Experiment set8IT089 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Sodium acetate 100 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07950 +1.3 2.1 hypothetical protein compare
PGA1_c29180 +1.2 2.7 peroxidase-like protein compare
PGA1_c12440 +1.1 3.1 sulphur oxidation protein SoxZ compare
PGA1_c13410 +1.1 2.5 phosphoribosylformylglycinamidine (FGAM) synthase PurS compare
PGA1_c06960 +1.0 2.6 Uncharacterized protein conserved in bacteria compare
PGA1_c08590 +1.0 7.2 heme NO binding domain-containing protein compare
PGA1_c32930 +0.9 1.7 ribosome-binding factor A compare
PGA1_65p00150 +0.9 3.3 Protein of unknown function (DUF2886). compare
PGA1_c09460 +0.9 1.9 Uncharacterized conserved small protein compare
PGA1_c07710 +0.9 1.8 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c27660 +0.9 1.1 hypothetical protein compare
PGA1_262p02010 +0.9 1.9 Uncharacterized conserved protein compare
PGA1_c03290 +0.8 3.0 transcription elongation factor GreA compare
PGA1_c10470 +0.8 1.4 hypothetical protein compare
PGA1_c05170 +0.8 2.8 penicillinase repressor blaI/mecI-like protein compare
PGA1_262p00450 +0.8 1.6 glucose transporter, ATPase component (from data) compare
PGA1_262p01165 +0.8 1.6 hypothetical protein compare
PGA1_c08600 +0.8 6.0 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c06480 +0.8 0.8 hypothetical protein compare
PGA1_c17660 +0.8 3.0 hypothetical protein compare
PGA1_c09290 +0.8 3.2 WGR domain. compare
PGA1_c05420 +0.8 1.2 glucokinase (EC 2.7.1.2) (from data) compare
PGA1_c28030 +0.7 2.9 Panthothenate kinase compare
PGA1_c34880 +0.7 5.9 putative response regulator compare
PGA1_c34480 +0.7 2.2 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c15660 +0.7 3.0 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c25070 +0.7 2.3 H-type lectin domain. compare
PGA1_c23800 +0.7 2.6 hypothetical protein compare
PGA1_c01670 +0.7 1.6 hypothetical protein compare
PGA1_c32680 +0.7 3.1 putative glutathione S-transferase compare
PGA1_c26360 +0.6 2.2 cold shock protein compare
PGA1_65p00160 +0.6 1.6 Bacterial putative lipoprotein (DUF940). compare
PGA1_c13110 +0.6 1.8 putative nitrilotriacetate monooxygenase component B compare
PGA1_c29730 +0.6 4.2 Predicted membrane protein compare
PGA1_c11470 +0.6 2.7 acetyltransferase domain-containing protein compare
PGA1_c12300 +0.6 3.8 glucans biosynthesis glucosyltransferase H compare
PGA1_c28370 +0.6 2.9 putative homoserine/homoserine lactone efflux protein compare
PGA1_c03250 +0.6 2.0 molybdopterin-guanine dinucleotide biosynthesis protein B compare
PGA1_c34890 +0.6 4.1 putative histidine-containing phosphotransfer protein compare
PGA1_65p00210 +0.6 1.2 hypothetical protein compare
PGA1_c11810 +0.6 1.3 hypothetical protein compare
PGA1_c31180 +0.6 2.9 Uncharacterized protein conserved in bacteria compare
PGA1_c23720 +0.6 1.7 glutathione reductase Gor compare
PGA1_c19340 +0.6 2.0 aldehyde dehydrogenase-like protein compare
PGA1_c35270 +0.6 2.2 Uncharacterized conserved small protein compare
PGA1_c06400 +0.6 1.7 putative antibiotic acetyltransferase compare
PGA1_c13420 +0.6 0.7 phosphoribosylformylglycinamidine synthase 1 compare
PGA1_c15290 +0.6 0.9 Lactoylglutathione lyase and related lyases compare
PGA1_c07350 +0.6 1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA compare
PGA1_262p00710 +0.6 1.2 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c20140 +0.6 2.6 putative arginine-tRNA-protein transferase compare
PGA1_c07465 +0.6 1.8 putative dksA/traR C4-type zinc finger protein compare
PGA1_c04900 +0.6 1.5 peptidyl-tRNA hydrolase Pth compare
PGA1_c26780 +0.6 1.5 cold shock protein CspA compare
PGA1_c31230 +0.6 0.9 hypothetical protein compare
PGA1_c34390 +0.6 2.5 spermidine/putrescine import ATP-binding protein PotA compare
PGA1_262p00770 +0.5 1.3 putative lytic murein transglycosylase compare
PGA1_c11460 +0.5 1.4 hypothetical protein compare
PGA1_c02540 +0.5 2.5 Uncharacterized conserved protein compare
PGA1_c18050 +0.5 1.8 Uncharacterized conserved protein compare
PGA1_c19180 +0.5 0.5 cytochrome c-type biogenesis protein CycH compare
PGA1_c25950 +0.5 1.9 putative biopolymer transport protein compare
PGA1_c12930 +0.5 2.3 hypothetical protein compare
PGA1_c32560 +0.5 2.3 high-affinity branched-chain amino acid transport ATP-binding protein compare
PGA1_c07750 +0.5 2.2 histidinol dehydrogenase HisD compare
PGA1_262p01320 +0.5 1.3 Uncharacterized protein conserved in bacteria compare
PGA1_c20535 +0.5 2.2 hypothetical protein compare
PGA1_c06630 +0.5 0.9 hypothetical protein compare
PGA1_262p01030 +0.5 1.8 dipeptide transport system permease protein DppB compare
PGA1_c28390 +0.5 2.4 hypothetical protein compare
PGA1_c33490 +0.5 0.8 inositol-1-monophosphatase SuhB compare
PGA1_c33100 +0.5 2.5 protein RarD compare
PGA1_c30410 +0.5 0.7 HTH-type transcriptional regulator, AsnC family compare
PGA1_c24760 +0.5 2.4 hypothetical protein compare
PGA1_c22260 +0.5 2.3 hypothetical protein compare
PGA1_c17170 +0.5 1.4 hypothetical protein compare
PGA1_78p00210 +0.5 1.2 putative oxidoreductase compare
PGA1_c18580 +0.5 1.1 hypothetical protein compare
PGA1_c20600 +0.5 1.6 Protein of unknown function (DUF1826). compare
PGA1_c01160 +0.5 3.6 sensor protein ChvG compare
PGA1_c04290 +0.5 2.5 phosphonates transport ATP-binding protein PhnL compare
PGA1_c26810 +0.5 1.8 phenylacetic acid degradation protein PaaI compare
PGA1_c13280 +0.5 1.5 hypothetical protein compare
PGA1_65p00350 +0.5 2.9 hemolysin-like protein compare
PGA1_c18520 +0.5 1.8 Uncharacterized protein conserved in bacteria compare
PGA1_c20250 +0.5 1.6 Predicted integral membrane protein compare
PGA1_c33220 +0.5 1.9 hemimethylated DNA-binding protein, YccV-like compare
PGA1_262p01580 +0.5 1.1 putative metal ion uptake regulator compare
PGA1_262p02170 +0.5 1.4 putative chemoreceptor glutamine deamidase CheD compare
PGA1_c08360 +0.5 1.6 Rhodanese-related sulfurtransferase compare
PGA1_c13510 +0.5 1.2 hypothetical protein compare
PGA1_c00610 +0.5 0.9 acetyltransferase, GNAT family compare
PGA1_c33240 +0.5 2.0 putative ATP-dependent protease La compare
PGA1_c33190 +0.4 2.2 putative anti-sigma-B factor antagonist compare
PGA1_c14800 +0.4 1.1 nitrogen regulation protein NtrY compare
PGA1_65p00450 +0.4 1.4 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c06450 +0.4 1.8 short-chain dehydrogenases/reductase domain-containing protein compare
PGA1_c29740 +0.4 1.3 hypothetical protein compare
PGA1_c34570 +0.4 3.1 hypothetical protein compare
PGA1_c12920 +0.4 1.5 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c06650 +0.4 1.5 transcriptional regulator, GntR family compare
PGA1_c07850 +0.4 1.5 transcriptional regulator, lacI family compare
PGA1_c33600 +0.4 0.7 hypothetical protein compare
PGA1_c35060 +0.4 1.1 inner membrane protein compare
PGA1_c02740 +0.4 2.1 sn-glycerol-3-phosphate import ATP-binding protein UgbC compare
PGA1_c15130 +0.4 2.0 hypothetical protein compare
PGA1_c21630 +0.4 2.4 putative transcriptional regulator compare
PGA1_c08890 +0.4 1.6 putative capsule polysaccharide export outer membrane protein compare
PGA1_65p00040 +0.4 1.8 RTX toxins and related Ca2+-binding proteins compare
PGA1_c31880 +0.4 3.8 signal transduction histidine kinase compare
PGA1_c24060 +0.4 1.3 Predicted small secreted protein compare
PGA1_c09150 +0.4 2.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA compare
PGA1_c10020 +0.4 1.4 Putative protein-S-isoprenylcysteine methyltransferase compare
PGA1_c21900 +0.4 0.9 Uncharacterized conserved small protein compare
PGA1_c27240 +0.4 0.8 hypothetical protein compare
PGA1_c10270 +0.4 2.7 hypothetical protein compare
PGA1_c03270 +0.4 1.8 molybdopterin molybdenumtransferase MoeA compare
PGA1_c22350 +0.4 2.1 hypothetical protein compare
PGA1_262p00830 +0.4 2.1 hypothetical protein compare
PGA1_c34860 +0.4 2.4 33 kDa chaperonin (heat shock protein 33) compare
PGA1_c14190 +0.4 2.7 putative transcriptional regulator, AraC family compare
PGA1_c07650 +0.4 2.4 hypothetical protein compare
PGA1_c17200 +0.4 1.4 transcriptional regulator, TetR family compare
PGA1_262p02040 +0.4 1.7 putative transcriptional regulator, MerR family compare
PGA1_c29240 +0.4 1.5 hypothetical protein compare
PGA1_262p00160 +0.4 1.1 Branched-chain amino acid transport protein (AzlD). compare
PGA1_c30900 +0.4 0.7 hypothetical protein compare
PGA1_c14960 +0.4 1.1 putative transcriptional regulator compare
PGA1_65p00170 +0.4 1.6 putative capsular polysaccharide biosynthesis protein compare
PGA1_c12290 +0.4 1.4 Poly(3-hydroxybutyrate) depolymerase compare
PGA1_c27000 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
PGA1_c11690 +0.4 1.5 thioesterase domain-containing protein compare
PGA1_c23010 +0.4 1.5 hypothetical protein compare
PGA1_c03060 +0.4 2.0 aspartate carbamoyltransferase PyrB compare
PGA1_c12200 +0.4 1.8 tRNA 2-selenouridine synthase SelU compare
PGA1_c08990 +0.4 1.0 hypothetical protein compare
PGA1_c34190 +0.4 1.6 methyltransferase-like protein compare
PGA1_c27450 +0.4 1.5 Demethylmenaquinone methyltransferase compare
PGA1_c09590 +0.4 1.8 uncharacterized protein YhiN compare
PGA1_c20920 +0.4 1.2 granule associated protein (phasin) compare
PGA1_262p01700 +0.4 1.8 putative ABC transporter, solute-binding protein compare
PGA1_c29120 +0.4 0.6 hypothetical protein compare
PGA1_c26610 +0.4 1.4 amino acid ABC transporter, substrate-binding protein compare
PGA1_c34140 +0.4 1.8 histone deacetylase compare
PGA1_c22560 +0.4 1.9 hypothetical protein compare
PGA1_c04940 +0.4 1.6 Lipid A 3-O-deacylase (PagL). compare
PGA1_c21820 +0.4 1.1 5-formyltetrahydrofolate cycloligase-like protein compare
PGA1_262p00080 +0.4 1.5 hypothetical protein compare
PGA1_c17030 +0.4 0.7 peptidoglycan binding domain-containing protein compare
PGA1_c04620 +0.4 1.4 peptidyl-prolyl cis-trans isomerase, FKBP-type compare
PGA1_c17720 +0.4 0.9 putative phage cell wall peptidase, NlpC/P60 family compare
PGA1_c11670 +0.4 2.0 Uncharacterized conserved protein compare
PGA1_c13720 +0.4 2.0 hypothetical protein compare
PGA1_c19730 +0.4 1.2 Uncharacterized homolog of Blt101 compare
PGA1_c25850 +0.4 1.8 hypothetical protein compare
PGA1_c13100 +0.4 1.7 aldo / keto reductase compare
PGA1_c15720 +0.4 1.7 putative glycine cleavage system transcriptional activator compare
PGA1_262p00570 +0.4 0.9 hypothetical protein compare
PGA1_c04730 +0.4 1.4 hypothetical protein compare
PGA1_c08880 +0.4 2.2 capsule polysaccharide export protein KpsC compare
PGA1_c34940 +0.4 1.1 Putative sterol carrier protein compare
PGA1_78p00060 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
PGA1_262p01630 +0.4 1.1 hypothetical protein compare
PGA1_c30130 +0.4 1.5 putative universal stress protein compare
PGA1_c26720 +0.4 0.9 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
PGA1_c16790 +0.4 1.3 putative cold shock protein compare
PGA1_c05210 +0.4 2.3 sn-glycerol-3-phosphate import ATP-binding protein UgbC compare
PGA1_c28600 +0.4 1.0 tRNA-Met compare
PGA1_c26130 +0.4 1.6 hypothetical protein compare
PGA1_c12370 +0.4 2.0 YeeE/YedE family (DUF395). compare
PGA1_c22410 +0.4 2.1 major capsid protein compare
PGA1_262p01530 +0.4 1.3 transcriptional regulator, GntR family compare
PGA1_c27800 +0.4 2.1 L-aspartate oxidase NadB compare
PGA1_c03930 +0.4 1.1 Predicted permeases compare
PGA1_c34010 +0.4 1.2 glutathione S-transferase-like protein compare
PGA1_c23070 +0.3 1.6 putative ribose transport system permease protein compare
PGA1_c22510 +0.3 1.2 hypothetical protein compare
PGA1_262p00560 +0.3 1.4 uracil DNA glycosylase-like protein compare
PGA1_c01830 +0.3 1.1 Uncharacterized conserved small protein compare
PGA1_c31720 +0.3 2.0 hypothetical protein compare
PGA1_c15590 +0.3 3.0 putative transcriptional activator protein compare
PGA1_262p00490 +0.3 1.2 hypothetical protein compare
PGA1_c18130 +0.3 1.1 transglycosylase-like protein compare
PGA1_c17760 +0.3 1.6 gene transfer agent (GTA) protein compare
PGA1_c24900 +0.3 1.8 Predicted permease, DMT superfamily compare
PGA1_c34300 +0.3 2.1 hydantoinase / oxoprolinase family protein compare
PGA1_65p00310 +0.3 0.8 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_c25040 +0.3 2.1 alpha/beta hydrolase domain-containing protein compare
PGA1_c24700 +0.3 1.5 pyrroline-5-carboxylate reductase ProC compare
PGA1_c26110 +0.3 1.9 antibiotic biosynthesis monooxygenase-like protein compare
PGA1_c36450 +0.3 1.4 putative DNA-binding protein compare
PGA1_262p01970 +0.3 1.5 putative transcriptional regulator, TetR family compare
PGA1_c06320 +0.3 1.3 peptidase, M16 family compare
PGA1_c31270 +0.3 3.0 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c08780 +0.3 0.8 hypothetical protein compare
PGA1_78p00030 +0.3 0.9 putative multicopper oxidase compare
PGA1_c29590 +0.3 1.2 hypothetical protein compare
PGA1_c35620 +0.3 0.8 flagellar motor switch protein FliN compare
PGA1_c09030 +0.3 1.2 phosphomethylpyrimidine kinase ThiD compare
PGA1_c22480 +0.3 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in stress experiments

For stress Sodium acetate across organisms