Experiment set8IT090 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -5.3 -8.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25640 -5.2 -15.3 ketol-acid reductoisomerase compare
PFLU_RS27365 -5.1 -11.9 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28695 -5.0 -10.7 phosphoglycerate dehydrogenase compare
PFLU_RS28390 -5.0 -15.3 methionine biosynthesis protein MetW compare
PFLU_RS09055 -4.9 -6.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01605 -4.9 -11.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20565 -4.9 -18.8 3-isopropylmalate dehydrogenase compare
PFLU_RS20580 -4.8 -15.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20515 -4.7 -7.2 amidophosphoribosyltransferase compare
PFLU_RS02490 -4.7 -17.7 phosphoserine phosphatase SerB compare
PFLU_RS01610 -4.6 -16.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20540 -4.5 -15.8 phosphoribosylanthranilate isomerase compare
PFLU_RS28535 -4.5 -21.7 dihydroxy-acid dehydratase compare
PFLU_RS24765 -4.5 -26.5 2-isopropylmalate synthase compare
PFLU_RS00180 -4.4 -10.3 tryptophan synthase subunit beta compare
PFLU_RS01620 -4.4 -12.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20510 -4.4 -18.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28655 -4.2 -19.5 HAD family hydrolase compare
PFLU_RS27370 -4.2 -16.9 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -4.2 -18.1 homoserine O-acetyltransferase compare
PFLU_RS00175 -4.2 -13.9 tryptophan synthase subunit alpha compare
PFLU_RS28165 -4.1 -17.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01625 -4.0 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS04470 -3.9 -17.2 histidinol dehydrogenase compare
PFLU_RS25645 -3.8 -4.3 acetolactate synthase small subunit compare
PFLU_RS25735 -3.8 -12.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29885 -3.6 -13.8 LysR family transcriptional regulator compare
PFLU_RS29880 -3.6 -17.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12980 -3.6 -13.5 nitrite/sulfite reductase compare
PFLU_RS01895 -3.5 -7.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS12975 -3.4 -7.2 DUF934 domain-containing protein compare
PFLU_RS25360 -3.2 -10.4 glutamate 5-kinase compare
PFLU_RS29515 -3.2 -14.4 RidA family protein compare
PFLU_RS23310 -3.2 -14.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS29875 -3.1 -17.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS22740 -3.1 -8.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS23070 -3.0 -2.7 50S ribosomal protein L32 compare
PFLU_RS18505 -3.0 -14.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01875 -2.9 -2.5 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS05690 -2.8 -4.3 Grx4 family monothiol glutaredoxin compare
PFLU_RS06055 -2.8 -2.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS22105 -2.8 -6.8 cysteine synthase CysM compare
PFLU_RS22070 -2.7 -7.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS22630 -2.7 -17.9 phosphoenolpyruvate synthase compare
PFLU_RS13540 -2.6 -8.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22595 -2.6 -5.2 OmpA family protein compare
PFLU_RS01900 -2.4 -8.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23305 -2.3 -11.4 arginine N-succinyltransferase compare
PFLU_RS04465 -2.3 -8.5 ATP phosphoribosyltransferase compare
PFLU_RS23065 -2.2 -10.5 phosphate acyltransferase PlsX compare
PFLU_RS02275 -2.2 -3.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS02590 -2.1 -9.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS02565 -1.8 -8.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS04140 -1.7 -3.6 response regulator transcription factor compare
PFLU_RS05885 -1.7 -6.8 recombinase RecA compare
PFLU_RS13665 -1.6 -2.0 MarR family transcriptional regulator compare
PFLU_RS12260 -1.6 -2.6 hypothetical protein compare
PFLU_RS24125 -1.6 -6.1 cold-shock protein compare
PFLU_RS31590 -1.5 -2.4 hypothetical protein compare
PFLU_RS27380 -1.5 -8.3 anthranilate synthase component I compare
PFLU_RS04220 -1.4 -7.4 FadR family transcriptional regulator compare
PFLU_RS07275 -1.4 -3.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS25945 -1.4 -9.4 L-lactate permease conserved
PFLU_RS25585 -1.4 -3.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS02050 -1.4 -10.2 NAD(P)-binding protein compare
PFLU_RS28315 -1.3 -1.0 response regulator compare
PFLU_RS01320 -1.3 -7.3 phosphoenolpyruvate carboxykinase compare
PFLU_RS21495 -1.3 -3.3 TlpA family protein disulfide reductase compare
PFLU_RS24085 -1.3 -4.1 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS29095 -1.3 -11.1 polyphosphate kinase 1 compare
PFLU_RS22455 -1.3 -7.0 hypothetical protein compare
PFLU_RS18530 -1.2 -5.8 DNA translocase FtsK compare
PFLU_RS25730 -1.2 -9.0 PAS domain S-box protein compare
PFLU_RS02045 -1.2 -10.3 glutamate synthase large subunit compare
PFLU_RS28665 -1.2 -8.9 threonine ammonia-lyase, biosynthetic compare
PFLU_RS24160 -1.2 -6.3 HAMP domain-containing protein compare
PFLU_RS07525 -1.2 -1.7 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS14440 -1.2 -2.3 hypothetical protein compare
PFLU_RS05020 -1.1 -1.1 DUF1120 domain-containing protein compare
PFLU_RS31215 -1.1 -1.8 hypothetical protein compare
PFLU_RS25740 -1.1 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24205 -1.1 -2.4 DNA binding protein compare
PFLU_RS08410 -1.1 -4.3 HTH-type transcriptional regulator CysB compare
PFLU_RS31275 -1.0 -1.9 hypothetical protein compare
PFLU_RS13895 -1.0 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS31185 -1.0 -4.0 hypothetical protein compare
PFLU_RS05655 -1.0 -3.5 DeoR/GlpR family transcriptional regulator compare
PFLU_RS03075 -1.0 -2.0 translation initiation factor Sui1 compare
PFLU_RS30165 -1.0 -5.6 ParA family protein compare
PFLU_RS22735 -1.0 -6.3 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS04565 -1.0 -1.3 TMEM165/GDT1 family protein compare
PFLU_RS05250 -1.0 -4.2 elongation factor 4 compare
PFLU_RS08125 -1.0 -2.3 integration host factor subunit beta compare
PFLU_RS02760 -0.9 -5.4 N-acylglucosamine 2-epimerase compare
PFLU_RS24095 -0.9 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS31290 -0.9 -2.0 EamA family transporter compare
PFLU_RS17920 -0.9 -1.6 acyltransferase compare
PFLU_RS02180 -0.9 -1.4 thioredoxin TrxC compare
PFLU_RS30160 -0.9 -2.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS26290 -0.9 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS28285 -0.9 -2.5 hypothetical protein compare
PFLU_RS00415 -0.9 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS01765 -0.9 -4.9 histidine utilization repressor compare
PFLU_RS02625 -0.9 -6.5 ribonuclease R compare
PFLU_RS08380 -0.9 -5.2 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS27805 -0.9 -1.6 sarcosine oxidase subunit gamma family protein compare
PFLU_RS09495 -0.9 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS27375 -0.8 -2.6 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS02130 -0.8 -1.9 glycosyl transferase compare
PFLU_RS05910 -0.8 -1.6 response regulator transcription factor compare
PFLU_RS28270 -0.8 -1.9 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS18735 -0.8 -1.4 hypothetical protein compare
PFLU_RS03765 -0.8 -5.7 sulfate adenylyltransferase subunit CysD compare
PFLU_RS01315 -0.8 -2.4 Hsp33 family molecular chaperone HslO compare
PFLU_RS02455 -0.8 -1.6 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS04165 -0.8 -3.8 cell division protein ZapE compare
PFLU_RS25925 -0.8 -2.1 RnfH family protein compare
PFLU_RS01960 -0.8 -2.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS02670 -0.8 -3.0 hypothetical protein compare
PFLU_RS21925 -0.7 -2.2 YecA family protein compare
PFLU_RS21935 -0.7 -6.3 sensor histidine kinase compare
PFLU_RS30730 -0.7 -2.0 helix-turn-helix domain-containing protein compare
PFLU_RS10595 -0.7 -1.6 hypothetical protein compare
PFLU_RS18940 -0.7 -5.0 acyl-CoA dehydrogenase compare
PFLU_RS01615 -0.7 -1.8 DUF2164 domain-containing protein compare
PFLU_RS01660 -0.7 -1.5 rhodanese-like domain-containing protein compare
PFLU_RS24090 -0.7 -2.6 Holliday junction branch migration protein RuvA compare
PFLU_RS21740 -0.7 -3.8 Hpt domain-containing protein compare
PFLU_RS12395 -0.7 -1.4 zinc ribbon domain-containing protein compare
PFLU_RS20625 -0.7 -1.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS29310 -0.7 -1.1 accessory factor UbiK family protein compare
PFLU_RS08445 -0.7 -4.1 MarR family transcriptional regulator compare
PFLU_RS20335 -0.7 -2.0 hypothetical protein compare
PFLU_RS04475 -0.7 -4.8 histidinol-phosphate transaminase compare
PFLU_RS24560 -0.7 -4.5 site-specific tyrosine recombinase XerD compare
PFLU_RS18910 -0.7 -2.5 MarR family transcriptional regulator compare
PFLU_RS19550 -0.7 -0.8 ABC transporter ATP-binding protein compare
PFLU_RS25595 -0.7 -1.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08655 -0.7 -1.5 heme ABC transporter permease compare
PFLU_RS28965 -0.7 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS21215 -0.7 -1.5 YheU family protein compare
PFLU_RS24670 -0.7 -1.1 HigA family addiction module antidote protein compare
PFLU_RS27475 -0.7 -4.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS01685 -0.7 -2.9 nitrogen regulation protein NR(I) compare
PFLU_RS31490 -0.7 -1.3 hypothetical protein compare
PFLU_RS00555 -0.7 -3.5 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
PFLU_RS03770 -0.7 -5.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS19010 -0.6 -1.8 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS01390 -0.6 -3.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS26660 -0.6 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS08920 -0.6 -4.7 DUF485 domain-containing protein compare
PFLU_RS02215 -0.6 -1.6 hypothetical protein compare
PFLU_RS23730 -0.6 -4.9 MurR/RpiR family transcriptional regulator compare
PFLU_RS14355 -0.6 -2.3 DUF2388 domain-containing protein compare
PFLU_RS01965 -0.6 -1.3 ATP-dependent protease subunit HslV compare
PFLU_RS00395 -0.6 -5.0 DNA polymerase I compare
PFLU_RS19635 -0.6 -2.0 SDR family oxidoreductase compare
PFLU_RS00535 -0.6 -1.1 DUF1127 domain-containing protein compare
PFLU_RS25800 -0.6 -3.5 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS25225 -0.6 -3.6 disulfide bond formation protein B compare
PFLU_RS14320 -0.6 -1.6 DUF2946 domain-containing protein compare
PFLU_RS14050 -0.6 -1.0 hypothetical protein compare
PFLU_RS09575 -0.6 -2.4 FadR family transcriptional regulator compare
PFLU_RS18755 -0.6 -3.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS22600 -0.6 -2.2 RNA polymerase sigma factor SigX compare
PFLU_RS08735 -0.6 -1.2 histidine phosphatase family protein compare
PFLU_RS05800 -0.6 -2.8 phage baseplate protein compare
PFLU_RS19610 -0.6 -1.5 hypothetical protein compare
PFLU_RS18700 -0.6 -2.1 hypothetical protein compare
PFLU_RS08615 -0.6 -1.5 YgdI/YgdR family lipoprotein compare
PFLU_RS21125 -0.6 -4.9 FMN-dependent L-lactate dehydrogenase LldD compare
PFLU_RS15205 -0.6 -1.4 ribose ABC transporter permease compare
PFLU_RS27465 -0.6 -2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS02355 -0.6 -2.4 GNAT family N-acetyltransferase compare
PFLU_RS21265 -0.6 -3.5 helix-turn-helix transcriptional regulator compare
PFLU_RS10405 -0.6 -1.5 helix-turn-helix transcriptional regulator compare
PFLU_RS25950 -0.6 -4.5 FAD-binding oxidoreductase conserved
PFLU_RS19955 -0.6 -1.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS19935 -0.6 -1.4 type II secretion system protein GspF compare
PFLU_RS29195 -0.6 -3.7 heme biosynthesis protein HemY compare
PFLU_RS26440 -0.6 -1.7 acyl carrier protein compare
PFLU_RS16300 -0.6 -1.8 hypothetical protein compare
PFLU_RS01665 -0.6 -1.1 glutaredoxin 3 compare
PFLU_RS08385 -0.6 -2.1 PilZ domain-containing protein compare
PFLU_RS05780 -0.6 -4.3 helix-turn-helix transcriptional regulator compare
PFLU_RS28650 -0.6 -2.5 RNA pyrophosphohydrolase compare
PFLU_RS08925 -0.6 -5.1 cation acetate symporter compare
PFLU_RS08535 -0.6 -4.2 response regulator compare
PFLU_RS29275 -0.6 -3.2 DUF484 family protein compare
PFLU_RS01150 -0.6 -3.3 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS18740 -0.6 -2.5 Dyp-type peroxidase compare
PFLU_RS03995 -0.6 -0.6 hypothetical protein compare
PFLU_RS20520 -0.6 -3.6 colicin V production protein CvpA compare
PFLU_RS20660 -0.6 -3.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS02325 -0.6 -1.6 ATP-binding cassette domain-containing protein compare
PFLU_RS23380 -0.6 -1.3 HAD-IB family hydrolase compare
PFLU_RS21360 -0.5 -1.3 MarR family transcriptional regulator compare
PFLU_RS25200 -0.5 -3.2 protoheme IX farnesyltransferase compare
PFLU_RS03555 -0.5 -0.6 EscS/YscS/HrcS family type III secretion system export apparatus protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens SBW25-INTG

For carbon source Sodium D,L-Lactate across organisms