Experiment set8IT089 for Pseudomonas fluorescens FW300-N2C3

Compare to:

20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
AO356_21405 -5.1 -4.9 3-isopropylmalate dehydratase compare
AO356_14440 -3.7 -4.9 indole-3-glycerol-phosphate synthase compare
AO356_13155 -3.6 -14.3 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_21495 -3.5 -15.3 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) compare
AO356_21415 -3.5 -12.1 3-isopropylmalate dehydrogenase compare
AO356_21440 -3.4 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_13135 -3.4 -14.8 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO356_13405 -3.3 -10.8 methionine biosynthesis protein MetW compare
AO356_13175 -3.3 -8.2 spermidine/putrescine ABC transporter permease compare
AO356_13145 -3.3 -11.2 glutamine synthetase compare
AO356_13410 -3.2 -11.5 homoserine O-acetyltransferase compare
AO356_21465 -3.2 -4.7 amidophosphoribosyltransferase compare
AO356_13170 -3.2 -16.5 spermidine/putrescine ABC transporter permease compare
AO356_08635 -3.2 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
AO356_13165 -3.1 -13.3 transporter compare
AO356_14435 -3.1 -7.5 anthranilate phosphoribosyltransferase compare
AO356_09810 -3.1 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06550 -3.0 -11.3 2-isopropylmalate synthase compare
AO356_12580 -3.0 -13.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
AO356_10000 -2.9 -5.6 hypothetical protein compare
AO356_09800 -2.9 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_09815 -2.9 -6.9 imidazoleglycerol-phosphate dehydratase compare
AO356_14420 -2.9 -15.0 anthranilate synthase compare
AO356_02175 -2.9 -9.6 transaldolase compare
AO356_20475 -2.9 -1.8 hypothetical protein compare
AO356_13250 -2.8 -10.0 dihydroxy-acid dehydratase compare
AO356_13150 -2.8 -16.7 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
AO356_16180 -2.8 -14.2 ketol-acid reductoisomerase compare
AO356_06970 -2.8 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_08235 -2.8 -8.6 histidine kinase compare
AO356_06965 -2.7 -7.7 histidinol dehydrogenase compare
AO356_21400 -2.7 -7.3 isopropylmalate isomerase compare
AO356_09520 -2.7 -5.9 phosphoribosyl-AMP cyclohydrolase compare
AO356_18325 -2.6 -8.8 argininosuccinate synthase compare
AO356_09525 -2.6 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_00555 -2.6 -10.3 sulfite reductase compare
AO356_10910 -2.6 -6.7 tryptophan synthase subunit alpha compare
AO356_10915 -2.5 -8.0 tryptophan synthase subunit beta compare
AO356_16175 -2.5 -6.0 acetolactate synthase 3 regulatory subunit compare
AO356_10720 -2.5 -12.0 succinate-semialdehyde dehydrogenase compare
AO356_22200 -2.5 -7.1 sirohydrochlorin ferrochelatase compare
AO356_16170 -2.4 -6.9 acetolactate synthase 3 catalytic subunit compare
AO356_16075 -2.4 -4.3 Fis family transcriptional regulator compare
AO356_13160 -2.4 -12.3 putrescine ABC transporter, substrate-binding component (from data) compare
AO356_21470 -2.4 -7.3 O-succinylhomoserine sulfhydrylase compare
AO356_10005 -2.4 -8.5 branched-chain amino acid permease (azaleucine resistance) compare
AO356_18275 -2.3 -8.6 ornithine carbamoyltransferase compare
AO356_12780 -2.3 -6.6 argininosuccinate lyase compare
AO356_26390 -2.3 -4.8 hypothetical protein compare
AO356_10300 -2.3 -5.3 3-phosphoglycerate dehydrogenase compare
AO356_17020 -2.3 -6.1 cytochrome D ubiquinol oxidase subunit III compare
AO356_19090 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
AO356_14430 -2.2 -7.3 anthranilate synthase compare
AO356_12620 -2.2 -12.0 amino acid dehydrogenase compare
AO356_09540 -2.1 -1.9 twin-arginine protein translocation system subunit TatC compare
AO356_08735 -2.1 -11.7 phosphoserine phosphatase compare
AO356_12520 -2.1 -1.4 orotate phosphoribosyltransferase compare
AO356_07195 -2.0 -6.0 GntR family transcriptional regulator compare
AO356_02265 -2.0 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_13085 -2.0 -4.5 N-acetylglutamate synthase compare
AO356_19085 -1.9 -8.5 phosphoribosylglycinamide formyltransferase compare
AO356_13140 -1.9 -7.8 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO356_19795 -1.9 -2.4 glycerol-3-phosphate dehydrogenase compare
AO356_13605 -1.9 -3.9 5,10-methylenetetrahydrofolate reductase compare
AO356_09995 -1.9 -7.3 LysR family transcriptional regulator compare
AO356_19425 -1.9 -2.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_08870 -1.8 -6.5 polymerase compare
AO356_06990 -1.8 -7.3 toluene tolerance protein compare
AO356_20830 -1.8 -3.0 phosphoadenosine phosphosulfate reductase compare
AO356_10340 -1.8 -10.9 phosphoserine phosphatase compare
AO356_10140 -1.7 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_19900 -1.7 -9.4 lysine transporter LysE compare
AO356_00560 -1.7 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_04560 -1.7 -1.8 serine peptidase compare
AO356_03095 -1.7 -5.5 protease HtpX compare
AO356_06995 -1.7 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_09795 -1.7 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12525 -1.7 -2.6 acetylglutamate kinase compare
AO356_08930 -1.7 -3.3 heptose kinase compare
AO356_16080 -1.6 -10.4 ATPase compare
AO356_19520 -1.6 -3.9 isochorismatase compare
AO356_03070 -1.6 -9.5 histidine kinase compare
AO356_12615 -1.6 -9.5 AsnC family transcriptional regulator compare
AO356_08880 -1.6 -4.0 glycosyl transferase compare
AO356_02190 -1.6 -7.6 hypothetical protein compare
AO356_14305 -1.6 -12.5 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_26455 -1.5 -2.9 hypothetical protein compare
AO356_05670 -1.5 -1.6 recombinase RecA compare
AO356_06960 -1.5 -6.7 histidinol-phosphate aminotransferase compare
AO356_12375 -1.5 -8.9 histidine kinase compare
AO356_03800 -1.5 -2.3 histidine kinase compare
AO356_09640 -1.5 -4.2 histidine utilization repressor compare
AO356_03180 -1.5 -5.1 CysB family transcriptional regulator compare
AO356_07005 -1.4 -1.8 ABC transporter ATP-binding protein compare
AO356_08890 -1.4 -6.4 glycosyltransferase compare
AO356_03420 -1.4 -6.5 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_00920 -1.4 -2.4 cold-shock protein compare
AO356_03810 -1.4 -4.0 anti-anti-sigma factor compare
AO356_06385 -1.4 -2.0 recombinase XerD compare
AO356_24845 -1.4 -1.9 ATPase compare
AO356_03405 -1.4 -2.6 serine acetyltransferase compare
AO356_14505 -1.4 -1.2 peptidase M23 compare
AO356_16670 -1.4 -9.4 adenylylsulfate kinase compare
AO356_16665 -1.4 -9.5 sulfate adenylyltransferase compare
AO356_18780 -1.4 -2.6 carbon storage regulator compare
AO356_23155 -1.4 -7.3 RpiR family transcriptional regulator compare
AO356_13455 -1.4 -3.1 uracil phosphoribosyltransferase compare
AO356_17070 -1.4 -1.2 cytochrome B compare
AO356_22150 -1.4 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_11420 -1.4 -8.2 histidine kinase compare
AO356_22095 -1.4 -3.7 cupin compare
AO356_19925 -1.3 -7.6 AsnC family transcriptional regulator compare
AO356_07000 -1.3 -3.7 ABC transporter permease compare
AO356_09425 -1.3 -6.0 malate dehydrogenase compare
AO356_30345 -1.3 -3.4 IclR family transcriptional regulator compare
AO356_07390 -1.3 -1.0 polyribonucleotide nucleotidyltransferase compare
AO356_10345 -1.3 -2.0 RNA pyrophosphohydrolase compare
AO356_20155 -1.3 -4.5 phosphate acyltransferase compare
AO356_16070 -1.3 -4.5 poly(A) polymerase compare
AO356_03130 -1.2 -5.4 hypothetical protein compare
AO356_14315 -1.2 -10.6 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_01245 -1.2 -5.0 glycogen branching protein compare
AO356_14310 -1.2 -8.8 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_03345 -1.2 -5.0 hypothetical protein compare
AO356_00880 -1.2 -1.3 integration host factor subunit alpha compare
AO356_11055 -1.2 -2.2 long-chain acyl-CoA thioester hydrolase compare
AO356_10015 -1.2 -8.7 protein BsmA compare
AO356_28560 -1.2 -4.4 transcriptional regulator compare
AO356_03500 -1.2 -2.0 3-oxoacyl-ACP reductase compare
AO356_15925 -1.2 -2.7 ribosomal large subunit pseudouridine synthase D compare
AO356_03365 -1.2 -2.7 UDP-N-acetylglucosamine 2-epimerase compare
AO356_11670 -1.2 -3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO356_09805 -1.2 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO356_17950 -1.1 -4.6 histidine kinase compare
AO356_23250 -1.1 -3.2 hypothetical protein compare
AO356_18245 -1.1 -4.3 DeoR family transcriptional regulator compare
AO356_03135 -1.1 -5.9 LysR family transcriptional regulator compare
AO356_14400 -1.1 -4.4 polyamine ABC transporter permease compare
AO356_04965 -1.1 -1.2 ATP-dependent helicase compare
AO356_22145 -1.1 -5.4 ATP-dependent Clp protease adaptor ClpS compare
AO356_01740 -1.1 -1.1 DNA-binding protein compare
AO356_17890 -1.0 -1.6 H-NS histone compare
AO356_25750 -1.0 -1.3 GntR family transcriptional regulator compare
AO356_24245 -1.0 -2.0 siderophore-iron reductase FhuF compare
AO356_07480 -1.0 -1.1 carbamoyl phosphate synthase large subunit compare
AO356_23595 -1.0 -2.1 short-chain dehydrogenase compare
AO356_00675 -1.0 -2.1 glyoxalase compare
AO356_09490 -1.0 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_12885 -1.0 -4.9 hypothetical protein compare
AO356_20125 -1.0 -4.1 23S rRNA pseudouridylate synthase compare
AO356_24965 -1.0 -1.9 GntR family transcriptional regulator compare
AO356_08955 -1.0 -3.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_26360 -1.0 -2.7 enoyl-CoA hydratase compare
AO356_17985 -1.0 -4.2 cold-shock protein compare
AO356_11610 -1.0 -1.0 glycerol acyltransferase compare
AO356_02325 -0.9 -1.7 3-ketoacyl-CoA thiolase compare
AO356_06695 -0.9 -3.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_04055 -0.9 -1.0 hypothetical protein compare
AO356_14155 -0.9 -3.8 dethiobiotin synthetase compare
AO356_04555 -0.9 -5.8 peptidase M48 compare
AO356_28345 -0.9 -2.3 TetR family transcriptional regulator compare
AO356_03435 -0.9 -1.5 integration host factor subunit beta compare
AO356_17970 -0.9 -7.0 porin compare
AO356_05250 -0.9 -2.1 hypothetical protein compare
AO356_14150 -0.9 -4.0 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_03620 -0.9 -2.4 cytochrome C compare
AO356_18065 -0.9 -2.3 7-carboxy-7-deazaguanine synthase compare
AO356_02270 -0.9 -6.7 transcription-repair coupling factor compare
AO356_07210 -0.9 -1.5 histidine kinase compare
AO356_12725 -0.9 -1.7 recombinase XerC compare
AO356_13320 -0.9 -2.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_21515 -0.9 -1.3 antitoxin compare
AO356_12235 -0.9 -2.7 hypothetical protein compare
AO356_17200 -0.9 -5.8 histidine kinase compare
AO356_15295 -0.9 -2.4 nicotinate-nucleotide adenylyltransferase compare
AO356_02875 -0.8 -3.1 peroxiredoxin compare
AO356_11585 -0.8 -1.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_14145 -0.8 -2.1 transporter compare
AO356_02335 -0.8 -2.1 hypothetical protein compare
AO356_15380 -0.8 -4.6 hypothetical protein compare
AO356_04445 -0.8 -1.6 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_16085 -0.8 -3.2 MFS transporter compare
AO356_16635 -0.8 -2.6 hypothetical protein compare
AO356_12625 -0.8 -2.0 cytochrome C2 compare
AO356_07090 -0.8 -1.8 hypothetical protein compare
AO356_00995 -0.8 -3.6 carbon storage regulator CsrA compare
AO356_02580 -0.8 -2.3 GntR family transcriptional regulator compare
AO356_06075 -0.8 -4.2 cysteine sulfinate desulfinase compare
AO356_01100 -0.8 -3.3 glycolate oxidase iron-sulfur subunit compare
AO356_24990 -0.8 -1.6 4-oxalocrotonate tautomerase compare
AO356_11675 -0.8 -3.7 chromosome partitioning protein compare
AO356_06910 -0.8 -5.9 long-chain fatty acid--CoA ligase compare
AO356_19335 -0.8 -5.5 peptidase S41 compare
AO356_02465 -0.8 -0.8 carbonate dehydratase compare
AO356_16875 -0.8 -5.5 GntR family transcriptional regulator compare
AO356_03375 -0.8 -0.7 ExsB family protein compare
AO356_26630 -0.8 -1.6 XshC-Cox1 family protein compare
AO356_13345 -0.8 -1.8 cell division ATP-binding protein FtsE compare
AO356_09150 -0.8 -1.4 acyl carrier protein compare
AO356_00605 -0.8 -2.1 TetR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment