Experiment set8IT093 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with 1-ethyl-3-methylimidazolium acetate 20 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c17410 +1.9 12.3 MFS type transporter compare
PGA1_c21690 +1.6 10.4 transporter, BCCT family compare
PGA1_c13420 +1.4 1.8 phosphoribosylformylglycinamidine synthase 1 compare
PGA1_c11810 +1.1 2.5 hypothetical protein compare
PGA1_65p00350 +1.1 7.1 hemolysin-like protein compare
PGA1_c33490 +1.0 1.3 inositol-1-monophosphatase SuhB compare
PGA1_c04010 +1.0 1.2 putative universal stress protein compare
PGA1_c02850 +0.9 1.9 peptidase S49-like protein compare
PGA1_262p01320 +0.9 2.0 Uncharacterized protein conserved in bacteria compare
PGA1_c00680 +0.9 1.6 transcriptional regulator, arsR family compare
PGA1_c07900 +0.9 5.9 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c34880 +0.9 7.3 putative response regulator compare
PGA1_c34480 +0.9 2.9 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c07870 +0.9 6.0 alpha-glucoside transport system permease protein AglF compare
PGA1_65p00280 +0.9 2.3 Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476). compare
PGA1_c08590 +0.9 5.8 heme NO binding domain-containing protein compare
PGA1_c07860 +0.9 6.6 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c08600 +0.9 6.9 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_78p00270 +0.9 2.4 lipoyl synthase LipA compare
PGA1_65p00310 +0.9 2.5 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_65p00450 +0.8 2.4 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c22140 +0.8 5.6 glutathione import ATP-binding protein GsiA compare
PGA1_c19100 +0.8 1.8 hypothetical protein compare
PGA1_c15040 +0.8 2.8 Uncharacterized conserved protein compare
PGA1_c26980 +0.8 2.3 Rho termination factor, N-terminal domain. compare
PGA1_c12300 +0.8 4.9 glucans biosynthesis glucosyltransferase H compare
PGA1_c22120 +0.8 5.1 glutathione transport system permease protein GsiC compare
PGA1_65p00370 +0.8 3.3 putative glycosyl transferase compare
PGA1_c29380 +0.7 2.0 acetyltransferase (GNAT)-like protein compare
PGA1_262p00710 +0.7 1.6 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c33190 +0.7 4.0 putative anti-sigma-B factor antagonist compare
PGA1_78p00560 +0.7 2.2 Uncharacterized conserved protein compare
PGA1_c07880 +0.7 4.9 alpha-glucoside transport system permease protein AglG compare
PGA1_c11400 +0.7 2.3 ferric uptake regulation protein Fur compare
PGA1_c22110 +0.7 3.9 putative glutathione-binding protein GsiB compare
PGA1_c20140 +0.7 4.1 putative arginine-tRNA-protein transferase compare
PGA1_c07890 +0.7 5.4 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_262p01270 +0.7 2.3 Uncharacterized conserved protein compare
PGA1_c11480 +0.7 2.4 Uncharacterized conserved protein compare
PGA1_262p00900 +0.6 1.1 ABC transporter, ATP-binding protein compare
PGA1_c29020 +0.6 2.1 hypothetical protein compare
PGA1_c24290 +0.6 2.4 hypothetical protein compare
PGA1_c17790 +0.6 1.1 putative gene transfer agent protein compare
PGA1_c22130 +0.6 3.4 putative glutathione transport system permease protein GsiD compare
PGA1_262p00080 +0.6 2.0 hypothetical protein compare
PGA1_c18580 +0.6 1.2 hypothetical protein compare
PGA1_c01100 +0.6 1.4 Heat shock protein compare
PGA1_c01220 +0.6 3.1 putative 3-hydroxybutyryl-CoA dehydrogenase compare
PGA1_c35250 +0.6 3.1 hypothetical protein compare
PGA1_78p00150 +0.6 1.1 putative HTH-type transcriptional regulator compare
PGA1_c12640 +0.5 2.5 D-lactate transporter, ATP-binding component (from data) compare
PGA1_c34890 +0.5 3.9 putative histidine-containing phosphotransfer protein compare
PGA1_c18230 +0.5 2.0 phage-related tail protein (gpU) compare
PGA1_c13050 +0.5 2.2 Zn-dependent hydrolases, including glyoxylases compare
PGA1_c27740 +0.5 1.8 hypothetical protein compare
PGA1_c14190 +0.5 2.8 putative transcriptional regulator, AraC family compare
PGA1_c09200 +0.5 2.0 putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PGA1_c11620 +0.5 2.4 Uncharacterized conserved protein compare
PGA1_262p01280 +0.5 1.2 transcriptional regulator, TetR family compare
PGA1_c17490 +0.5 2.3 hemolysin-type calcium-binding repeat-containing protein compare
PGA1_78p00250 +0.5 0.8 putative HTH-type transcriptional regulator compare
PGA1_c12310 +0.5 3.3 glucans biosynthesis protein G compare
PGA1_c16310 +0.5 2.4 oligopeptide /dipeptide transport ATP-binding protein compare
PGA1_262p01440 +0.5 2.1 BCCT transporter compare
PGA1_c02020 +0.5 2.0 Predicted metal-binding protein compare
PGA1_c06980 +0.5 1.4 hypothetical protein compare
PGA1_c13110 +0.5 1.6 putative nitrilotriacetate monooxygenase component B compare
PGA1_c02460 +0.5 4.4 hypothetical protein compare
PGA1_c21530 +0.5 1.4 hypothetical protein compare
PGA1_c12320 +0.5 2.1 Uncharacterized protein conserved in bacteria compare
PGA1_c34590 +0.5 2.3 putative peptidylprolyl isomerase compare
PGA1_c21660 +0.5 3.1 choline dehydrogenase BetA compare
PGA1_c17260 +0.5 1.2 hypothetical protein compare
PGA1_c24160 +0.5 0.9 hypothetical protein compare
PGA1_c02120 +0.5 2.8 hypothetical protein compare
PGA1_c30280 +0.5 2.5 DNA-binding protein, YbaB/EbfC family compare
PGA1_c10585 +0.5 1.3 hypothetical protein compare
PGA1_c23480 +0.5 1.1 putative D-beta-hydroxybutyrate dehydrogenase compare
PGA1_c14640 +0.5 1.4 hypothetical protein compare
PGA1_c08920 +0.5 2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB compare
PGA1_c15960 +0.5 3.3 Predicted ATPase compare
PGA1_c00610 +0.5 0.7 acetyltransferase, GNAT family compare
PGA1_c25770 +0.5 2.5 Predicted transcription regulator, contains HTH domain (MarR family) compare
PGA1_c19610 +0.4 1.3 Small integral membrane protein compare
PGA1_c25950 +0.4 1.5 putative biopolymer transport protein compare
PGA1_c10050 +0.4 1.3 Lactoylglutathione lyase and related lyases compare
PGA1_c02900 +0.4 0.7 putative molybdopterin-converting factor subunit 1 compare
PGA1_c18520 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c33580 +0.4 2.9 ribonuclease HII compare
PGA1_c32560 +0.4 1.9 high-affinity branched-chain amino acid transport ATP-binding protein compare
PGA1_65p00260 +0.4 1.7 putative metallopeptidase compare
PGA1_c28830 +0.4 2.0 sulfite exporter tauE/safE-like protein compare
PGA1_c35370 +0.4 2.9 sensor histidine kinase RegB compare
PGA1_c18560 +0.4 1.6 hypothetical protein compare
PGA1_c16830 +0.4 1.5 xanthine phosphoribosyltransferase Gpt compare
PGA1_c05180 +0.4 1.4 Predicted small integral membrane protein compare
PGA1_c22400 +0.4 1.9 phage conserved hypothetical protein, phiE125 gp8 family compare
PGA1_78p00110 +0.4 1.2 putative transporter, MFS family compare
PGA1_c04150 +0.4 1.8 thioesterase domain-containing protein compare
PGA1_c31270 +0.4 3.8 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c15590 +0.4 3.5 putative transcriptional activator protein compare
PGA1_c32390 +0.4 1.6 Predicted membrane protein compare
PGA1_c35240 +0.4 2.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
PGA1_c33220 +0.4 1.2 hemimethylated DNA-binding protein, YccV-like compare
PGA1_c31260 +0.4 3.6 Protein of unknown function (DUF3131). compare
PGA1_262p01510 +0.4 0.9 sarcosine oxidase, delta subunit compare
PGA1_c25260 +0.4 1.3 PA14 domain. compare
PGA1_c13750 +0.4 1.4 phosphopantetheine binding protein compare
PGA1_c33550 +0.4 2.2 putative fatty acid desaturase compare
PGA1_c12930 +0.4 1.8 hypothetical protein compare
PGA1_c04020 +0.4 1.4 putative branched-chain-amino-acid aminotransferase compare
PGA1_c12020 +0.4 2.7 fatty acid oxidation complex FadJ subunit alpha compare
PGA1_c02450 +0.4 3.3 putative outer membrane efflux protein compare
PGA1_c21000 +0.4 1.9 Predicted integral membrane protein (DUF2282). compare
PGA1_c15610 +0.4 1.5 alcohol dehydrogenase, zinc binding compare
PGA1_c16390 +0.4 1.5 ornithine cyclodeaminase ArcB compare
PGA1_c10680 +0.4 1.5 helix-turn-helix domain-containing protein compare
PGA1_c03950 +0.4 1.9 putative permease protein compare
PGA1_c22500 +0.4 1.2 hypothetical protein compare
PGA1_c35290 +0.4 1.6 Conserved hypothetical protein (Lin0512_fam). compare
PGA1_c29540 +0.4 1.1 hypothetical protein compare
PGA1_c09790 +0.4 1.7 cold-shock DEAD box protein A compare
PGA1_c04430 +0.4 2.7 putative peptide permease protein compare
PGA1_c28960 +0.4 2.0 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC-like protein compare
PGA1_c30210 +0.4 2.0 Uncharacterized conserved protein compare
PGA1_c22490 +0.4 1.2 hypothetical protein compare
PGA1_c27730 +0.4 1.7 hypothetical protein compare
PGA1_262p01060 +0.4 1.1 Protein of unknown function (DUF995). compare
PGA1_c17980 +0.4 1.1 protein CsaA compare
PGA1_262p02370 +0.4 1.1 putative histidine transport system permease protein HisQ compare
PGA1_262p01340 +0.4 2.0 hypothetical protein compare
PGA1_262p00810 +0.3 1.4 putative flavoprotein, HFCD family compare
PGA1_c36270 +0.3 0.8 hypothetical protein compare
PGA1_c29760 +0.3 1.0 iojap-like ribosome-associated protein compare
PGA1_c17280 +0.3 1.1 cystathionine beta-synthase-like protein compare
PGA1_c16680 +0.3 1.7 sugar ABC transporter, ATP-binding protein compare
PGA1_c21110 +0.3 1.6 Protein of unknown function (DUF1185). compare
PGA1_c34340 +0.3 1.7 putative HTH-type transcriptional regulator compare
PGA1_78p00140 +0.3 0.7 Sugar phosphate isomerases/epimerases compare
PGA1_c26570 +0.3 1.9 putative glyoxylate/hydroxypyruvate reductase A compare
PGA1_c16360 +0.3 0.9 putative transriptional regulator, AsnC family compare
PGA1_65p00340 +0.3 1.0 Sulfotransferase family. compare
PGA1_c24400 +0.3 1.4 hypothetical protein compare
PGA1_c24360 +0.3 1.6 hypothetical protein compare
PGA1_c35050 +0.3 1.8 oxygen-independent coproporphyrinogen III oxidase HemN compare
PGA1_c35660 +0.3 1.3 hypothetical protein compare
PGA1_c27750 +0.3 1.8 ABC-type tungstate transport system, permease component compare
PGA1_c20230 +0.3 1.7 hypothetical protein compare
PGA1_c03230 +0.3 1.2 putative formate dehydrogenase, subunit FdhD compare
PGA1_262p01530 +0.3 1.2 transcriptional regulator, GntR family compare
PGA1_c30100 +0.3 0.9 cytochrome c oxidase subunit 4 compare
PGA1_c13770 +0.3 2.2 putative cytochrome P450 compare
PGA1_c06440 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
PGA1_c34850 +0.3 1.4 putative NUDIX hydrolase compare
PGA1_c13680 +0.3 1.7 Prolyl oligopeptidase family. compare
PGA1_c36020 +0.3 0.5 putative 3'-5'-exonuclease compare
PGA1_c02430 +0.3 2.1 type I secretion membrane fusion protein, HlyD family compare
PGA1_c17160 +0.3 0.9 Stress-induced morphogen (activity unknown) compare
PGA1_c04360 +0.3 1.3 putative phosphoglycerate mutase family protein compare
PGA1_c15050 +0.3 1.0 Uncharacterized enzyme involved in pigment biosynthesis compare
PGA1_c04950 +0.3 0.6 GTP-dependent nucleic acid-binding protein EngD compare
PGA1_c22370 +0.3 1.1 hypothetical protein compare
PGA1_262p01780 +0.3 1.1 transcriptional regulator, LysR family compare
PGA1_c27040 +0.3 1.6 Predicted permease compare
PGA1_c18130 +0.3 0.9 transglycosylase-like protein compare
PGA1_c29200 +0.3 2.0 putative molybdopterin-binding protein compare
PGA1_c25610 +0.3 1.8 hypothetical protein compare
PGA1_c10300 +0.3 1.6 acetyl-coenzyme A synthetase AcsA compare
PGA1_c18280 +0.3 1.3 hypothetical protein compare
PGA1_c17340 +0.3 1.9 acyl-CoA dehydrogenase AcdA compare
PGA1_c09140 +0.3 1.2 dethiobiotin synthetase BioD compare
PGA1_c10270 +0.3 1.9 hypothetical protein compare
PGA1_c13700 +0.3 1.4 hypothetical protein compare
PGA1_c04740 +0.3 1.9 phoH-like protein compare
PGA1_c04050 +0.3 1.4 phenylacetic acid degradation protein PaaD compare
PGA1_c06810 +0.3 2.0 putative dipeptide transport ATP-binding protein DppD compare
PGA1_c09580 +0.3 0.8 antibiotic biosynthesis monooxygenase-like protein compare
PGA1_c03920 +0.3 0.9 Putative transmembrane protein (Alph_Pro_TM). compare
PGA1_c02740 +0.3 1.6 sn-glycerol-3-phosphate import ATP-binding protein UgbC compare
PGA1_c13630 +0.3 2.1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. compare
PGA1_c19210 +0.3 1.4 hypothetical protein compare
PGA1_c20810 +0.3 1.6 MFS-type transporter compare
PGA1_c28260 +0.3 1.4 glyoxylate reductase GyaR compare
PGA1_c24240 +0.3 1.6 putative S-adenosylmethionine uptake transporter compare
PGA1_c20370 +0.3 0.8 tRNA-Asp compare
PGA1_c11510 +0.3 1.4 gamma-glutamylputrescine oxidoreductase PuuB compare
PGA1_c14030 +0.3 1.3 Uncharacterized MobA-related protein compare
PGA1_c29600 +0.3 1.4 hypothetical protein compare
PGA1_c15060 +0.3 1.8 carbohydrate kinase, PfkB family compare
PGA1_c09260 +0.3 0.9 Uncharacterized conserved protein compare
PGA1_c07210 +0.3 1.6 inositol 2-dehydrogenase IdhA compare
PGA1_c18390 +0.3 1.0 hypothetical protein compare
PGA1_c28160 +0.3 1.5 ABC transporter, permease protein compare
PGA1_c20440 +0.3 1.6 hypothetical protein compare
PGA1_c24300 +0.3 1.2 Uracil-DNA glycosylase compare
PGA1_c25140 +0.3 1.9 hydroxyacylglutathione hydrolase GloB compare
PGA1_c24110 +0.3 0.9 hypothetical protein compare
PGA1_c28360 +0.3 1.7 Putative amidoligase enzyme. compare
PGA1_c18370 +0.3 1.5 hypothetical protein compare
PGA1_c09340 +0.3 1.2 putative transcriptional regulator, AsnC family compare


Specific Phenotypes

For 5 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Phaeobacter inhibens DSM 17395

For stress 1-ethyl-3-methylimidazolium acetate across organisms