Experiment set8IT096 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27365 -5.9 -8.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20575 -5.5 -7.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28390 -5.4 -13.9 methionine biosynthesis protein MetW compare
PFLU_RS20540 -5.3 -12.9 phosphoribosylanthranilate isomerase compare
PFLU_RS01620 -5.3 -10.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28535 -5.3 -19.5 dihydroxy-acid dehydratase compare
PFLU_RS25640 -5.1 -15.5 ketol-acid reductoisomerase compare
PFLU_RS01625 -5.1 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28385 -5.1 -18.6 homoserine O-acetyltransferase compare
PFLU_RS20565 -5.1 -15.7 3-isopropylmalate dehydrogenase compare
PFLU_RS02490 -4.9 -17.2 phosphoserine phosphatase SerB compare
PFLU_RS20580 -4.9 -15.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01605 -4.9 -12.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01610 -4.8 -16.0 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24765 -4.8 -26.4 2-isopropylmalate synthase compare
PFLU_RS29875 -4.8 -18.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS00180 -4.6 -11.6 tryptophan synthase subunit beta compare
PFLU_RS00175 -4.6 -13.7 tryptophan synthase subunit alpha compare
PFLU_RS25645 -4.6 -4.5 acetolactate synthase small subunit compare
PFLU_RS20510 -4.6 -17.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28695 -4.6 -9.4 phosphoglycerate dehydrogenase compare
PFLU_RS28165 -4.6 -17.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28655 -4.5 -18.7 HAD family hydrolase compare
PFLU_RS01900 -4.5 -12.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS09055 -4.3 -7.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS27370 -4.3 -16.7 anthranilate phosphoribosyltransferase compare
PFLU_RS25735 -4.2 -11.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29880 -4.2 -17.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS20515 -4.2 -8.4 amidophosphoribosyltransferase compare
PFLU_RS29885 -4.1 -14.6 LysR family transcriptional regulator compare
PFLU_RS22740 -4.0 -6.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS04470 -3.8 -16.6 histidinol dehydrogenase compare
PFLU_RS12980 -3.8 -12.7 nitrite/sulfite reductase compare
PFLU_RS12975 -3.7 -6.7 DUF934 domain-containing protein compare
PFLU_RS18505 -3.7 -14.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01895 -3.6 -8.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS04465 -3.5 -10.9 ATP phosphoribosyltransferase compare
PFLU_RS13540 -3.4 -8.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25360 -3.4 -9.1 glutamate 5-kinase compare
PFLU_RS02275 -3.3 -2.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS29515 -3.2 -12.8 RidA family protein compare
PFLU_RS22630 -3.2 -20.1 phosphoenolpyruvate synthase compare
PFLU_RS22070 -3.1 -7.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS02590 -3.1 -10.8 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS22105 -3.1 -7.4 cysteine synthase CysM compare
PFLU_RS23305 -3.0 -13.6 arginine N-succinyltransferase compare
PFLU_RS23070 -2.9 -2.5 50S ribosomal protein L32 compare
PFLU_RS23310 -2.8 -12.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23065 -2.7 -12.0 phosphate acyltransferase PlsX compare
PFLU_RS05690 -2.6 -3.5 Grx4 family monothiol glutaredoxin compare
PFLU_RS22595 -2.5 -6.0 OmpA family protein compare
PFLU_RS25585 -2.5 -4.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS08990 -2.3 -3.6 hypothetical protein compare
PFLU_RS02050 -2.1 -13.8 NAD(P)-binding protein compare
PFLU_RS07665 -2.0 -3.6 type I DNA topoisomerase compare
PFLU_RS18585 -2.0 -1.1 high frequency lysogenization protein HflD compare
PFLU_RS04140 -2.0 -4.3 response regulator transcription factor compare
PFLU_RS13895 -1.9 -2.7 helix-turn-helix transcriptional regulator compare
PFLU_RS25955 -1.9 -3.3 hypothetical protein compare
PFLU_RS02565 -1.8 -8.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS24125 -1.8 -6.8 cold-shock protein compare
PFLU_RS02045 -1.7 -14.3 glutamate synthase large subunit compare
PFLU_RS25945 -1.7 -10.4 L-lactate permease conserved
PFLU_RS28665 -1.6 -11.7 threonine ammonia-lyase, biosynthetic compare
PFLU_RS25595 -1.6 -3.3 exodeoxyribonuclease V subunit gamma compare
PFLU_RS06055 -1.6 -1.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04220 -1.6 -7.6 FadR family transcriptional regulator compare
PFLU_RS29095 -1.6 -13.3 polyphosphate kinase 1 compare
PFLU_RS25740 -1.6 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28315 -1.6 -1.8 response regulator compare
PFLU_RS01875 -1.5 -1.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS27380 -1.5 -8.1 anthranilate synthase component I compare
PFLU_RS24085 -1.4 -4.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS02760 -1.4 -6.5 N-acylglucosamine 2-epimerase compare
PFLU_RS24160 -1.4 -7.2 HAMP domain-containing protein compare
PFLU_RS01685 -1.4 -4.8 nitrogen regulation protein NR(I) compare
PFLU_RS08410 -1.4 -5.5 HTH-type transcriptional regulator CysB compare
PFLU_RS17950 -1.4 -2.0 hypothetical protein compare
PFLU_RS21360 -1.4 -1.3 MarR family transcriptional regulator compare
PFLU_RS25730 -1.3 -9.3 PAS domain S-box protein compare
PFLU_RS01320 -1.3 -7.3 phosphoenolpyruvate carboxykinase compare
PFLU_RS05885 -1.3 -5.4 recombinase RecA compare
PFLU_RS03555 -1.3 -1.2 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS21740 -1.3 -5.1 Hpt domain-containing protein compare
PFLU_RS27375 -1.3 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS25210 -1.3 -4.9 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS31215 -1.2 -3.2 hypothetical protein compare
PFLU_RS21215 -1.2 -1.7 YheU family protein compare
PFLU_RS27580 -1.2 -3.0 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS01765 -1.2 -6.2 histidine utilization repressor compare
PFLU_RS11525 -1.2 -4.2 GntR family transcriptional regulator compare
PFLU_RS25215 -1.2 -7.7 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS04475 -1.1 -7.6 histidinol-phosphate transaminase compare
PFLU_RS05910 -1.1 -2.0 response regulator transcription factor compare
PFLU_RS18530 -1.1 -3.3 DNA translocase FtsK compare
PFLU_RS30590 -1.1 -1.6 hypothetical protein compare
PFLU_RS24205 -1.1 -1.7 DNA binding protein compare
PFLU_RS22735 -1.1 -6.5 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS18755 -1.1 -5.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS24095 -1.1 -3.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS01390 -1.1 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS22520 -1.1 -2.2 GntR family transcriptional regulator compare
PFLU_RS08380 -1.1 -6.5 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS20730 -1.1 -1.1 hypothetical protein compare
PFLU_RS18700 -1.1 -2.3 hypothetical protein compare
PFLU_RS24825 -1.1 -2.9 Fe-S cluster assembly protein IscX compare
PFLU_RS03770 -1.1 -7.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04075 -1.1 -1.8 hypothetical protein compare
PFLU_RS20955 -1.1 -1.2 DUF1028 domain-containing protein compare
PFLU_RS28820 -1.0 -2.3 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS08125 -1.0 -2.9 integration host factor subunit beta compare
PFLU_RS27475 -1.0 -6.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS00070 -1.0 -1.6 tetratricopeptide repeat protein compare
PFLU_RS04565 -1.0 -0.9 TMEM165/GDT1 family protein compare
PFLU_RS05655 -1.0 -2.1 DeoR/GlpR family transcriptional regulator compare
PFLU_RS30165 -1.0 -5.6 ParA family protein compare
PFLU_RS18735 -1.0 -1.1 hypothetical protein compare
PFLU_RS02625 -1.0 -7.2 ribonuclease R compare
PFLU_RS22030 -1.0 -3.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS01910 -1.0 -1.5 sterol-binding protein compare
PFLU_RS15610 -1.0 -4.0 helix-turn-helix transcriptional regulator compare
PFLU_RS28965 -1.0 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24090 -1.0 -3.0 Holliday junction branch migration protein RuvA compare
PFLU_RS24860 -1.0 -1.8 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS02670 -0.9 -2.9 hypothetical protein compare
PFLU_RS27640 -0.9 -1.5 alpha/beta fold hydrolase compare
PFLU_RS24995 -0.9 -3.0 STAS domain-containing protein compare
PFLU_RS25875 -0.9 -3.6 transcription elongation factor GreA compare
PFLU_RS29400 -0.9 -1.9 DUF1127 domain-containing protein compare
PFLU_RS29550 -0.9 -5.3 ATP-dependent DNA helicase RecG compare
PFLU_RS29090 -0.9 -4.7 exopolyphosphatase compare
PFLU_RS17495 -0.9 -1.6 hypothetical protein compare
PFLU_RS18865 -0.9 -2.4 Na+/H+ antiporter subunit G compare
PFLU_RS00550 -0.9 -3.8 NAD(P) transhydrogenase subunit alpha compare
PFLU_RS00870 -0.9 -1.7 hypothetical protein compare
PFLU_RS25200 -0.9 -4.7 protoheme IX farnesyltransferase compare
PFLU_RS15515 -0.8 -2.1 hypothetical protein compare
PFLU_RS23380 -0.8 -1.7 HAD-IB family hydrolase compare
PFLU_RS27465 -0.8 -2.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS04165 -0.8 -4.5 cell division protein ZapE compare
PFLU_RS20715 -0.8 -1.7 iron ABC transporter permease compare
PFLU_RS23315 -0.8 -4.5 aspartate aminotransferase family protein compare
PFLU_RS28270 -0.8 -2.4 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS25950 -0.8 -5.7 FAD-binding oxidoreductase conserved
PFLU_RS28320 -0.8 -2.2 glutathione synthase compare
PFLU_RS02410 -0.8 -3.2 multidrug efflux SMR transporter compare
PFLU_RS17970 -0.8 -2.5 LysR family transcriptional regulator compare
PFLU_RS08535 -0.8 -5.5 response regulator compare
PFLU_RS25205 -0.8 -2.8 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS18940 -0.8 -5.0 acyl-CoA dehydrogenase compare
PFLU_RS17500 -0.8 -2.8 hypothetical protein compare
PFLU_RS04780 -0.8 -2.4 hypothetical protein compare
PFLU_RS10835 -0.8 -1.7 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS23295 -0.8 -4.1 N-succinylarginine dihydrolase compare
PFLU_RS31100 -0.7 -2.6 preprotein translocase subunit SecG compare
PFLU_RS22455 -0.7 -4.2 hypothetical protein compare
PFLU_RS21495 -0.7 -2.4 TlpA family protein disulfide reductase compare
PFLU_RS30160 -0.7 -1.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS21935 -0.7 -5.8 sensor histidine kinase compare
PFLU_RS18010 -0.7 -3.1 dihydrofolate reductase compare
PFLU_RS23895 -0.7 -1.6 DUF1289 domain-containing protein compare
PFLU_RS07910 -0.7 -1.0 type 1 fimbrial protein compare
PFLU_RS23045 -0.7 -4.1 beta-ketoacyl-ACP synthase II compare
PFLU_RS10330 -0.7 -2.7 adenylyl-sulfate kinase compare
PFLU_RS13035 -0.7 -2.1 cobalamin biosynthesis protein CobW compare
PFLU_RS21985 -0.7 -2.6 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS11415 -0.7 -1.5 protein glxC compare
PFLU_RS05020 -0.7 -1.4 DUF1120 domain-containing protein compare
PFLU_RS25815 -0.7 -1.6 transcription termination/antitermination protein NusA compare
PFLU_RS13750 -0.7 -1.3 hypothetical protein compare
PFLU_RS27420 -0.7 -1.4 response regulator transcription factor compare
PFLU_RS03765 -0.7 -4.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS09500 -0.7 -1.0 hypothetical protein compare
PFLU_RS19915 -0.7 -1.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS17160 -0.7 -2.3 hypothetical protein compare
PFLU_RS10430 -0.7 -2.2 peptidase compare
PFLU_RS12450 -0.7 -4.5 cyclic peptide export ABC transporter compare
PFLU_RS28300 -0.7 -3.4 chemotaxis protein compare
PFLU_RS22600 -0.7 -2.0 RNA polymerase sigma factor SigX compare
PFLU_RS01615 -0.7 -1.4 DUF2164 domain-containing protein compare
PFLU_RS29275 -0.7 -3.9 DUF484 family protein compare
PFLU_RS07540 -0.6 -1.6 class II glutamine amidotransferase compare
PFLU_RS13665 -0.6 -1.0 MarR family transcriptional regulator compare
PFLU_RS10740 -0.6 -3.0 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS20345 -0.6 -1.8 hypothetical protein compare
PFLU_RS27400 -0.6 -3.0 ABC transporter permease compare
PFLU_RS13910 -0.6 -2.9 hypothetical protein compare
PFLU_RS00555 -0.6 -3.7 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
PFLU_RS00545 -0.6 -5.2 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
PFLU_RS13000 -0.6 -4.7 methionine synthase compare
PFLU_RS23545 -0.6 -2.0 SRPBCC family protein compare
PFLU_RS15990 -0.6 -1.2 SDR family oxidoreductase compare
PFLU_RS30420 -0.6 -2.4 hypothetical protein compare
PFLU_RS30630 -0.6 -0.9 hypothetical protein compare
PFLU_RS31185 -0.6 -2.4 hypothetical protein compare
PFLU_RS29195 -0.6 -3.7 heme biosynthesis protein HemY compare
PFLU_RS30995 -0.6 -2.5 DUF2986 domain-containing protein compare
PFLU_RS26500 -0.6 -2.9 Lrp/AsnC family transcriptional regulator compare
PFLU_RS05250 -0.6 -1.8 elongation factor 4 compare
PFLU_RS08105 -0.6 -3.3 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium D,L-Lactate across organisms