Experiment set8IT089 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01620 -5.6 -7.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20540 -5.5 -13.7 phosphoribosylanthranilate isomerase compare
PFLU_RS01605 -5.3 -11.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01900 -5.2 -10.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04465 -5.2 -11.1 ATP phosphoribosyltransferase compare
PFLU_RS20580 -5.0 -16.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27365 -5.0 -12.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00175 -5.0 -12.0 tryptophan synthase subunit alpha compare
PFLU_RS06055 -4.8 -2.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS11305 -4.8 -13.8 xylose isomerase conserved
PFLU_RS03995 -4.7 -2.6 hypothetical protein compare
PFLU_RS04470 -4.6 -17.3 histidinol dehydrogenase compare
PFLU_RS02590 -4.6 -12.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25645 -4.5 -4.3 acetolactate synthase small subunit compare
PFLU_RS01610 -4.5 -17.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28695 -4.5 -9.4 phosphoglycerate dehydrogenase compare
PFLU_RS25585 -4.5 -5.3 exodeoxyribonuclease V subunit alpha compare
PFLU_RS28535 -4.5 -22.2 dihydroxy-acid dehydratase compare
PFLU_RS00180 -4.5 -11.5 tryptophan synthase subunit beta compare
PFLU_RS25735 -4.4 -10.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25360 -4.4 -9.8 glutamate 5-kinase compare
PFLU_RS25640 -4.3 -17.3 ketol-acid reductoisomerase compare
PFLU_RS27370 -4.3 -16.0 anthranilate phosphoribosyltransferase compare
PFLU_RS25760 -4.3 -18.6 glucose-6-phosphate isomerase compare
PFLU_RS24765 -4.3 -23.3 2-isopropylmalate synthase compare
PFLU_RS13380 -4.3 -11.9 xylulokinase conserved
PFLU_RS10325 -4.3 -13.2 MFS transporter compare
PFLU_RS20565 -4.2 -17.7 3-isopropylmalate dehydrogenase compare
PFLU_RS20515 -4.1 -9.8 amidophosphoribosyltransferase compare
PFLU_RS24330 -4.0 -11.7 phosphogluconate dehydratase compare
PFLU_RS25715 -3.9 -14.9 RNA polymerase-binding protein DksA compare
PFLU_RS11310 -3.8 -8.1 DNA-binding transcriptional regulator conserved
PFLU_RS09055 -3.7 -10.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS27475 -3.7 -14.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS24095 -3.5 -6.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28165 -3.4 -14.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS04835 -3.3 -1.5 hypothetical protein compare
PFLU_RS15410 -3.3 -4.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS12980 -3.3 -12.4 nitrite/sulfite reductase compare
PFLU_RS01390 -3.3 -9.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS13405 -3.3 -13.6 sugar ABC transporter substrate-binding protein conserved
PFLU_RS00415 -3.2 -4.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS28390 -3.2 -8.5 methionine biosynthesis protein MetW compare
PFLU_RS18505 -3.2 -13.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS02490 -3.2 -11.2 phosphoserine phosphatase SerB compare
PFLU_RS09535 -3.2 -2.0 TIGR03750 family conjugal transfer protein compare
PFLU_RS18640 -3.0 -6.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS28385 -3.0 -11.4 homoserine O-acetyltransferase compare
PFLU_RS20510 -2.9 -12.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS12975 -2.9 -5.0 DUF934 domain-containing protein compare
PFLU_RS18665 -2.9 -5.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS22740 -2.8 -8.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS13410 -2.6 -9.4 AraC family transcriptional regulator conserved
PFLU_RS22595 -2.6 -4.4 OmpA family protein compare
PFLU_RS24320 -2.6 -4.8 response regulator transcription factor compare
PFLU_RS19170 -2.5 -5.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07910 -2.5 -1.6 type 1 fimbrial protein compare
PFLU_RS21240 -2.4 -1.4 hypothetical protein compare
PFLU_RS13895 -2.4 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS18675 -2.4 -4.9 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS02275 -2.4 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS24205 -2.3 -2.8 DNA binding protein compare
PFLU_RS07520 -2.3 -1.6 hypothetical protein compare
PFLU_RS25595 -2.3 -3.5 exodeoxyribonuclease V subunit gamma compare
PFLU_RS01625 -2.3 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS21360 -2.2 -2.4 MarR family transcriptional regulator compare
PFLU_RS07805 -2.2 -11.7 transaldolase compare
PFLU_RS14320 -2.1 -1.7 DUF2946 domain-containing protein compare
PFLU_RS25730 -2.1 -11.4 PAS domain S-box protein compare
PFLU_RS23725 -2.1 -9.7 glucose-6-phosphate dehydrogenase compare
PFLU_RS18700 -2.0 -2.1 hypothetical protein compare
PFLU_RS18615 -2.0 -2.8 NADH-quinone oxidoreductase subunit A compare
PFLU_RS05885 -1.9 -5.6 recombinase RecA compare
PFLU_RS31275 -1.9 -1.6 hypothetical protein compare
PFLU_RS28655 -1.9 -10.3 HAD family hydrolase compare
PFLU_RS13540 -1.9 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24125 -1.9 -6.1 cold-shock protein compare
PFLU_RS18625 -1.9 -6.9 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS19490 -1.8 -5.4 LacI family transcriptional regulator compare
PFLU_RS19550 -1.8 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS21495 -1.8 -2.9 TlpA family protein disulfide reductase compare
PFLU_RS08990 -1.8 -2.3 hypothetical protein compare
PFLU_RS18395 -1.7 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS03960 -1.7 -3.2 tRNA-Thr compare
PFLU_RS21580 -1.7 -2.7 MOSC domain-containing protein compare
PFLU_RS03555 -1.7 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS18635 -1.7 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS12145 -1.6 -1.8 nuclear transport factor 2 family protein compare
PFLU_RS13390 -1.6 -4.7 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS05210 -1.5 -2.6 HU family DNA-binding protein compare
PFLU_RS02825 -1.5 -1.7 phosphate starvation-inducible protein PsiF compare
PFLU_RS09305 -1.5 -9.4 hypothetical protein compare
PFLU_RS25225 -1.5 -5.3 disulfide bond formation protein B compare
PFLU_RS18620 -1.4 -4.2 NADH-quinone oxidoreductase subunit B compare
PFLU_RS13400 -1.4 -3.2 sugar ABC transporter permease compare
PFLU_RS23760 -1.4 -7.8 carbohydrate ABC transporter substrate-binding protein conserved
PFLU_RS13395 -1.4 -5.7 carbohydrate ABC transporter permease conserved
PFLU_RS01895 -1.4 -3.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS31755 -1.4 -1.4 hypothetical protein compare
PFLU_RS22725 -1.3 -2.2 transcriptional regulator compare
PFLU_RS30470 -1.3 -2.5 addiction module antidote protein compare
PFLU_RS02565 -1.3 -5.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS20335 -1.3 -2.3 hypothetical protein compare
PFLU_RS08760 -1.3 -1.9 phosphonate C-P lyase system protein PhnG compare
PFLU_RS18885 -1.3 -1.5 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS23755 -1.3 -6.9 sugar ABC transporter permease conserved
PFLU_RS02130 -1.3 -2.5 glycosyl transferase compare
PFLU_RS16310 -1.3 -1.2 hypothetical protein compare
PFLU_RS23310 -1.3 -5.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS08655 -1.3 -2.9 heme ABC transporter permease compare
PFLU_RS12755 -1.3 -3.5 periplasmic heavy metal sensor compare
PFLU_RS31840 -1.3 -1.8 hypothetical protein compare
PFLU_RS04945 -1.2 -1.9 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS30165 -1.2 -4.8 ParA family protein compare
PFLU_RS22070 -1.2 -3.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS21300 -1.2 -3.3 cysteine hydrolase compare
PFLU_RS31710 -1.2 -2.1 hypothetical protein compare
PFLU_RS10120 -1.2 -2.8 hypothetical protein compare
PFLU_RS20730 -1.2 -1.4 hypothetical protein compare
PFLU_RS16805 -1.2 -2.4 SDR family oxidoreductase compare
PFLU_RS28270 -1.2 -1.7 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS13385 -1.2 -4.6 mannitol dehydrogenase family protein conserved
PFLU_RS07215 -1.2 -4.0 hypothetical protein compare
PFLU_RS27465 -1.2 -2.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS08575 -1.1 -1.9 hypothetical protein compare
PFLU_RS27380 -1.1 -6.3 anthranilate synthase component I compare
PFLU_RS22105 -1.1 -2.5 cysteine synthase CysM compare
PFLU_RS28325 -1.1 -5.1 energy transducer TonB compare
PFLU_RS03035 -1.1 -2.4 50S ribosomal protein L11 methyltransferase compare
PFLU_RS18670 -1.1 -1.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS04660 -1.1 -2.9 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS21665 -1.1 -4.2 MinD/ParA family protein compare
PFLU_RS14995 -1.1 -1.9 response regulator transcription factor compare
PFLU_RS00060 -1.1 -2.1 DNA-3-methyladenine glycosylase I compare
PFLU_RS21060 -1.1 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS19720 -1.1 -1.4 hypothetical protein compare
PFLU_RS24160 -1.0 -4.2 HAMP domain-containing protein compare
PFLU_RS04330 -1.0 -7.8 TIGR02099 family protein compare
PFLU_RS23595 -1.0 -5.9 LacI family DNA-binding transcriptional regulator compare
PFLU_RS12210 -1.0 -2.0 hypothetical protein compare
PFLU_RS03765 -1.0 -4.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS25800 -1.0 -4.2 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS29875 -1.0 -6.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS09190 -1.0 -1.7 hypothetical protein compare
PFLU_RS08665 -1.0 -2.3 cytochrome c maturation protein CcmE compare
PFLU_RS29880 -1.0 -5.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS08615 -1.0 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS29340 -1.0 -3.9 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS23750 -1.0 -5.4 carbohydrate ABC transporter permease compare
PFLU_RS04435 -1.0 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20015 -1.0 -2.2 transporter compare
PFLU_RS26565 -1.0 -1.3 rRNA maturation RNase YbeY compare
PFLU_RS07665 -1.0 -1.4 type I DNA topoisomerase compare
PFLU_RS10090 -0.9 -1.4 redox-sensitive transcriptional activator SoxR compare
PFLU_RS07690 -0.9 -4.1 helix-turn-helix transcriptional regulator compare
PFLU_RS10430 -0.9 -1.8 peptidase compare
PFLU_RS29275 -0.9 -3.3 DUF484 family protein compare
PFLU_RS05910 -0.9 -0.9 response regulator transcription factor compare
PFLU_RS16300 -0.9 -2.7 hypothetical protein compare
PFLU_RS30070 -0.9 -1.7 hypothetical protein compare
PFLU_RS23940 -0.9 -1.9 hypothetical protein compare
PFLU_RS03770 -0.9 -5.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS15205 -0.9 -1.6 ribose ABC transporter permease compare
PFLU_RS00960 -0.9 -2.8 sulfate ABC transporter ATP-binding protein compare
PFLU_RS31490 -0.9 -1.2 hypothetical protein compare
PFLU_RS19610 -0.9 -2.1 hypothetical protein compare
PFLU_RS18350 -0.9 -1.1 GIY-YIG nuclease family protein compare
PFLU_RS27375 -0.9 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS29090 -0.9 -3.8 exopolyphosphatase compare
PFLU_RS19935 -0.9 -1.2 type II secretion system protein GspF compare
PFLU_RS18530 -0.9 -2.5 DNA translocase FtsK compare
PFLU_RS24335 -0.9 -5.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS01765 -0.9 -3.7 histidine utilization repressor compare
PFLU_RS26490 -0.9 -1.6 cation diffusion facilitator family transporter compare
PFLU_RS20955 -0.9 -1.2 DUF1028 domain-containing protein compare
PFLU_RS23460 -0.9 -2.1 antibiotic biosynthesis monooxygenase compare
PFLU_RS24090 -0.9 -2.0 Holliday junction branch migration protein RuvA compare
PFLU_RS27690 -0.9 -1.2 response regulator compare
PFLU_RS20625 -0.8 -1.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS31440 -0.8 -1.0 hypothetical protein compare
PFLU_RS15250 -0.8 -3.8 HAMP domain-containing protein compare
PFLU_RS27840 -0.8 -1.6 hypothetical protein compare
PFLU_RS07275 -0.8 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18225 -0.8 -1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS00210 -0.8 -0.8 OsmC family protein compare
PFLU_RS12205 -0.8 -2.7 DNA binding protein compare
PFLU_RS14005 -0.8 -1.4 hypothetical protein compare
PFLU_RS20330 -0.8 -1.7 cold-shock protein compare
PFLU_RS07785 -0.8 -5.2 VacJ family lipoprotein compare
PFLU_RS28665 -0.8 -5.2 threonine ammonia-lyase, biosynthetic compare
PFLU_RS05595 -0.8 -3.5 alpha/beta fold hydrolase compare
PFLU_RS04440 -0.8 -4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS28450 -0.8 -2.1 cell division ATP-binding protein FtsE compare
PFLU_RS25405 -0.8 -2.7 VOC family protein compare
PFLU_RS28315 -0.8 -0.7 response regulator compare
PFLU_RS18175 -0.8 -1.8 sugar ABC transporter substrate-binding protein compare
PFLU_RS13225 -0.8 -2.2 hypothetical protein compare
PFLU_RS18645 -0.8 -1.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS14760 -0.8 -1.4 SDR family NAD(P)-dependent oxidoreductase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Xylose across organisms