Experiment set8IT089 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Xylose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS11620 +2.9 21.8 FadR family transcriptional regulator compare
PFLU_RS22940 +2.6 20.8 IclR family transcriptional regulator conserved
PFLU_RS01670 +2.1 15.6 protein-export chaperone SecB compare
PFLU_RS10765 +1.8 12.4 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS26290 +1.6 2.0 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS13665 +1.4 2.4 MarR family transcriptional regulator compare
PFLU_RS21795 +1.4 12.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS11625 +1.3 9.3 dihydroxy-acid dehydratase conserved
PFLU_RS21695 +1.3 6.9 flagellar biosynthesis protein FlhB compare
PFLU_RS21705 +1.3 8.3 flagellar biosynthesis protein FliQ compare
PFLU_RS25815 +1.3 2.3 transcription termination/antitermination protein NusA compare
PFLU_RS05690 +1.2 2.9 Grx4 family monothiol glutaredoxin compare
PFLU_RS21760 +1.2 9.1 flagellar protein export ATPase FliI compare
PFLU_RS21660 +1.2 9.4 RNA polymerase sigma factor FliA compare
PFLU_RS22190 +1.2 0.9 hypothetical protein compare
PFLU_RS23175 +1.2 5.1 flagellar basal body rod protein FlgC compare
PFLU_RS21850 +1.1 8.6 flagellar basal body L-ring protein FlgH compare
PFLU_RS15310 +1.1 2.0 YgdI/YgdR family lipoprotein compare
PFLU_RS21675 +1.1 9.4 flagellar biosynthesis protein FlhA compare
PFLU_RS22250 +1.1 2.2 hypothetical protein compare
PFLU_RS21765 +1.1 6.4 flagellar assembly protein FliH compare
PFLU_RS23195 +1.1 9.0 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS03755 +1.1 7.9 PDZ domain-containing protein compare
PFLU_RS15910 +1.1 1.7 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS02775 +1.1 1.6 urease accessory protein UreF compare
PFLU_RS08165 +1.1 2.2 acyl carrier protein compare
PFLU_RS21725 +1.0 6.4 flagellar motor switch protein FliM compare
PFLU_RS21860 +1.0 4.6 flagellar basal body rod protein FlgF compare
PFLU_RS13795 +1.0 3.7 hypothetical protein compare
PFLU_RS18410 +1.0 3.0 response regulator compare
PFLU_RS21835 +1.0 8.5 flagellar hook-associated protein FlgK compare
PFLU_RS21700 +1.0 5.5 flagellar type III secretion system protein FliR compare
PFLU_RS23180 +1.0 5.9 flagellar basal body rod protein FlgB compare
PFLU_RS07230 +1.0 7.1 RNA polymerase sigma factor RpoE compare
PFLU_RS01875 +1.0 2.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS02980 +1.0 2.0 precorrin-8X methylmutase compare
PFLU_RS21775 +1.0 7.1 flagellar basal body M-ring protein FliF compare
PFLU_RS23165 +1.0 8.4 flagellar hook protein FlgE compare
PFLU_RS19290 +0.9 5.2 SMP-30/gluconolactonase/LRE family protein conserved
PFLU_RS01665 +0.9 2.7 glutaredoxin 3 compare
PFLU_RS21780 +0.9 2.5 flagellar hook-basal body complex protein FliE compare
PFLU_RS23205 +0.9 6.8 flagellar protein FlgN compare
PFLU_RS18515 +0.9 1.2 fluoride efflux transporter CrcB compare
PFLU_RS13715 +0.9 1.4 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS19300 +0.9 4.4 TRAP transporter small permease compare
PFLU_RS21770 +0.9 5.1 flagellar motor switch protein FliG compare
PFLU_RS19280 +0.9 6.3 OprD family porin compare
PFLU_RS21755 +0.9 6.1 flagella biosynthesis chaperone FliJ compare
PFLU_RS30530 +0.9 5.1 acetyltransferase compare
PFLU_RS05315 +0.8 1.9 GntR family transcriptional regulator compare
PFLU_RS11845 +0.8 1.9 DUF4880 domain-containing protein compare
PFLU_RS21855 +0.8 5.2 flagellar basal-body rod protein FlgG compare
PFLU_RS00695 +0.8 1.0 DUF2789 domain-containing protein compare
PFLU_RS31200 +0.8 4.0 hypothetical protein compare
PFLU_RS22645 +0.8 6.1 EamA family transporter compare
PFLU_RS08650 +0.8 1.3 heme exporter protein CcmB compare
PFLU_RS21735 +0.8 5.8 flagellar hook-length control protein FliK compare
PFLU_RS18725 +0.8 1.1 alpha/beta hydrolase compare
PFLU_RS02875 +0.8 2.5 urease subunit gamma compare
PFLU_RS24130 +0.8 2.0 protein SlyX compare
PFLU_RS01960 +0.8 2.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS21710 +0.8 5.1 flagellar type III secretion system pore protein FliP compare
PFLU_RS04315 +0.8 3.1 rod shape-determining protein MreD compare
PFLU_RS21730 +0.8 5.1 flagellar basal body-associated protein FliL compare
PFLU_RS17370 +0.8 2.5 hypothetical protein compare
PFLU_RS21845 +0.8 4.1 flagellar basal body P-ring protein FlgI compare
PFLU_RS18095 +0.8 2.9 GlxA family transcriptional regulator compare
PFLU_RS26925 +0.8 1.8 hypothetical protein compare
PFLU_RS11760 +0.8 1.6 GlxA family transcriptional regulator compare
PFLU_RS07860 +0.7 2.3 hypothetical protein compare
PFLU_RS19285 +0.7 4.5 NAD(P)-dependent oxidoreductase compare
PFLU_RS23895 +0.7 1.8 DUF1289 domain-containing protein compare
PFLU_RS30525 +0.7 5.4 SDR family oxidoreductase compare
PFLU_RS21840 +0.7 4.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS18680 +0.7 2.5 toxin compare
PFLU_RS21830 +0.7 6.2 flagellar hook-associated protein 3 compare
PFLU_RS10045 +0.7 1.9 hypothetical protein compare
PFLU_RS21810 +0.7 6.2 flagellar filament capping protein FliD compare
PFLU_RS21655 +0.7 3.3 response regulator compare
PFLU_RS13975 +0.7 1.9 hypothetical protein compare
PFLU_RS07525 +0.7 1.4 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS07195 +0.7 2.0 hypothetical protein compare
PFLU_RS29485 +0.7 1.7 DUF4870 domain-containing protein compare
PFLU_RS14550 +0.7 3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS19640 +0.7 2.5 5-oxoprolinase subunit PxpA compare
PFLU_RS25120 +0.7 1.0 response regulator compare
PFLU_RS13750 +0.7 1.1 hypothetical protein compare
PFLU_RS03055 +0.7 2.6 methyl-accepting chemotaxis protein compare
PFLU_RS09670 +0.7 1.5 integrating conjugative element protein compare
PFLU_RS25785 +0.7 2.6 BON domain-containing protein compare
PFLU_RS28285 +0.7 1.4 hypothetical protein compare
PFLU_RS17340 +0.7 1.8 AAA family ATPase compare
PFLU_RS17815 +0.7 1.8 response regulator compare
PFLU_RS20870 +0.7 1.3 hypothetical protein compare
PFLU_RS03710 +0.7 3.2 nuclear transport factor 2 family protein compare
PFLU_RS01095 +0.7 1.8 ribbon-helix-helix protein, CopG family compare
PFLU_RS12715 +0.7 1.2 fumarylacetoacetate hydrolase family protein compare
PFLU_RS11830 +0.7 1.7 hypothetical protein compare
PFLU_RS07945 +0.6 2.5 NADP oxidoreductase compare
PFLU_RS04150 +0.6 2.6 DUF1043 family protein compare
PFLU_RS15165 +0.6 1.0 RidA family protein compare
PFLU_RS28650 +0.6 2.8 RNA pyrophosphohydrolase compare
PFLU_RS24370 +0.6 2.0 NAD(P)H nitroreductase compare
PFLU_RS07235 +0.6 1.4 sigma factor AlgU negative regulatory protein compare
PFLU_RS04075 +0.6 0.5 hypothetical protein compare
PFLU_RS19795 +0.6 2.5 GNAT family N-acetyltransferase compare
PFLU_RS03835 +0.6 2.6 type IV pilus modification protein PilV compare
PFLU_RS19015 +0.6 3.3 anti-sigma factor compare
PFLU_RS23070 +0.6 0.4 50S ribosomal protein L32 compare
PFLU_RS31780 +0.6 1.4 hypothetical protein compare
PFLU_RS24695 +0.6 1.0 PTS glucose transporter subunit IIB compare
PFLU_RS08660 +0.6 1.1 heme exporter protein CcmD compare
PFLU_RS11515 +0.6 2.6 DUF1330 domain-containing protein compare
PFLU_RS11505 +0.6 1.4 ABC transporter substrate-binding protein compare
PFLU_RS17895 +0.6 2.4 glycosyltransferase family 2 protein compare
PFLU_RS02860 +0.6 1.2 urease subunit beta compare
PFLU_RS08180 +0.6 2.5 ketoacyl-ACP synthase III compare
PFLU_RS14670 +0.6 1.7 GNAT family N-acetyltransferase compare
PFLU_RS00520 +0.6 1.9 DUF2388 domain-containing protein compare
PFLU_RS05340 +0.6 1.2 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS09550 +0.6 1.8 hypothetical protein compare
PFLU_RS10340 +0.6 1.0 hypothetical protein compare
PFLU_RS23590 +0.6 0.9 gluconokinase compare
PFLU_RS23885 +0.6 1.7 transposase compare
PFLU_RS06310 +0.6 3.2 sigma E protease regulator RseP compare
PFLU_RS15950 +0.6 2.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS17525 +0.6 1.4 NUDIX domain-containing protein compare
PFLU_RS25925 +0.6 1.2 RnfH family protein compare
PFLU_RS15765 +0.6 1.9 general secretion pathway protein GspK compare
PFLU_RS08625 +0.6 1.5 molybdenum cofactor biosynthesis protein B compare
PFLU_RS12800 +0.6 1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01010 +0.6 2.4 ABC transporter permease compare
PFLU_RS21790 +0.6 3.3 PAS domain-containing protein compare
PFLU_RS29255 +0.6 2.1 iron donor protein CyaY compare
PFLU_RS25865 +0.6 1.3 YhbY family RNA-binding protein compare
PFLU_RS19445 +0.6 1.9 FadR family transcriptional regulator compare
PFLU_RS14690 +0.6 1.6 hypothetical protein compare
PFLU_RS16960 +0.5 1.7 LysR family transcriptional regulator compare
PFLU_RS11900 +0.5 2.1 type II secretion system protein GspF compare
PFLU_RS26595 +0.5 0.8 lipoprotein compare
PFLU_RS12615 +0.5 1.8 oxidoreductase compare
PFLU_RS00190 +0.5 0.8 DUF883 domain-containing protein compare
PFLU_RS01885 +0.5 1.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS29400 +0.5 0.6 DUF1127 domain-containing protein compare
PFLU_RS17855 +0.5 1.6 YjbF family lipoprotein compare
PFLU_RS21600 +0.5 1.5 response regulator transcription factor compare
PFLU_RS14450 +0.5 1.0 AzlD domain-containing protein compare
PFLU_RS09180 +0.5 2.2 hypothetical protein compare
PFLU_RS15850 +0.5 1.7 hypothetical protein compare
PFLU_RS21595 +0.5 2.2 sensor histidine kinase compare
PFLU_RS00150 +0.5 3.0 2-dehydro-3-deoxygalactonokinase compare
PFLU_RS19255 +0.5 2.0 NAD(P)-dependent oxidoreductase compare
PFLU_RS15865 +0.5 2.7 cytochrome P450 compare
PFLU_RS29390 +0.5 2.1 YkgJ family cysteine cluster protein compare
PFLU_RS20945 +0.5 2.3 acyl-CoA dehydrogenase compare
PFLU_RS31470 +0.5 1.7 hypothetical protein compare
PFLU_RS02790 +0.5 0.8 TetR family transcriptional regulator compare
PFLU_RS15040 +0.5 1.4 glyoxalase compare
PFLU_RS23380 +0.5 1.2 HAD-IB family hydrolase compare
PFLU_RS02370 +0.5 3.4 glycosyltransferase compare
PFLU_RS08545 +0.5 1.7 GAF domain-containing protein compare
PFLU_RS08485 +0.5 1.2 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS01835 +0.5 3.7 glucan biosynthesis protein G compare
PFLU_RS04845 +0.5 1.6 hypothetical protein compare
PFLU_RS15795 +0.5 0.8 hypothetical protein compare
PFLU_RS27755 +0.5 1.8 glutathione S-transferase compare
PFLU_RS18045 +0.5 2.4 AraC family transcriptional regulator compare
PFLU_RS15240 +0.5 2.2 tetratricopeptide repeat protein compare
PFLU_RS12650 +0.5 1.4 hypothetical protein compare
PFLU_RS03570 +0.5 0.8 hypothetical protein compare
PFLU_RS30615 +0.5 1.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS07760 +0.5 1.7 heavy metal response regulator transcription factor compare
PFLU_RS09495 +0.5 2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS20365 +0.5 3.7 LacI family DNA-binding transcriptional regulator compare
PFLU_RS03860 +0.5 1.8 hypothetical protein compare
PFLU_RS26410 +0.5 1.7 GNAT family N-acetyltransferase compare
PFLU_RS29250 +0.5 1.2 DUF1289 domain-containing protein compare
PFLU_RS23170 +0.5 2.2 flagellar hook assembly protein FlgD compare
PFLU_RS10405 +0.5 1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS26145 +0.5 0.9 hypothetical protein compare
PFLU_RS09540 +0.5 2.0 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS19915 +0.5 0.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS07255 +0.5 1.4 sulfurtransferase TusA family protein compare
PFLU_RS00435 +0.5 3.7 PAS domain-containing protein compare
PFLU_RS31435 +0.5 1.8 ABC transporter ATP-binding protein compare
PFLU_RS17545 +0.5 0.6 DUF465 domain-containing protein compare
PFLU_RS02080 +0.5 2.2 3-oxoacyl-ACP reductase FabG compare
PFLU_RS12805 +0.5 1.8 RidA family protein compare
PFLU_RS26425 +0.5 2.9 DEAD/DEAH box helicase compare
PFLU_RS21785 +0.5 2.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS31110 +0.5 2.5 recombinase family protein compare
PFLU_RS21530 +0.5 3.8 transporter substrate-binding domain-containing protein compare
PFLU_RS21615 +0.5 2.6 chemotaxis protein CheW compare
PFLU_RS19065 +0.5 2.6 YebC/PmpR family DNA-binding transcriptional regulator compare
PFLU_RS29285 +0.5 1.1 HAD-IA family hydrolase compare
PFLU_RS25040 +0.5 1.6 DUF3077 domain-containing protein compare
PFLU_RS20920 +0.5 1.6 FadR family transcriptional regulator compare
PFLU_RS13950 +0.5 1.2 hypothetical protein compare
PFLU_RS05105 +0.5 1.8 tetratricopeptide repeat protein compare
PFLU_RS13525 +0.5 2.1 NAD(P)H-dependent oxidoreductase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens SBW25-INTG

For carbon source D-Xylose across organisms