Experiment set8S10 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Group: survival
Media: + Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Culturing: MT058_ML2, tube, Aerobic
By: Mike Thorgersen on 6/27/23

Specific Phenotypes

For 13 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms

SEED Subsystems

Subsystem #Specific
Deoxyribose and Deoxynucleoside Catabolism 1
Fermentations: Lactate 1
Fermentations: Mixed acid 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1
Mannitol Utilization 1
Nitrosative stress 1
Oxidative stress 1
RNA processing and degradation, bacterial 1
Ribosome biogenesis bacterial 1
Rrf2 family transcriptional regulators 1
Transport of Manganese 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pyruvate fermentation to (R)-lactate 1 1 1
pseudouridine degradation 2 1 1
L-alanine degradation II (to D-lactate) 3 3 1
2-deoxy-α-D-ribose 1-phosphate degradation 3 3 1
2-deoxy-D-ribose degradation I 3 3 1
vancomycin resistance I 3 2 1
tRNA processing 10 10 2
superpathway of pyrimidine deoxyribonucleosides degradation 6 6 1
L-alanine degradation VI (reductive Stickland reaction) 6 2 1
superpathway of purine deoxyribonucleosides degradation 7 7 1
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales) 8 4 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 7 1
superpathway of L-alanine fermentation (Stickland reaction) 9 4 1
mixed acid fermentation 16 14 1
superpathway of glucose and xylose degradation 17 16 1
heterolactic fermentation 18 16 1