Experiment set8S10 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -7.2 -4.3 Tol-Pal system protein TolB compare
IAI47_15635 -6.0 -4.0 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.5 -10.5 carboxy terminal-processing peptidase compare
IAI47_07010 -4.9 -3.0 ABC transporter permease compare
IAI47_13155 -4.5 -3.1 H-NS histone family protein compare
IAI47_10845 -4.5 -4.3 major outer membrane lipoprotein compare
IAI47_17000 -4.4 -15.5 lipoprotein NlpI compare
IAI47_18480 -4.4 -14.8 lipid III flippase WzxE compare
IAI47_08700 -4.2 -9.4 RNA chaperone ProQ compare
IAI47_13885 -4.2 -2.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_12790 -4.1 -1.2 chromosome partition protein MukE compare
IAI47_13720 -4.0 -5.5 cytochrome d ubiquinol oxidase subunit II compare
IAI47_18520 -4.0 -21.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13695 -3.9 -1.2 colicin uptake protein TolR compare
IAI47_07015 -3.9 -8.3 ABC transporter ATP-binding protein compare
IAI47_00655 -3.8 -5.3 glycosyltransferase family 4 protein compare
IAI47_08085 -3.8 -6.3 helix-turn-helix domain-containing protein compare
IAI47_13725 -3.7 -7.1 cytochrome ubiquinol oxidase subunit I compare
IAI47_12275 -3.7 -22.6 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_05070 -3.7 -1.1 outer membrane protein assembly factor BamB compare
IAI47_12925 -3.7 -4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_04705 -3.7 -1.9 hypothetical protein compare
IAI47_12645 -3.6 -6.4 porin OmpA compare
IAI47_17580 -3.6 -14.3 hypothetical protein compare
IAI47_18470 -3.5 -14.4 ECA oligosaccharide polymerase compare
IAI47_09040 -3.5 -2.1 NAD-dependent epimerase compare
IAI47_12280 -3.5 -16.3 glucan biosynthesis protein G compare
IAI47_09580 -3.4 -4.9 FNR family transcription factor compare
IAI47_12930 -3.4 -4.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05090 -3.4 -4.6 hypothetical protein compare
IAI47_10320 -3.4 -1.4 Rrf2 family transcriptional regulator compare
IAI47_07025 -3.4 -8.7 glycosyltransferase family 4 protein compare
IAI47_05155 -3.3 -19.1 polyphosphate kinase 1 compare
IAI47_18400 -3.2 -3.1 tyrosine recombinase XerC compare
IAI47_04865 -3.2 -2.6 SoxR-reducing system protein RseC compare
IAI47_06320 -3.2 -7.4 phosphate acetyltransferase compare
IAI47_06940 -3.2 -0.9 tyrosine-protein kinase Wzc compare
IAI47_05425 -3.1 -5.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_00930 -3.1 -12.7 DNA-binding transcriptional regulator OxyR compare
IAI47_00940 -3.1 -12.0 HTH-type transcriptional repressor FabR compare
IAI47_15600 -3.1 -3.4 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_13925 -3.1 -2.1 tRNA-Met compare
IAI47_06325 -3.1 -7.1 acetate kinase compare
IAI47_09235 -3.1 -2.3 type I DNA topoisomerase compare
IAI47_13700 -3.0 -4.9 Tol-Pal system protein TolQ compare
IAI47_03240 -2.9 -5.3 TonB system transport protein ExbD compare
IAI47_04505 -2.9 -10.6 transcriptional repressor MprA compare
IAI47_06455 -2.9 -6.5 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_14690 -2.9 -7.0 cytochrome o ubiquinol oxidase subunit III compare
IAI47_18055 -2.9 -8.2 DNA-binding protein HU-alpha compare
IAI47_00445 -2.8 -13.0 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_03820 -2.8 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_04800 -2.8 -1.2 RnfH family protein compare
IAI47_13765 -2.8 -2.7 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_00675 -2.8 -16.3 glycosyltransferase family 9 protein compare
IAI47_13890 -2.7 -9.7 ROK family transcriptional regulator compare
IAI47_17235 -2.7 -10.8 stringent starvation protein A compare
IAI47_00430 -2.7 -15.4 DNA polymerase I compare
IAI47_03645 -2.7 -15.6 O-antigen ligase family protein compare
IAI47_03640 -2.7 -14.5 glycosyltransferase compare
IAI47_18265 -2.7 -2.8 Sec-independent protein translocase subunit TatB compare
IAI47_08445 -2.6 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_16995 -2.6 -2.7 protein YrbN compare
IAI47_14470 -2.6 -3.4 YbaB/EbfC family nucleoid-associated protein compare
IAI47_03135 -2.6 -7.5 outer membrane channel protein TolC compare
IAI47_04300 -2.5 -6.9 recombinase RecA compare
IAI47_17965 -2.5 -12.3 glucose-6-phosphate isomerase compare
IAI47_06965 -2.5 -2.1 glycosyltransferase family 2 protein compare
IAI47_05050 -2.5 -5.9 cytoskeleton protein RodZ compare
IAI47_07030 -2.5 -6.9 HAD family hydrolase compare
IAI47_00670 -2.5 -16.1 sugar glycosyltransferase compare
IAI47_09100 -2.5 -11.1 cardiolipin synthase compare
IAI47_21595 -2.5 -9.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_14695 -2.5 -5.2 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_11760 -2.4 -2.1 TonB-dependent siderophore receptor compare
IAI47_09055 -2.4 -12.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_03375 -2.4 -9.4 peptide chain release factor 3 compare
IAI47_13745 -2.4 -4.7 2-oxoglutarate dehydrogenase E1 component compare
IAI47_14700 -2.3 -8.0 protoheme IX farnesyltransferase compare
IAI47_12885 -2.3 -9.0 pyruvate formate lyase 1-activating protein compare
IAI47_08450 -2.3 -3.8 Holliday junction branch migration DNA helicase RuvB compare
IAI47_01355 -2.3 -6.8 universal stress protein UspA compare
IAI47_12880 -2.3 -15.0 formate C-acetyltransferase compare
IAI47_01750 -2.2 -6.8 glycerol-3-phosphate dehydrogenase compare
IAI47_08440 -2.2 -1.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_03235 -2.2 -6.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_18830 -2.2 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_14685 -2.2 -10.8 cytochrome o ubiquinol oxidase subunit I compare
IAI47_07005 -2.2 -4.1 glycosyltransferase family 4 protein compare
IAI47_05420 -2.2 -1.4 PTS glucose transporter subunit IIA compare
IAI47_11930 -2.2 -5.3 two-component system response regulator PhoP compare
IAI47_02380 -2.1 -2.6 DNA-binding transcriptional regulator Fis compare
IAI47_10725 -2.1 -2.1 DUF1656 domain-containing protein compare
IAI47_21600 -2.1 -2.0 EamA family transporter compare
IAI47_13050 -2.1 -4.9 YbjN domain-containing protein compare
IAI47_15995 -2.1 -1.9 leu operon leader peptide compare
IAI47_00755 -2.1 -9.2 envelope stress sensor histidine kinase CpxA compare
IAI47_05195 -2.1 -2.7 DnaA inactivator Hda compare
IAI47_09305 -2.1 -3.3 cyclic di-GMP phosphodiesterase compare
IAI47_04895 -2.0 -4.2 pyridoxine 5'-phosphate synthase compare
IAI47_00290 -2.0 -4.2 F0F1 ATP synthase subunit I compare
IAI47_13405 -2.0 -5.6 DedA family protein compare
IAI47_13740 -2.0 -1.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_20595 -2.0 -5.2 GhoT/OrtT family toxin compare
IAI47_13390 -2.0 -10.0 mechanosensitive ion channel family protein compare
IAI47_09245 -2.0 -2.6 YmiA family putative membrane protein compare
IAI47_07180 -1.9 -8.0 DUF496 family protein compare
IAI47_11830 -1.9 -7.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_08035 -1.9 -1.6 flagellar hook-basal body complex protein FliE compare
IAI47_11450 -1.9 -6.5 ankyrin repeat domain-containing protein compare
IAI47_02350 -1.9 -1.1 tRNA-Thr compare
IAI47_07350 -1.9 -1.0 hypothetical protein compare
IAI47_19035 -1.9 -2.3 transcriptional regulator compare
IAI47_06450 -1.9 -4.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_14075 -1.9 -2.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_11610 -1.8 -8.3 serine/threonine-protein phosphatase compare
IAI47_08710 -1.8 -7.5 protease HtpX compare
IAI47_17155 -1.8 -8.4 calcium/sodium antiporter compare
IAI47_06245 -1.7 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_10790 -1.7 -4.3 YnhF family membrane protein compare
IAI47_08280 -1.7 -7.0 flagellar transcriptional regulator FlhD compare
IAI47_13950 -1.7 -1.5 PhoH family protein compare
IAI47_05535 -1.7 -7.8 Nramp family divalent metal transporter compare
IAI47_00780 -1.7 -3.2 6-phosphofructokinase compare
IAI47_13415 -1.7 -7.5 L,D-transpeptidase family protein compare
IAI47_12125 -1.7 -6.9 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_00110 -1.6 -6.4 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_07000 -1.6 -7.0 UDP-glucose 4-epimerase GalE compare
IAI47_14680 -1.6 -5.5 cytochrome o ubiquinol oxidase subunit II compare
IAI47_13475 -1.6 -3.1 molybdopterin synthase catalytic subunit MoaE compare
IAI47_07975 -1.6 -5.6 flagellar biosynthesis protein FliQ compare
IAI47_15485 -1.6 -1.1 molecular chaperone Skp compare
IAI47_14730 -1.6 -1.1 exodeoxyribonuclease VII small subunit compare
IAI47_16405 -1.6 -4.0 siderophore-iron reductase FhuF compare
IAI47_17005 -1.5 -5.8 polyribonucleotide nucleotidyltransferase compare
IAI47_02400 -1.5 -1.5 YhdT family protein compare
IAI47_07980 -1.5 -5.9 flagellar type III secretion system pore protein FliP compare
IAI47_02750 -1.5 -10.8 class 1 fructose-bisphosphatase compare
IAI47_13850 -1.5 -3.4 LexA regulated protein compare
IAI47_18490 -1.5 -2.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_21830 -1.5 -1.6 hypothetical protein compare
IAI47_15725 -1.5 -4.4 DeoR/GlpR transcriptional regulator compare
IAI47_09750 -1.5 -6.6 ROK family transcriptional regulator compare
IAI47_07135 -1.5 -5.0 DeoR/GlpR transcriptional regulator compare
IAI47_18410 -1.5 -3.5 diaminopimelate epimerase compare
IAI47_09320 -1.5 -7.5 exoribonuclease II compare
IAI47_07970 -1.5 -6.9 flagellar type III secretion system protein FliR compare
IAI47_06120 -1.5 -3.1 YfcZ/YiiS family protein compare
IAI47_11420 -1.4 -2.0 hypothetical protein compare
IAI47_11935 -1.4 -8.2 two-component system sensor histidine kinase PhoQ compare
IAI47_03400 -1.4 -6.1 deoxyribose-phosphate aldolase compare
IAI47_06235 -1.4 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_14705 -1.4 -6.9 MFS transporter compare
IAI47_08020 -1.4 -4.8 flagellar assembly protein FliH compare
IAI47_18710 -1.4 -5.9 MltR family transcriptional regulator compare
IAI47_02090 -1.4 -3.6 elongation factor Tu compare
IAI47_02515 -1.4 -4.6 transcriptional regulator ArgR compare
IAI47_15155 -1.4 -2.8 DUF943 family protein compare
IAI47_09360 -1.4 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_17215 -1.4 -0.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_11995 -1.4 -4.3 beta-N-acetylhexosaminidase compare
IAI47_08815 -1.4 -3.1 hypothetical protein compare
IAI47_12105 -1.4 -5.7 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_12160 -1.3 -5.8 flagellar basal body rod protein FlgC compare
IAI47_13480 -1.3 -1.8 molybdopterin synthase sulfur carrier subunit compare
IAI47_08005 -1.3 -5.2 flagellar hook-length control protein FliK compare
IAI47_08010 -1.3 -4.3 flagella biosynthesis chaperone FliJ compare
IAI47_17020 -1.3 -2.5 30S ribosome-binding factor RbfA compare
IAI47_18705 -1.3 -7.9 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08850 -1.3 -3.8 septum site-determining protein MinD compare
IAI47_08345 -1.3 -7.9 flagellar type III secretion system protein FlhB compare
IAI47_01650 -1.3 -6.6 gluconate operon transcriptional repressor GntR compare
IAI47_10840 -1.3 -3.5 pyruvate kinase PykF compare
IAI47_08335 -1.3 -4.8 chemotaxis response regulator CheY compare
IAI47_03805 -1.3 -4.3 FAD assembly factor SdhE compare
IAI47_08285 -1.3 -6.0 flagellar transcriptional regulator FlhC compare
IAI47_12470 -1.3 -7.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_12155 -1.3 -7.2 flagellar hook assembly protein FlgD compare
IAI47_00300 -1.3 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_15345 -1.2 -9.0 murein transglycosylase D compare
IAI47_12565 -1.2 -7.5 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08025 -1.2 -4.9 flagellar motor switch protein FliG compare
IAI47_09435 -1.2 -5.4 GtrA family protein compare
IAI47_19780 -1.2 -4.5 TetR/AcrR family transcriptional regulator compare
IAI47_12135 -1.2 -6.9 flagellar basal body L-ring protein FlgH compare
IAI47_16080 -1.2 -4.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_05080 -1.2 -4.0 zinc ribbon domain-containing protein compare
IAI47_12625 -1.2 -5.4 YccF domain-containing protein compare
IAI47_21610 -1.2 -6.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_02900 -1.2 -4.2 transcriptional regulator ExuR compare
IAI47_12130 -1.2 -6.7 flagellar basal body P-ring protein FlgI compare
IAI47_12165 -1.2 -4.5 flagellar basal body rod protein FlgB compare
IAI47_16410 -1.2 -2.9 YbaK/EbsC family protein compare
IAI47_13495 -1.2 -3.6 GTP 3',8-cyclase MoaA compare
IAI47_16840 -1.2 -4.4 carbamate kinase compare
IAI47_04235 -1.2 -7.3 RNA polymerase sigma factor RpoS compare
IAI47_06135 -1.2 -3.0 phosphohistidine phosphatase SixA compare
IAI47_21605 -1.1 -7.3 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_09495 -1.1 -5.3 2-hydroxyacid dehydrogenase compare
IAI47_14595 -1.1 -5.8 SmdA family multidrug ABC transporter permease/ATP-binding protein compare


Specific Phenotypes

For 13 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms