare
IAI47_03375 -1.7 -8.1 peptide chain release factor 3 compare
IAI47_21450 -1.7 -1.2 general stress protein compare
IAI47_07885 -1.7 -1.1 tRNA-Asn compare
IAI47_19035 -1.6 -2.0 transcriptional regulator compare
IAI47_01750 -1.6 -5.5 glycerol-3-phosphate dehydrogenase compare
IAI47_02400 -1.6 -1.7 YhdT family protein compare
IAI47_10835 -1.6 -0.8 tRNA-Val compare
IAI47_00875 -1.6 -1.5 met regulon transcriptional regulator MetJ compare
IAI47_05580 -1.6 -1.1 membrane protein YpdK compare
IAI47_13195 -1.6 -6.5 DNA starvation/stationary phase protection protein Dps compare
IAI47_02515 -1.6 -4.7 transcriptional regulator ArgR compare
IAI47_00930 -1.5 -6.6 DNA-binding transcriptional regulator OxyR compare
IAI47_06245 -1.5 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_00505 -1.5 -5.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07165 -1.5 -1.9 exodeoxyribonuclease I compare
IAI47_17155 -1.5 -7.7 calcium/sodium antiporter compare
IAI47_00110 -1.5 -4.9 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_10925 -1.5 -3.1 EAL domain-containing protein compare
IAI47_02090 -1.5 -3.7 elongation factor Tu compare
IAI47_06910 -1.5 -3.9 dCTP deaminase compare
IAI47_03820 -1.5 -3.0 site-specific tyrosine recombinase XerD compare
IAI47_05425 -1.5 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_05420 -1.4 -1.0 PTS glucose transporter subunit IIA compare
IAI47_03240 -1.4 -3.3 TonB system transport protein ExbD compare
IAI47_17385 -1.4 -2.7 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_08165 -1.4 -5.3 flagella biosynthesis regulatory protein FliZ compare
IAI47_04425 -1.4 -6.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_00430 -1.4 -9.3 DNA polymerase I compare
IAI47_00675 -1.4 -9.5 glycosyltransferase family 9 protein compare
IAI47_00460 -1.4 -1.6 glutamate--ammonia ligase compare
IAI47_07350 -1.4 -0.8 hypothetical protein compare
IAI47_04400 -1.4 -5.2 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_05155 -1.4 -9.2 polyphosphate kinase 1 compare
IAI47_20850 -1.4 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_03235 -1.4 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_18410 -1.3 -2.7 diaminopimelate epimerase compare
IAI47_17235 -1.3 -7.0 stringent starvation protein A compare
IAI47_18145 -1.3 -2.1 elongation factor Tu compare
IAI47_09790 -1.3 -2.1 DUF1161 domain-containing protein compare
IAI47_00840 -1.3 -3.3 ribonuclease E activity regulator RraA compare
IAI47_18840 -1.3 -2.3 membrane protein insertion efficiency factor YidD compare
IAI47_13390 -1.3 -7.4 mechanosensitive ion channel family protein compare
IAI47_03680 -1.3 -7.5 transketolase compare
IAI47_18520 -1.3 -8.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13840 -1.3 -2.5 replication initiation negative regulator SeqA compare
IAI47_05050 -1.3 -3.8 cytoskeleton protein RodZ compare
IAI47_03135 -1.3 -3.9 outer membrane channel protein TolC compare
IAI47_08335 -1.2 -3.5 chemotaxis response regulator CheY compare
IAI47_13950 -1.2 -1.1 PhoH family protein compare
IAI47_00515 -1.2 -1.2 DNA-directed RNA polymerase subunit omega compare
IAI47_06065 -1.2 -3.4 cytochrome c biogenesis heme-transporting ATPase CcmA compare
IAI47_00835 -1.2 -2.6 cell division protein ZapB compare
IAI47_06980 -1.2 -2.4 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_03765 -1.2 -4.1 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_19295 -1.2 -2.3 hypothetical protein compare
IAI47_17255 -1.2 -1.6 DUF1043 family protein compare
IAI47_09310 -1.2 -3.1 YbdD/YjiX family protein compare
IAI47_02585 -1.2 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_10320 -1.2 -0.9 Rrf2 family transcriptional regulator compare
IAI47_13750 -1.2 -2.5 succinate dehydrogenase iron-sulfur subunit compare
IAI47_10845 -1.2 -2.1 major outer membrane lipoprotein compare
IAI47_11930 -1.2 -3.3 two-component system response regulator PhoP compare
IAI47_12280 -1.2 -7.0 glucan biosynthesis protein G compare
IAI47_02350 -1.1 -0.8 tRNA-Thr compare
IAI47_06965 -1.1 -1.3 glycosyltransferase family 2 protein compare
IAI47_00500 -1.1 -6.3 ATP-dependent DNA helicase RecG compare
IAI47_04450 -1.1 -1.5 tRNA-Ala compare
IAI47_08355 -1.1 -2.2 flagellar protein FlhE compare
IAI47_13765 -1.1 -1.8 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_01365 -1.1 -1.3 inorganic phosphate transporter PitA compare
IAI47_21180 -1.1 -2.8 IS6 family transposase compare
IAI47_09675 -1.1 -2.2 YoaK family small membrane protein compare
IAI47_13560 -1.1 -2.3 molybdate ABC transporter permease subunit compare
IAI47_03615 -1.1 -5.1 glutathione synthase compare
IAI47_04800 -1.1 -0.7 RnfH family protein compare
IAI47_12275 -1.1 -8.3 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_18490 -1.1 -3.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_00465 -1.1 -1.0 ribosome-dependent GTPase TypA compare
IAI47_01475 -1.1 -3.6 MurR/RpiR family transcriptional regulator compare
IAI47_13740 -1.1 -0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_01840 -1.1 -3.6 ribosome-associated heat shock protein Hsp15 compare
IAI47_08635 -1.1 -2.9 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_10790 -1.1 -2.6 YnhF family membrane protein compare
IAI47_08300 -1.1 -6.2 chemotaxis protein CheA compare
IAI47_16490 -1.1 -2.3 PTS sugar transporter subunit IIA compare
IAI47_15155 -1.0 -2.2 DUF943 family protein compare
IAI47_07020 -1.0 -0.9 hypothetical protein compare
IAI47_20650 -1.0 -3.7 polyprenyl synthetase family protein compare
IAI47_07250 -1.0 -1.9 tRNA-Asn compare
IAI47_16990 -1.0 -2.2 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_16190 -1.0 -3.2 molybdopterin adenylyltransferase compare
IAI47_07525 -1.0 -2.3 conjugal transfer protein TraD compare
IAI47_18705 -1.0 -5.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_17120 -1.0 -1.7 BolA family iron metabolism protein IbaG compare
IAI47_04895 -1.0 -2.2 pyridoxine 5'-phosphate synthase compare
IAI47_11375 -1.0 -0.9 hypothetical protein compare
IAI47_08325 -1.0 -4.3 protein-glutamate O-methyltransferase CheR compare
IAI47_13890 -1.0 -4.6 ROK family transcriptional regulator compare
IAI47_20415 -1.0 -4.9 two-component system response regulator DcuR compare
IAI47_05035 -1.0 -1.8 nucleoside-diphosphate kinase compare
IAI47_01625 -1.0 -2.0 GNAT family N-acetyltransferase compare
IAI47_07470 -1.0 -1.9 AlpA family transcriptional regulator compare
IAI47_13745 -1.0 -2.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_12925 -1.0 -2.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_13475 -1.0 -1.6 molybdopterin synthase catalytic subunit MoaE compare
IAI47_06900 -0.9 -1.6 phosphatase PAP2 family protein compare
IAI47_07905 -0.9 -0.7 Arc family DNA-binding protein compare
IAI47_11515 -0.9 -1.2 hypothetical protein compare
IAI47_03685 -0.9 -4.3 erythrose-4-phosphate dehydrogenase compare
IAI47_05015 -0.9 -4.5 enhanced serine sensitivity protein SseB compare
IAI47_12655 -0.9 -6.1 Lon protease family protein compare
IAI47_12865 -0.9 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_11675 -0.9 -3.7 type VI secretion system-associated protein TagF compare
IAI47_06475 -0.9 -2.9 transcriptional regulator RcsB compare
IAI47_13725 -0.9 -2.9 cytochrome ubiquinol oxidase subunit I compare
IAI47_13625 -0.9 -3.7 CDF family zinc transporter ZitB compare
IAI47_09455 -0.9 -3.1 murein tripeptide amidase MpaA compare
IAI47_02750 -0.9 -6.6 class 1 fructose-bisphosphatase compare
IAI47_02880 -0.9 -3.0 DUF883 domain-containing protein compare
IAI47_16055 -0.9 -6.1 RNA polymerase-associated protein RapA compare
IAI47_16925 -0.9 -5.7 anaerobic ribonucleoside-triphosphate reductase compare
IAI47_07360 -0.9 -1.5 hypothetical protein compare
IAI47_14075 -0.9 -1.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_14660 -0.9 -3.1 trigger factor compare
IAI47_09245 -0.9 -2.8 YmiA family putative membrane protein compare
IAI47_17035 -0.9 -1.8 ribosome maturation factor RimP compare
IAI47_09855 -0.9 -2.4 DUF2384 domain-containing protein compare
IAI47_18420 -0.9 -5.2 class I adenylate cyclase compare
IAI47_01005 -0.8 -5.5 DUF413 domain-containing protein compare
IAI47_13935 -0.8 -0.7 tRNA-Gln compare
IAI47_10050 -0.8 -1.7 hypothetical protein compare
IAI47_12650 -0.8 -3.5 macrodomain Ter protein MatP compare
IAI47_15810 -0.8 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_17285 -0.8 -1.2 entericidin A/B family lipoprotein compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms