Experiment set8IT090 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Sodium acetate 140 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c29730 +1.4 8.0 Predicted membrane protein compare
PGA1_c19100 +1.3 2.9 hypothetical protein compare
PGA1_c13410 +1.2 2.8 phosphoribosylformylglycinamidine (FGAM) synthase PurS compare
PGA1_c31230 +1.1 1.6 hypothetical protein compare
PGA1_c06480 +1.0 2.1 hypothetical protein compare
PGA1_c03920 +1.0 1.7 Putative transmembrane protein (Alph_Pro_TM). compare
PGA1_c09460 +0.9 2.7 Uncharacterized conserved small protein compare
PGA1_c29740 +0.8 2.1 hypothetical protein compare
PGA1_78p00490 +0.8 1.9 putative HTH-type transcriptional regulator compare
PGA1_262p01060 +0.8 2.5 Protein of unknown function (DUF995). compare
PGA1_262p01320 +0.8 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c14960 +0.8 2.0 putative transcriptional regulator compare
PGA1_c03530 +0.8 2.7 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_262p01120 +0.8 0.9 hypothetical protein compare
PGA1_c01060 +0.8 2.5 ribonuclease 3 compare
PGA1_c10800 +0.8 2.6 Uncharacterized protein conserved in bacteria (DUF2199). compare
PGA1_c34880 +0.7 6.0 putative response regulator compare
PGA1_c18900 +0.7 1.2 Uncharacterized conserved protein compare
PGA1_c22810 +0.7 1.1 hypothetical protein compare
PGA1_c13430 +0.7 2.7 C4-dicarboxylate transport sensor protein DctB compare
PGA1_78p00030 +0.7 1.8 putative multicopper oxidase compare
PGA1_262p01170 +0.7 2.4 putative nnrS protein compare
PGA1_c03930 +0.7 1.9 Predicted permeases compare
PGA1_262p01510 +0.7 1.3 sarcosine oxidase, delta subunit compare
PGA1_c08590 +0.7 4.5 heme NO binding domain-containing protein compare
PGA1_65p00310 +0.7 1.5 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_c33055 +0.7 3.0 hypothetical protein compare
PGA1_c35260 +0.7 2.2 ATP-dependent protease HslV compare
PGA1_262p02360 +0.7 2.5 putative histidine-binding periplasmic protein compare
PGA1_c21990 +0.7 2.1 putative metal-dependent hydrolase compare
PGA1_c06400 +0.7 2.6 putative antibiotic acetyltransferase compare
PGA1_c29020 +0.7 2.4 hypothetical protein compare
PGA1_c10470 +0.7 0.8 hypothetical protein compare
PGA1_c09410 +0.7 1.6 hypothetical protein compare
PGA1_c08890 +0.7 2.3 putative capsule polysaccharide export outer membrane protein compare
PGA1_262p02230 +0.7 1.3 zinc uptake regulation protein zur-like protein compare
PGA1_c12440 +0.7 1.5 sulphur oxidation protein SoxZ compare
PGA1_c34890 +0.6 4.5 putative histidine-containing phosphotransfer protein compare
PGA1_c32910 +0.6 1.0 hypothetical protein compare
PGA1_c12640 +0.6 2.6 D-lactate transporter, ATP-binding component (from data) compare
PGA1_c23480 +0.6 1.7 putative D-beta-hydroxybutyrate dehydrogenase compare
PGA1_c08600 +0.6 4.5 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_65p00340 +0.6 2.3 Sulfotransferase family. compare
PGA1_78p00340 +0.6 1.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c17440 +0.6 1.8 putative peroxiredoxin Bcp compare
PGA1_262p02010 +0.6 1.1 Uncharacterized conserved protein compare
PGA1_c20140 +0.6 3.1 putative arginine-tRNA-protein transferase compare
PGA1_78p00270 +0.6 1.4 lipoyl synthase LipA compare
PGA1_c13370 +0.6 1.3 Methionine synthase component, methyltransferase domain (EC:2.1.1.13) (from data) compare
PGA1_c05180 +0.6 1.9 Predicted small integral membrane protein compare
PGA1_c33190 +0.6 2.9 putative anti-sigma-B factor antagonist compare
PGA1_c14140 +0.6 1.1 hypothetical protein compare
PGA1_c05690 +0.6 2.2 Truncated hemoglobins compare
PGA1_c05390 +0.6 2.9 glycosyl transferase compare
PGA1_c10050 +0.6 1.4 Lactoylglutathione lyase and related lyases compare
PGA1_c14660 +0.6 2.4 putative peroxiredoxin compare
PGA1_c15660 +0.5 2.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c17700 +0.5 1.0 hypothetical protein compare
PGA1_c11480 +0.5 2.1 Uncharacterized conserved protein compare
PGA1_c21250 +0.5 1.7 aspartate aminotransferase AatA compare
PGA1_c04290 +0.5 2.9 phosphonates transport ATP-binding protein PhnL compare
PGA1_c08990 +0.5 1.3 hypothetical protein compare
PGA1_c11930 +0.5 1.9 Cytidine deaminase (EC 3.5.4.5) (from data) compare
PGA1_c08690 +0.5 1.6 hypothetical protein compare
PGA1_262p01260 +0.5 0.9 copper-containing nitrite reductase NirK compare
PGA1_65p00110 +0.5 1.1 putative amino-acid ABC transporter, periplasmic solute-binding protein compare
PGA1_c11440 +0.5 1.7 hypothetical protein compare
PGA1_65p00430 +0.5 1.9 putative glycosyl transferase compare
PGA1_c21260 +0.5 1.7 hypothetical protein compare
PGA1_c14190 +0.5 2.8 putative transcriptional regulator, AraC family compare
PGA1_c36020 +0.5 0.9 putative 3'-5'-exonuclease compare
PGA1_c11510 +0.5 2.2 gamma-glutamylputrescine oxidoreductase PuuB compare
PGA1_c02990 +0.5 1.5 hypothetical protein compare
PGA1_c33610 +0.5 2.2 hypothetical protein compare
PGA1_c02500 +0.5 1.5 transcriptional regulator, GntR family compare
PGA1_c13050 +0.5 2.6 Zn-dependent hydrolases, including glyoxylases compare
PGA1_c32230 +0.5 1.9 putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase compare
PGA1_c12290 +0.5 1.0 Poly(3-hydroxybutyrate) depolymerase compare
PGA1_c35270 +0.5 1.3 Uncharacterized conserved small protein compare
PGA1_65p00070 +0.5 0.8 putative regulatory protein, LuxR family compare
PGA1_c26360 +0.5 1.5 cold shock protein compare
PGA1_c23930 +0.5 2.2 putative histidinol-phosphate aminotransferase compare
PGA1_c25070 +0.5 1.6 H-type lectin domain. compare
PGA1_c01080 +0.5 1.4 Uncharacterized conserved protein compare
PGA1_c17520 +0.5 1.9 putative peptidyl-prolyl cis-trans isomerase A compare
PGA1_262p02070 +0.5 1.0 hypothetical protein compare
PGA1_c20100 +0.5 2.7 Protein of unknown function (DUF1353). compare
PGA1_c16520 +0.5 1.4 putative branched-chain amino acid transporter, ATP-binding protein compare
PGA1_c31270 +0.5 4.1 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c31260 +0.5 4.1 Protein of unknown function (DUF3131). compare
PGA1_c06440 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
PGA1_c03360 +0.4 1.1 Predicted O-methyltransferase compare
PGA1_c13110 +0.4 1.6 putative nitrilotriacetate monooxygenase component B compare
PGA1_c18530 +0.4 1.4 hypothetical protein compare
PGA1_c06020 +0.4 1.3 thioesterase domain-containing protein compare
PGA1_c22500 +0.4 1.0 hypothetical protein compare
PGA1_c10680 +0.4 1.7 helix-turn-helix domain-containing protein compare
PGA1_c20600 +0.4 1.9 Protein of unknown function (DUF1826). compare
PGA1_c21630 +0.4 1.9 putative transcriptional regulator compare
PGA1_c24310 +0.4 1.9 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_262p01220 +0.4 1.8 nitric oxide reductase subunit B compare
PGA1_262p00180 +0.4 2.6 transcriptional regulator, AsnC family compare
PGA1_c06190 +0.4 1.8 hypothetical protein compare
PGA1_c00680 +0.4 1.2 transcriptional regulator, arsR family compare
PGA1_262p00490 +0.4 1.0 hypothetical protein compare
PGA1_c32130 +0.4 2.1 nicotinate phosphoribosyltransferase PncB compare
PGA1_c09160 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
PGA1_c16110 +0.4 0.9 putative ion channel compare
PGA1_c26380 +0.4 1.7 ABC transporter, ATP-binding protein compare
PGA1_c21010 +0.4 2.2 component of stress sensing system, with PGA1_c21020 (DUF2063) (from data) compare
PGA1_78p00280 +0.4 1.3 putative sodium/alanine symporter compare
PGA1_c15100 +0.4 1.4 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
PGA1_c18580 +0.4 1.4 hypothetical protein compare
PGA1_c32520 +0.4 1.4 Protein of unknown function (DUF2938). compare
PGA1_c13280 +0.4 1.3 hypothetical protein compare
PGA1_c01150 +0.4 2.9 transcriptional regulatory protein ChvI compare
PGA1_c34430 +0.4 1.8 putrescine transport ATP-binding protein PotG compare
PGA1_c35910 +0.4 1.7 putative flagellar hook capping protein compare
PGA1_c23580 +0.4 1.4 Predicted membrane protein compare
PGA1_c11280 +0.4 1.9 Putative hemolysin compare
PGA1_262p00300 +0.4 1.7 ABC transporter, extracellular solute-binding protein compare
PGA1_c23470 +0.4 1.0 transcriptional regulator, MarR family compare
PGA1_c28790 +0.4 1.8 Predicted permeases compare
PGA1_c24180 +0.4 1.6 LAO/AO transport system kinase ArgK compare
PGA1_c04600 +0.4 1.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
PGA1_c24390 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
PGA1_c20890 +0.4 1.4 Molybdopterin biosynthesis enzyme compare
PGA1_c06450 +0.4 1.7 short-chain dehydrogenases/reductase domain-containing protein compare
PGA1_c12090 +0.4 1.6 transcriptional regulator , MerR family compare
PGA1_262p00590 +0.4 1.1 Protein of unknown function (DUF2886). compare
PGA1_c34190 +0.4 1.4 methyltransferase-like protein compare
PGA1_c25190 +0.4 2.0 hypothetical protein compare
PGA1_c21100 +0.4 1.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
PGA1_c29750 +0.4 1.4 putative ribosomal RNA large subunit methyltransferase compare
PGA1_c30570 +0.4 1.5 Predicted metal-dependent hydrolase compare
PGA1_c08410 +0.4 1.6 hypothetical protein compare
PGA1_c02900 +0.4 0.5 putative molybdopterin-converting factor subunit 1 compare
PGA1_c06130 +0.4 0.8 outer membrane protein OmpA-like protein compare
PGA1_c34940 +0.4 0.9 Putative sterol carrier protein compare
PGA1_c21700 +0.4 2.2 HTH-type transcriptional regulator compare
PGA1_c18630 +0.4 0.7 hypothetical protein compare
PGA1_c18520 +0.4 1.1 Uncharacterized protein conserved in bacteria compare
PGA1_c09140 +0.4 1.5 dethiobiotin synthetase BioD compare
PGA1_c16240 +0.4 2.2 methylthioribose-1-phosphate isomerase MtnA compare
PGA1_c06430 +0.4 2.0 hypothetical protein compare
PGA1_c21900 +0.4 1.1 Uncharacterized conserved small protein compare
PGA1_c30130 +0.4 1.6 putative universal stress protein compare
PGA1_c27370 +0.4 1.9 histidinol dehydrogenase HisD compare
PGA1_c00610 +0.4 0.6 acetyltransferase, GNAT family compare
PGA1_262p02380 +0.4 1.8 putative histidine transport system permease protein HisM compare
PGA1_c31400 +0.4 1.7 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH compare
PGA1_c07070 +0.4 1.9 acetyltransferase domain-containing protein compare
PGA1_c35740 +0.4 1.1 hypothetical protein compare
PGA1_c22350 +0.4 1.6 hypothetical protein compare
PGA1_262p00210 +0.4 1.8 alcohol dehydrogenase AlkJ compare
PGA1_c00800 +0.4 1.7 hypothetical protein compare
PGA1_c25770 +0.4 2.0 Predicted transcription regulator, contains HTH domain (MarR family) compare
PGA1_262p00080 +0.4 1.1 hypothetical protein compare
PGA1_c36300 +0.4 2.1 HTH-type transcriptional regulator, GntR family compare
PGA1_262p00420 +0.4 1.9 Transcriptional regulator/sugar kinase compare
PGA1_c19680 +0.4 1.3 putative transcriptional regulator, crp family compare
PGA1_c11470 +0.4 1.1 acetyltransferase domain-containing protein compare
PGA1_262p01050 +0.4 1.8 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_65p00350 +0.4 2.0 hemolysin-like protein compare
PGA1_262p01620 +0.4 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c07710 +0.3 0.6 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c15850 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_262p00730 +0.3 0.6 putative signal transduction histidine kinase compare
PGA1_c28260 +0.3 1.2 glyoxylate reductase GyaR compare
PGA1_c16830 +0.3 1.0 xanthine phosphoribosyltransferase Gpt compare
PGA1_262p01160 +0.3 1.0 Uncharacterized iron-regulated membrane protein compare
PGA1_c29150 +0.3 0.9 hypothetical protein compare
PGA1_c22070 +0.3 1.1 Cytochrome B561 compare
PGA1_c15330 +0.3 0.9 hypothetical protein compare
PGA1_c22160 +0.3 1.4 hypothetical protein compare
PGA1_c13750 +0.3 1.5 phosphopantetheine binding protein compare
PGA1_78p00500 +0.3 1.2 putative transcriptional regulator compare
PGA1_c16990 +0.3 1.1 putative enoyl-CoA hydratase FadB compare
PGA1_78p00100 +0.3 1.1 flavohemoprotein Hmp compare
PGA1_c15050 +0.3 0.9 Uncharacterized enzyme involved in pigment biosynthesis compare
PGA1_c16680 +0.3 1.7 sugar ABC transporter, ATP-binding protein compare
PGA1_262p00570 +0.3 0.8 hypothetical protein compare
PGA1_c17110 +0.3 1.8 hypothetical protein compare
PGA1_c15040 +0.3 1.0 Uncharacterized conserved protein compare
PGA1_c04940 +0.3 1.7 Lipid A 3-O-deacylase (PagL). compare
PGA1_c34390 +0.3 1.4 spermidine/putrescine import ATP-binding protein PotA compare
PGA1_262p01440 +0.3 1.1 BCCT transporter compare
PGA1_c16980 +0.3 1.1 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_262p00740 +0.3 1.3 putative peptidase, family M20/M25/M40 compare
PGA1_c16370 +0.3 0.9 arginase ArcA compare
PGA1_262p00270 +0.3 0.9 transcriptional regulator, GntR family compare
PGA1_c05360 +0.3 2.1 putative glycosyl transferase compare
PGA1_c03700 +0.3 0.6 Uncharacterized conserved small protein compare
PGA1_c32650 +0.3 1.7 DNA-binding response regulator compare
PGA1_c26400 +0.3 1.2 putative HTH-type transcriptional regulator compare
PGA1_c05880 +0.3 1.4 hypothetical protein compare
PGA1_c16710 +0.3 2.0 extracellular solute-binding protein compare
PGA1_c15030 +0.3 1.9 phospholipase-like protein compare
PGA1_262p00060 +0.3 0.8 putative glycosyl transferase compare
PGA1_c27910 +0.3 1.5 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium acetate in Phaeobacter inhibens DSM 17395

For stress Sodium acetate across organisms