Experiment set8IT095 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS24205 -5.1 -3.5 DNA binding protein compare
PFLU_RS00180 -4.9 -8.9 tryptophan synthase subunit beta compare
PFLU_RS01625 -4.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27365 -4.8 -12.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS06055 -4.7 -2.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS11305 -4.7 -12.5 xylose isomerase conserved
PFLU_RS28535 -4.7 -20.3 dihydroxy-acid dehydratase compare
PFLU_RS25735 -4.6 -7.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25760 -4.6 -15.5 glucose-6-phosphate isomerase compare
PFLU_RS13380 -4.5 -11.3 xylulokinase conserved
PFLU_RS01620 -4.5 -12.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28390 -4.5 -15.0 methionine biosynthesis protein MetW compare
PFLU_RS28695 -4.5 -10.3 phosphoglycerate dehydrogenase compare
PFLU_RS27370 -4.5 -15.6 anthranilate phosphoribosyltransferase compare
PFLU_RS25645 -4.5 -4.3 acetolactate synthase small subunit compare
PFLU_RS24330 -4.5 -9.9 phosphogluconate dehydratase compare
PFLU_RS20540 -4.4 -14.4 phosphoribosylanthranilate isomerase compare
PFLU_RS00175 -4.4 -13.1 tryptophan synthase subunit alpha compare
PFLU_RS25715 -4.4 -16.1 RNA polymerase-binding protein DksA compare
PFLU_RS00415 -4.4 -3.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25640 -4.3 -17.3 ketol-acid reductoisomerase compare
PFLU_RS01900 -4.3 -11.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20580 -4.3 -16.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28385 -4.2 -16.4 homoserine O-acetyltransferase compare
PFLU_RS27475 -4.1 -10.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS25585 -4.1 -5.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS11310 -4.0 -10.1 DNA-binding transcriptional regulator conserved
PFLU_RS20565 -4.0 -17.6 3-isopropylmalate dehydrogenase compare
PFLU_RS20515 -4.0 -8.9 amidophosphoribosyltransferase compare
PFLU_RS12980 -4.0 -12.8 nitrite/sulfite reductase compare
PFLU_RS02590 -3.9 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01610 -3.9 -15.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24765 -3.9 -22.9 2-isopropylmalate synthase compare
PFLU_RS20575 -3.8 -7.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS04470 -3.7 -14.0 histidinol dehydrogenase compare
PFLU_RS01605 -3.7 -9.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20510 -3.6 -15.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25360 -3.6 -8.9 glutamate 5-kinase compare
PFLU_RS04465 -3.5 -10.4 ATP phosphoribosyltransferase compare
PFLU_RS22595 -3.5 -6.8 OmpA family protein compare
PFLU_RS28165 -3.4 -14.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04565 -3.3 -1.6 TMEM165/GDT1 family protein compare
PFLU_RS10325 -3.2 -10.3 MFS transporter compare
PFLU_RS09055 -3.2 -9.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS13540 -3.2 -9.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS12975 -3.2 -6.5 DUF934 domain-containing protein compare
PFLU_RS13405 -3.2 -13.6 sugar ABC transporter substrate-binding protein conserved
PFLU_RS18615 -3.2 -4.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02275 -3.1 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS22740 -3.0 -7.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS02490 -2.9 -11.2 phosphoserine phosphatase SerB compare
PFLU_RS18645 -2.9 -4.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS15410 -2.7 -3.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS01895 -2.7 -6.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22070 -2.6 -5.1 phosphoribosylglycinamide formyltransferase compare
PFLU_RS31590 -2.6 -2.4 hypothetical protein compare
PFLU_RS18505 -2.5 -11.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25730 -2.4 -14.0 PAS domain S-box protein compare
PFLU_RS24125 -2.4 -7.0 cold-shock protein compare
PFLU_RS03075 -2.3 -2.7 translation initiation factor Sui1 compare
PFLU_RS00210 -2.3 -2.3 OsmC family protein compare
PFLU_RS31530 -2.2 -1.3 transposase compare
PFLU_RS02670 -2.2 -5.2 hypothetical protein compare
PFLU_RS25955 -2.2 -1.8 hypothetical protein compare
PFLU_RS18635 -2.2 -3.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS23725 -2.1 -10.6 glucose-6-phosphate dehydrogenase compare
PFLU_RS13410 -2.1 -8.1 AraC family transcriptional regulator conserved
PFLU_RS19170 -2.1 -4.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07805 -2.1 -12.3 transaldolase compare
PFLU_RS25595 -2.0 -2.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS31675 -2.0 -1.9 hypothetical protein compare
PFLU_RS18675 -2.0 -5.2 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS01005 -1.9 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS18655 -1.9 -2.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS23070 -1.9 -1.6 50S ribosomal protein L32 compare
PFLU_RS24095 -1.8 -3.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS21495 -1.8 -3.8 TlpA family protein disulfide reductase compare
PFLU_RS31275 -1.8 -1.5 hypothetical protein compare
PFLU_RS01390 -1.8 -5.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS19490 -1.7 -5.1 LacI family transcriptional regulator compare
PFLU_RS05020 -1.6 -1.6 DUF1120 domain-containing protein compare
PFLU_RS23750 -1.6 -7.9 carbohydrate ABC transporter permease compare
PFLU_RS13895 -1.6 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS30165 -1.6 -6.2 ParA family protein compare
PFLU_RS23755 -1.6 -8.4 sugar ABC transporter permease conserved
PFLU_RS07520 -1.6 -1.4 hypothetical protein compare
PFLU_RS29400 -1.6 -1.5 DUF1127 domain-containing protein compare
PFLU_RS31215 -1.5 -2.6 hypothetical protein compare
PFLU_RS31800 -1.5 -1.4 hypothetical protein compare
PFLU_RS02565 -1.5 -5.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS09305 -1.5 -9.3 hypothetical protein compare
PFLU_RS28655 -1.5 -7.8 HAD family hydrolase compare
PFLU_RS19165 -1.5 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS13395 -1.5 -6.3 carbohydrate ABC transporter permease conserved
PFLU_RS09575 -1.5 -3.8 FadR family transcriptional regulator compare
PFLU_RS29290 -1.5 -3.2 hypothetical protein compare
PFLU_RS22455 -1.5 -6.7 hypothetical protein compare
PFLU_RS07275 -1.5 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS31440 -1.4 -1.1 hypothetical protein compare
PFLU_RS18625 -1.4 -5.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS27265 -1.4 -2.8 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS23745 -1.4 -5.9 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS17060 -1.4 -1.9 monooxygenase compare
PFLU_RS25205 -1.4 -4.0 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS20955 -1.4 -1.0 DUF1028 domain-containing protein compare
PFLU_RS24085 -1.4 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS05885 -1.3 -4.0 recombinase RecA compare
PFLU_RS13385 -1.3 -5.3 mannitol dehydrogenase family protein conserved
PFLU_RS28315 -1.3 -1.2 response regulator compare
PFLU_RS21300 -1.3 -3.3 cysteine hydrolase compare
PFLU_RS08660 -1.3 -2.2 heme exporter protein CcmD compare
PFLU_RS20625 -1.3 -2.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS18640 -1.3 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS24090 -1.3 -2.7 Holliday junction branch migration protein RuvA compare
PFLU_RS15795 -1.3 -2.5 hypothetical protein compare
PFLU_RS24160 -1.2 -5.2 HAMP domain-containing protein compare
PFLU_RS07910 -1.2 -1.2 type 1 fimbrial protein compare
PFLU_RS21665 -1.2 -3.6 MinD/ParA family protein compare
PFLU_RS12145 -1.2 -1.5 nuclear transport factor 2 family protein compare
PFLU_RS13400 -1.2 -3.1 sugar ABC transporter permease compare
PFLU_RS27380 -1.2 -6.9 anthranilate synthase component I compare
PFLU_RS21360 -1.2 -2.1 MarR family transcriptional regulator compare
PFLU_RS12715 -1.2 -1.2 fumarylacetoacetate hydrolase family protein compare
PFLU_RS13885 -1.2 -1.6 hypothetical protein compare
PFLU_RS23100 -1.2 -2.9 ribonuclease E compare
PFLU_RS17080 -1.2 -2.1 FadR family transcriptional regulator compare
PFLU_RS23760 -1.2 -7.0 carbohydrate ABC transporter substrate-binding protein conserved
PFLU_RS23310 -1.1 -5.9 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS31070 -1.1 -3.9 hypothetical protein compare
PFLU_RS27465 -1.1 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS18705 -1.1 -1.9 hypothetical protein compare
PFLU_RS18665 -1.1 -2.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS03765 -1.1 -5.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS28450 -1.1 -3.1 cell division ATP-binding protein FtsE compare
PFLU_RS14430 -1.1 -1.5 arsenate reductase ArsC compare
PFLU_RS07540 -1.1 -1.9 class II glutamine amidotransferase compare
PFLU_RS04660 -1.1 -2.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS18530 -1.1 -3.9 DNA translocase FtsK compare
PFLU_RS31690 -1.1 -1.5 hypothetical protein compare
PFLU_RS18670 -1.1 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS29815 -1.1 -2.5 aspartate ammonia-lyase compare
PFLU_RS07600 -1.0 -2.5 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
PFLU_RS16445 -1.0 -2.7 PIG-L family deacetylase compare
PFLU_RS09535 -1.0 -1.3 TIGR03750 family conjugal transfer protein compare
PFLU_RS00850 -1.0 -2.0 hypothetical protein compare
PFLU_RS29275 -1.0 -3.8 DUF484 family protein compare
PFLU_RS18620 -1.0 -3.3 NADH-quinone oxidoreductase subunit B compare
PFLU_RS05500 -1.0 -1.9 HigA family addiction module antidote protein compare
PFLU_RS05890 -1.0 -1.1 recombination regulator RecX compare
PFLU_RS19935 -1.0 -1.2 type II secretion system protein GspF compare
PFLU_RS25740 -1.0 -3.7 polynucleotide adenylyltransferase PcnB compare
PFLU_RS18755 -1.0 -4.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS04330 -1.0 -7.3 TIGR02099 family protein compare
PFLU_RS20765 -1.0 -1.8 hypothetical protein compare
PFLU_RS01910 -1.0 -1.0 sterol-binding protein compare
PFLU_RS30345 -1.0 -1.6 DUF2559 family protein compare
PFLU_RS23595 -1.0 -5.7 LacI family DNA-binding transcriptional regulator compare
PFLU_RS16310 -1.0 -1.5 hypothetical protein compare
PFLU_RS29880 -0.9 -5.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS15610 -0.9 -3.0 helix-turn-helix transcriptional regulator compare
PFLU_RS31310 -0.9 -1.1 phage tail protein compare
PFLU_RS16390 -0.9 -1.3 DUF411 domain-containing protein compare
PFLU_RS01765 -0.9 -4.0 histidine utilization repressor compare
PFLU_RS28665 -0.9 -5.7 threonine ammonia-lyase, biosynthetic compare
PFLU_RS11655 -0.9 -4.4 L-arabinose ABC transporter ATP-binding protein AraG compare
PFLU_RS05910 -0.9 -1.4 response regulator transcription factor compare
PFLU_RS23460 -0.9 -1.9 antibiotic biosynthesis monooxygenase compare
PFLU_RS08655 -0.9 -2.3 heme ABC transporter permease compare
PFLU_RS29875 -0.9 -5.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS25225 -0.9 -3.7 disulfide bond formation protein B compare
PFLU_RS07685 -0.9 -2.2 transcriptional repressor LexA compare
PFLU_RS07665 -0.9 -1.5 type I DNA topoisomerase compare
PFLU_RS25875 -0.9 -2.1 transcription elongation factor GreA compare
PFLU_RS11665 -0.8 -4.7 galactose mutarotase compare
PFLU_RS03770 -0.8 -4.9 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19610 -0.8 -1.9 hypothetical protein compare
PFLU_RS07215 -0.8 -2.9 hypothetical protein compare
PFLU_RS31475 -0.8 -1.0 hypothetical protein compare
PFLU_RS17495 -0.8 -1.7 hypothetical protein compare
PFLU_RS10505 -0.8 -2.6 DUF1993 domain-containing protein compare
PFLU_RS02115 -0.8 -1.8 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS14335 -0.8 -1.5 ABC transporter permease compare
PFLU_RS05630 -0.8 -0.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS12660 -0.8 -3.4 hypothetical protein compare
PFLU_RS13750 -0.8 -1.2 hypothetical protein compare
PFLU_RS20715 -0.8 -1.1 iron ABC transporter permease compare
PFLU_RS08505 -0.8 -3.1 protease HtpX compare
PFLU_RS08485 -0.8 -1.1 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS25790 -0.8 -3.1 polyribonucleotide nucleotidyltransferase compare
PFLU_RS08380 -0.8 -4.4 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS26075 -0.8 -2.0 IS66 family insertion sequence hypothetical protein compare
PFLU_RS18940 -0.8 -4.1 acyl-CoA dehydrogenase compare
PFLU_RS22380 -0.8 -2.8 sulfite exporter TauE/SafE family protein compare
PFLU_RS31780 -0.8 -1.4 hypothetical protein compare
PFLU_RS02220 -0.8 -2.5 cell division protein ZapA compare
PFLU_RS28690 -0.8 -4.9 FAD-binding oxidoreductase compare
PFLU_RS21060 -0.8 -2.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS18515 -0.8 -1.9 fluoride efflux transporter CrcB compare
PFLU_RS04945 -0.8 -1.7 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS14170 -0.8 -2.2 TIGR03067 domain-containing protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Xylose across organisms