Experiment set8S1 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -5.9 -3.8 RNA polymerase-binding protein DksA compare
IAI47_08705 -5.2 -13.5 carboxy terminal-processing peptidase compare
IAI47_09040 -4.8 -2.4 NAD-dependent epimerase compare
IAI47_04800 -4.6 -1.3 RnfH family protein compare
IAI47_13700 -4.6 -4.5 Tol-Pal system protein TolQ compare
IAI47_21655 -4.4 -1.3 LacI family DNA-binding transcriptional regulator compare
IAI47_18480 -4.3 -15.6 lipid III flippase WzxE compare
IAI47_09580 -4.2 -5.0 FNR family transcription factor compare
IAI47_08700 -4.1 -10.0 RNA chaperone ProQ compare
IAI47_09235 -4.1 -2.3 type I DNA topoisomerase compare
IAI47_12790 -4.1 -1.2 chromosome partition protein MukE compare
IAI47_12280 -4.0 -15.4 glucan biosynthesis protein G compare
IAI47_17000 -4.0 -16.3 lipoprotein NlpI compare
IAI47_18055 -4.0 -8.9 DNA-binding protein HU-alpha compare
IAI47_13695 -3.9 -1.1 colicin uptake protein TolR compare
IAI47_13685 -3.9 -2.6 Tol-Pal system protein TolB compare
IAI47_08085 -3.8 -6.4 helix-turn-helix domain-containing protein compare
IAI47_00770 -3.8 -1.1 general stress protein compare
IAI47_18520 -3.8 -20.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12275 -3.8 -22.5 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_14075 -3.8 -3.6 transcription antiterminator/RNA stability regulator CspE compare
IAI47_05070 -3.7 -1.1 outer membrane protein assembly factor BamB compare
IAI47_10845 -3.7 -5.1 major outer membrane lipoprotein compare
IAI47_08845 -3.7 -2.5 cell division topological specificity factor MinE compare
IAI47_18400 -3.6 -2.5 tyrosine recombinase XerC compare
IAI47_13720 -3.6 -6.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_04705 -3.6 -1.7 hypothetical protein compare
IAI47_12925 -3.6 -4.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_12645 -3.5 -6.2 porin OmpA compare
IAI47_13690 -3.4 -1.0 cell envelope integrity protein TolA compare
IAI47_10320 -3.4 -1.4 Rrf2 family transcriptional regulator compare
IAI47_12930 -3.4 -4.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_18470 -3.3 -15.1 ECA oligosaccharide polymerase compare
IAI47_05420 -3.3 -1.6 PTS glucose transporter subunit IIA compare
IAI47_05155 -3.2 -19.2 polyphosphate kinase 1 compare
IAI47_13885 -3.1 -2.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_15595 -3.1 -2.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_07030 -3.1 -6.0 HAD family hydrolase compare
IAI47_13405 -3.1 -9.8 DedA family protein compare
IAI47_18490 -3.1 -5.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_10520 -3.1 -3.6 pyridoxamine 5'-phosphate oxidase compare
IAI47_00655 -3.0 -5.1 glycosyltransferase family 4 protein compare
IAI47_16390 -3.0 -0.8 tRNA-Leu compare
IAI47_04300 -2.9 -5.9 recombinase RecA compare
IAI47_06320 -2.9 -9.2 phosphate acetyltransferase compare
IAI47_05090 -2.8 -4.2 hypothetical protein compare
IAI47_05425 -2.8 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13415 -2.8 -11.4 L,D-transpeptidase family protein compare
IAI47_00870 -2.8 -1.1 50S ribosomal protein L31 compare
IAI47_00300 -2.8 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_15485 -2.7 -1.3 molecular chaperone Skp compare
IAI47_03240 -2.7 -5.1 TonB system transport protein ExbD compare
IAI47_06325 -2.6 -7.6 acetate kinase compare
IAI47_07025 -2.6 -5.7 glycosyltransferase family 4 protein compare
IAI47_03640 -2.5 -12.7 glycosyltransferase compare
IAI47_03645 -2.5 -13.1 O-antigen ligase family protein compare
IAI47_05520 -2.5 -1.4 tRNA-Ala compare
IAI47_17235 -2.5 -10.1 stringent starvation protein A compare
IAI47_00930 -2.5 -9.6 DNA-binding transcriptional regulator OxyR compare
IAI47_07015 -2.4 -5.7 ABC transporter ATP-binding protein compare
IAI47_00670 -2.4 -15.3 sugar glycosyltransferase compare
IAI47_13740 -2.4 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_16085 -2.4 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_07010 -2.4 -3.5 ABC transporter permease compare
IAI47_10470 -2.3 -2.3 electron transport complex subunit E compare
IAI47_13050 -2.3 -4.6 YbjN domain-containing protein compare
IAI47_11515 -2.3 -2.0 hypothetical protein compare
IAI47_00675 -2.3 -12.7 glycosyltransferase family 9 protein compare
IAI47_12880 -2.3 -14.8 formate C-acetyltransferase compare
IAI47_03375 -2.2 -9.3 peptide chain release factor 3 compare
IAI47_19050 -2.2 -3.4 hypothetical protein compare
IAI47_07005 -2.2 -5.3 glycosyltransferase family 4 protein compare
IAI47_08450 -2.2 -3.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_12865 -2.2 -9.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07970 -2.2 -7.2 flagellar type III secretion system protein FliR compare
IAI47_17020 -2.2 -4.0 30S ribosome-binding factor RbfA compare
IAI47_17910 -2.2 -3.0 chorismate lyase compare
IAI47_13725 -2.2 -4.5 cytochrome ubiquinol oxidase subunit I compare
IAI47_04505 -2.2 -8.1 transcriptional repressor MprA compare
IAI47_01750 -2.2 -6.0 glycerol-3-phosphate dehydrogenase compare
IAI47_00940 -2.2 -8.8 HTH-type transcriptional repressor FabR compare
IAI47_13155 -2.2 -2.2 H-NS histone family protein compare
IAI47_14700 -2.1 -7.5 protoheme IX farnesyltransferase compare
IAI47_09100 -2.1 -8.4 cardiolipin synthase compare
IAI47_09055 -2.1 -10.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06455 -2.1 -5.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_07980 -2.1 -6.7 flagellar type III secretion system pore protein FliP compare
IAI47_11930 -2.0 -3.7 two-component system response regulator PhoP compare
IAI47_09305 -2.0 -3.3 cyclic di-GMP phosphodiesterase compare
IAI47_00760 -2.0 -3.8 envelope stress response regulator transcription factor CpxR compare
IAI47_17580 -2.0 -7.7 hypothetical protein compare
IAI47_12885 -2.0 -7.5 pyruvate formate lyase 1-activating protein compare
IAI47_17005 -2.0 -6.1 polyribonucleotide nucleotidyltransferase compare
IAI47_07990 -2.0 -3.9 flagellar motor switch protein FliN compare
IAI47_15980 -2.0 -7.9 catabolite repressor/activator compare
IAI47_21665 -2.0 -1.5 DUF333 domain-containing protein compare
IAI47_11935 -1.9 -10.7 two-component system sensor histidine kinase PhoQ compare
IAI47_07000 -1.9 -7.0 UDP-glucose 4-epimerase GalE compare
IAI47_08280 -1.9 -7.6 flagellar transcriptional regulator FlhD compare
IAI47_03820 -1.9 -3.3 site-specific tyrosine recombinase XerD compare
IAI47_00445 -1.9 -8.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_17155 -1.9 -9.8 calcium/sodium antiporter compare
IAI47_18530 -1.8 -1.9 thioredoxin TrxA compare
IAI47_06245 -1.8 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03610 -1.8 -4.1 YqgE/AlgH family protein compare
IAI47_07180 -1.8 -6.5 DUF496 family protein compare
IAI47_21610 -1.8 -6.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_08285 -1.8 -7.4 flagellar transcriptional regulator FlhC compare
IAI47_12145 -1.8 -5.1 flagellar basal body rod protein FlgF compare
IAI47_15110 -1.7 -3.5 chromophore lyase compare
IAI47_21450 -1.7 -1.2 general stress protein compare
IAI47_00780 -1.7 -2.9 6-phosphofructokinase compare
IAI47_21830 -1.7 -1.8 hypothetical protein compare
IAI47_12155 -1.7 -7.9 flagellar hook assembly protein FlgD compare
IAI47_16080 -1.7 -5.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_03680 -1.7 -8.7 transketolase compare
IAI47_12125 -1.6 -6.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_03235 -1.6 -5.1 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_08710 -1.6 -5.8 protease HtpX compare
IAI47_04895 -1.6 -2.8 pyridoxine 5'-phosphate synthase compare
IAI47_10755 -1.6 -0.9 DUF1289 domain-containing protein compare
IAI47_00540 -1.6 -2.9 hypothetical protein compare
IAI47_11450 -1.6 -4.7 ankyrin repeat domain-containing protein compare
IAI47_16995 -1.6 -1.7 protein YrbN compare
IAI47_14640 -1.6 -3.9 DNA-binding protein HU-beta compare
IAI47_14685 -1.6 -8.8 cytochrome o ubiquinol oxidase subunit I compare
IAI47_14680 -1.6 -5.4 cytochrome o ubiquinol oxidase subunit II compare
IAI47_08855 -1.6 -3.9 septum site-determining protein MinC compare
IAI47_08445 -1.6 -1.0 Holliday junction branch migration protein RuvA compare
IAI47_02380 -1.6 -1.8 DNA-binding transcriptional regulator Fis compare
IAI47_07995 -1.6 -7.6 flagellar motor switch protein FliM compare
IAI47_00775 -1.5 -9.0 CDF family cation-efflux transporter FieF compare
IAI47_11830 -1.5 -6.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_00430 -1.5 -9.4 DNA polymerase I compare
IAI47_06980 -1.5 -2.7 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_13840 -1.5 -3.0 replication initiation negative regulator SeqA compare
IAI47_11610 -1.5 -4.6 serine/threonine-protein phosphatase compare
IAI47_10840 -1.5 -3.8 pyruvate kinase PykF compare
IAI47_02400 -1.5 -1.4 YhdT family protein compare
IAI47_08345 -1.5 -7.0 flagellar type III secretion system protein FlhB compare
IAI47_12565 -1.5 -7.6 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_12150 -1.5 -7.7 flagellar hook protein FlgE compare
IAI47_05325 -1.5 -2.0 DUF1471 domain-containing protein compare
IAI47_12130 -1.5 -7.9 flagellar basal body P-ring protein FlgI compare
IAI47_07165 -1.5 -2.1 exodeoxyribonuclease I compare
IAI47_21595 -1.5 -6.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_00290 -1.5 -3.3 F0F1 ATP synthase subunit I compare
IAI47_08020 -1.5 -4.3 flagellar assembly protein FliH compare
IAI47_08010 -1.5 -3.9 flagella biosynthesis chaperone FliJ compare
IAI47_16190 -1.4 -4.3 molybdopterin adenylyltransferase compare
IAI47_00755 -1.4 -5.4 envelope stress sensor histidine kinase CpxA compare
IAI47_16055 -1.4 -8.8 RNA polymerase-associated protein RapA compare
IAI47_17965 -1.4 -7.8 glucose-6-phosphate isomerase compare
IAI47_07480 -1.4 -1.8 hypothetical protein compare
IAI47_00110 -1.4 -4.8 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_14690 -1.4 -4.8 cytochrome o ubiquinol oxidase subunit III compare
IAI47_11210 -1.4 -7.0 type VI secretion system-associated protein TagF compare
IAI47_05195 -1.4 -1.8 DnaA inactivator Hda compare
IAI47_00330 -1.4 -8.5 low affinity potassium transporter Kup compare
IAI47_12140 -1.4 -5.3 flagellar basal-body rod protein FlgG compare
IAI47_07985 -1.4 -4.4 flagellar biosynthetic protein FliO compare
IAI47_11685 -1.4 -5.7 DotU family type VI secretion system protein compare
IAI47_06450 -1.4 -3.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_14695 -1.4 -3.5 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_05535 -1.3 -7.1 Nramp family divalent metal transporter compare
IAI47_14960 -1.3 -2.5 anti-adapter protein IraP compare
IAI47_13890 -1.3 -5.0 ROK family transcriptional regulator compare
IAI47_18830 -1.3 -1.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_18485 -1.3 -7.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_15725 -1.3 -3.4 DeoR/GlpR transcriptional regulator compare
IAI47_07975 -1.3 -3.6 flagellar biosynthesis protein FliQ compare
IAI47_11220 -1.3 -3.8 serine/threonine-protein phosphatase compare
IAI47_13850 -1.3 -2.6 LexA regulated protein compare
IAI47_21600 -1.3 -1.6 EamA family transporter compare
IAI47_09415 -1.3 -6.3 YcjX family protein compare
IAI47_10255 -1.3 -2.7 isochorismatase family protein compare
IAI47_08350 -1.3 -5.9 flagellar biosynthesis protein FlhA compare
IAI47_01355 -1.3 -4.1 universal stress protein UspA compare
IAI47_08030 -1.3 -7.4 flagellar M-ring protein FliF compare
IAI47_09320 -1.3 -6.8 exoribonuclease II compare
IAI47_08005 -1.3 -4.9 flagellar hook-length control protein FliK compare
IAI47_11760 -1.3 -1.3 TonB-dependent siderophore receptor compare
IAI47_06655 -1.3 -2.4 1-phosphofructokinase compare
IAI47_05035 -1.3 -1.7 nucleoside-diphosphate kinase compare
IAI47_12160 -1.3 -5.7 flagellar basal body rod protein FlgC compare
IAI47_08025 -1.3 -4.5 flagellar motor switch protein FliG compare
IAI47_21605 -1.2 -7.2 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_03770 -1.2 -5.3 glycine cleavage system protein GcvH compare
IAI47_02750 -1.2 -8.3 class 1 fructose-bisphosphatase compare
IAI47_17120 -1.2 -1.9 BolA family iron metabolism protein IbaG compare
IAI47_04865 -1.2 -1.0 SoxR-reducing system protein RseC compare
IAI47_08160 -1.2 -4.9 RNA polymerase sigma factor FliA compare
IAI47_11995 -1.2 -3.5 beta-N-acetylhexosaminidase compare
IAI47_18580 -1.2 -7.5 insulinase family protein compare
IAI47_16520 -1.2 -4.1 hypothetical protein compare
IAI47_18215 -1.2 -0.7 Trk system potassium transporter TrkH compare
IAI47_06480 -1.2 -5.8 phosphotransferase RcsD compare
IAI47_18705 -1.2 -5.8 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_03490 -1.2 -2.1 hypothetical protein compare
IAI47_15345 -1.2 -8.0 murein transglycosylase D compare


Specific Phenotypes

For 8 genes in this experiment

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms