Experiment set8IT088 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS20355 -9.1 -6.3 colicin V production protein compare
BWI76_RS11965 -8.9 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20350 -8.6 -8.4 amidophosphoribosyltransferase compare
BWI76_RS04160 -8.1 -7.9 phosphoserine phosphatase compare
BWI76_RS25115 -8.1 -9.7 argininosuccinate synthase compare
BWI76_RS04465 -7.8 -5.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00855 -7.8 -7.6 argininosuccinate lyase compare
BWI76_RS00805 -7.7 -7.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS24285 -7.5 -9.0 cystathionine beta-lyase compare
BWI76_RS18920 -7.4 -5.1 ATP phosphoribosyltransferase compare
BWI76_RS05835 -7.3 -5.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS04470 -7.3 -8.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS04670 -7.3 -10.0 3-isopropylmalate dehydratase large subunit compare
BWI76_RS27385 -7.3 -7.1 orotate phosphoribosyltransferase compare
BWI76_RS04250 -7.2 -8.6 homoserine kinase compare
BWI76_RS00785 -7.0 -6.9 cystathionine gamma-synthase compare
BWI76_RS23220 -7.0 -9.6 amino-acid N-acetyltransferase compare
BWI76_RS02995 -7.0 -9.6 aspartate carbamoyltransferase compare
BWI76_RS18950 -6.9 -4.4 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18940 -6.9 -6.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS18925 -6.8 -8.1 histidinol dehydrogenase compare
BWI76_RS00835 -6.8 -14.6 phosphoenolpyruvate carboxylase compare
BWI76_RS23360 -6.8 -4.7 diaminopimelate decarboxylase compare
BWI76_RS04255 -6.7 -10.3 threonine synthase compare
BWI76_RS04685 -6.7 -11.3 putative leucine operon leader peptide compare
BWI76_RS21475 -6.7 -5.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00850 -6.6 -8.8 acetylglutamate kinase compare
BWI76_RS09645 -6.5 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS11850 -6.5 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04665 -6.4 -20.6 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04245 -6.4 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS26085 -6.4 -4.4 3-dehydroquinate synthase compare
BWI76_RS04675 -6.4 -8.6 3-isopropylmalate dehydrogenase compare
BWI76_RS21265 -6.3 -14.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18935 -6.3 -7.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20895 -6.3 -6.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00980 -6.3 -13.5 PLP-dependent threonine dehydratase compare
BWI76_RS05840 -6.2 -6.8 glutamate 5-kinase compare
BWI76_RS01655 -6.2 -10.4 homoserine O-succinyltransferase compare
BWI76_RS01615 -6.2 -11.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS09755 -6.2 -8.5 phosphoserine transaminase compare
BWI76_RS03010 -6.0 -7.3 ornithine carbamoyltransferase compare
BWI76_RS11860 -6.0 -7.6 anthranilate synthase component I compare
BWI76_RS25645 -5.9 -9.8 shikimate dehydrogenase compare
BWI76_RS00990 -5.9 -10.3 ketol-acid reductoisomerase compare
BWI76_RS27390 -5.8 -4.4 ribonuclease PH compare
BWI76_RS00985 -5.8 -9.6 transcriptional regulator IlvY compare
BWI76_RS07070 -5.7 -6.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS18930 -5.6 -2.4 histidinol-phosphate transaminase compare
BWI76_RS08385 -5.6 -5.4 citrate (Si)-synthase compare
BWI76_RS09910 -5.6 -16.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS18955 -5.6 -6.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS21465 -5.4 -4.5 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS13920 -5.4 -9.5 magnesium-translocating P-type ATPase compare
BWI76_RS01610 -5.4 -4.9 phosphoribosylamine--glycine ligase compare
BWI76_RS04680 -5.3 -11.4 2-isopropylmalate synthase compare
BWI76_RS22760 -5.2 -9.2 sulfite reductase subunit beta compare
BWI76_RS11855 -5.2 -7.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS07065 -5.2 -5.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00845 -5.1 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS11845 -5.1 -2.1 tryptophan synthase subunit beta compare
BWI76_RS11840 -5.0 -4.6 tryptophan synthase subunit alpha compare
BWI76_RS23365 -5.0 -8.3 LysR family transcriptional regulator compare
BWI76_RS00975 -4.9 -6.5 dihydroxy-acid dehydratase compare
BWI76_RS22755 -4.8 -6.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS23920 -4.7 -4.9 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00400 -4.7 -3.2 glutamine synthetase compare
BWI76_RS22765 -4.5 -15.2 sulfite reductase subunit alpha compare
BWI76_RS10990 -4.4 -2.2 dihydroorotase compare
BWI76_RS20965 -4.2 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS26000 -4.1 -10.8 aspartate aminotransferase family protein compare
BWI76_RS04645 -4.1 -4.0 3-dehydroquinase compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS02735 -4.0 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS20435 -3.9 -2.4 chorismate synthase compare
BWI76_RS04240 -3.9 -3.9 thr operon leader peptide compare
BWI76_RS02530 -3.6 -3.6 tRNA dimethylallyltransferase compare
BWI76_RS20650 -3.6 -2.5 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS09760 -3.6 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00965 -3.6 -2.2 acetolactate synthase 2 small subunit compare
BWI76_RS15115 -3.5 -5.8 MFS transporter compare
BWI76_RS26055 -3.3 -8.1 siroheme synthase compare
BWI76_RS22690 -3.2 -2.6 adenylyl-sulfate kinase compare
BWI76_RS01800 -3.2 -3.3 glucose-6-phosphate isomerase compare
BWI76_RS09660 -3.1 -2.1 DNA translocase FtsK compare
BWI76_RS00180 -3.0 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS26570 -3.0 -3.1 anion permease compare
BWI76_RS23230 -2.9 -2.8 exodeoxyribonuclease V subunit beta compare
BWI76_RS00960 -2.6 -4.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS04510 -2.4 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS23265 -2.4 -3.7 hypothetical protein compare
BWI76_RS13915 -2.3 -4.9 magnesium transport protein MgtC compare
BWI76_RS01350 -2.2 -1.9 NAD(P)H-flavin reductase compare
BWI76_RS25320 -2.2 -7.3 glutamate synthase compare
BWI76_RS01275 -2.2 -4.8 LysR family transcriptional regulator compare
BWI76_RS01210 -2.1 -2.7 tyrosine recombinase XerC compare
BWI76_RS22695 -2.0 -5.4 sulfate adenylyltransferase compare
BWI76_RS25315 -1.9 -12.6 glutamate synthase large subunit compare
BWI76_RS09655 -1.9 -4.0 leucine-responsive regulatory protein compare
BWI76_RS20380 -1.9 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS09730 -1.9 -2.2 pyruvate formate lyase 1-activating protein compare
BWI76_RS20640 -1.8 -5.0 cysteine synthase A compare
BWI76_RS06525 -1.8 -4.9 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS23480 -1.8 -11.6 EAL domain-containing protein compare
BWI76_RS02180 -1.8 -2.3 hypothetical protein compare
BWI76_RS12145 -1.7 -2.6 hypothetical protein compare
BWI76_RS05015 -1.7 -3.2 transcriptional regulator compare
BWI76_RS20970 -1.7 -2.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS01200 -1.7 -1.6 diaminopimelate epimerase compare
BWI76_RS27430 -1.7 -1.6 (p)ppGpp synthetase compare
BWI76_RS21370 -1.7 -2.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS06530 -1.7 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS04705 -1.7 -5.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS15225 -1.6 -1.9 DeoR family transcriptional regulator compare
BWI76_RS16075 -1.6 -1.7 oxidoreductase compare
BWI76_RS04715 -1.6 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS25280 -1.6 -2.8 RNase adaptor protein RapZ compare
BWI76_RS22700 -1.5 -5.9 sulfate adenylyltransferase subunit 2 compare
BWI76_RS19840 -1.4 -1.4 hypothetical protein compare
BWI76_RS25065 -1.4 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS09870 -1.4 -6.2 aromatic amino acid aminotransferase compare
BWI76_RS20440 -1.4 -0.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS22805 -1.3 -7.5 GTP diphosphokinase compare
BWI76_RS15110 -1.3 -6.8 putative excinuclease ABC subunit A compare
BWI76_RS13215 -1.3 -1.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS24025 -1.3 -7.2 agmatinase compare
BWI76_RS25335 -1.3 -2.3 stringent starvation protein A compare
BWI76_RS02985 -1.2 -4.8 reactive intermediate/imine deaminase compare
BWI76_RS05450 -1.2 -1.4 ribonuclease HI compare
BWI76_RS04100 -1.2 -4.2 peptide chain release factor 3 compare
BWI76_RS16315 -1.2 -1.2 SirA-like protein compare
BWI76_RS15840 -1.2 -2.1 prophage protein compare
BWI76_RS25070 -1.2 -1.8 hypothetical protein compare
BWI76_RS21140 -1.2 -1.8 molecular chaperone HscA compare
BWI76_RS09650 -1.2 -3.7 hypothetical protein compare
BWI76_RS06765 -1.2 -2.3 transcriptional regulator compare
BWI76_RS00390 -1.2 -3.0 two-component system sensor histidine kinase NtrB compare
BWI76_RS19845 -1.2 -3.9 phosphatase compare
BWI76_RS21480 -1.2 -2.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS13595 -1.2 -2.8 transcriptional regulator compare
BWI76_RS15850 -1.1 -0.7 DUF1317 domain-containing protein compare
BWI76_RS17195 -1.1 -2.3 hypothetical protein compare
BWI76_RS02410 -1.1 -1.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS06185 -1.1 -5.9 shikimate kinase II compare
BWI76_RS21450 -1.1 -1.8 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS22705 -1.1 -4.9 siroheme synthase compare
BWI76_RS26075 -1.1 -3.7 DNA adenine methylase compare
BWI76_RS17110 -1.1 -1.7 vitamin B12 ABC transporter permease BtuC compare
BWI76_RS16635 -1.1 -2.8 carbonate dehydratase compare
BWI76_RS24465 -1.1 -6.2 adenylate cyclase compare
BWI76_RS15830 -1.1 -1.8 hypothetical protein compare
BWI76_RS00355 -1.0 -1.5 DNA polymerase I compare
BWI76_RS06485 -1.0 -1.8 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS16355 -1.0 -1.1 electron transport complex subunit A compare
BWI76_RS19025 -1.0 -5.9 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS18140 -1.0 -2.3 zinc ABC transporter permease compare
BWI76_RS00600 -1.0 -5.1 LacI family transcriptional regulator compare
BWI76_RS00345 -1.0 -2.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS04530 -1.0 -1.6 peptidylprolyl isomerase SurA compare
BWI76_RS16200 -1.0 -1.9 NAD(P) transhydrogenase subunit beta compare
BWI76_RS15810 -0.9 -4.0 hypothetical protein compare
BWI76_RS16360 -0.9 -1.4 electron transport complex subunit RsxB compare
BWI76_RS05165 -0.9 -2.7 cobalamin-binding protein compare
BWI76_RS01685 -0.9 -5.7 methionine synthase compare
BWI76_RS07710 -0.9 -2.7 invasin-like protein compare
BWI76_RS17190 -0.9 -2.0 TonB system transport protein TonB compare
BWI76_RS00385 -0.9 -4.5 nitrogen assimilation regulatory protein compare
BWI76_RS23895 -0.9 -1.5 Xaa-Pro aminopeptidase compare
BWI76_RS00380 -0.9 -5.2 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS05570 -0.9 -1.2 hypothetical protein compare
BWI76_RS23885 -0.8 -1.3 2-octaprenylphenol hydroxylase compare
BWI76_RS20995 -0.8 -3.9 RNA degradosome polyphosphate kinase compare
BWI76_RS17095 -0.8 -4.6 vitamin B12 ABC transporter ATP-binding protein BtuD compare
BWI76_RS00440 -0.8 -1.4 CopG family transcriptional regulator compare
BWI76_RS05465 -0.8 -1.2 amidohydrolase compare
BWI76_RS16150 -0.8 -1.3 IclR family transcriptional regulator compare
BWI76_RS16485 -0.8 -1.1 ribonuclease T compare
BWI76_RS12040 -0.8 -1.2 hypothetical protein compare
BWI76_RS21340 -0.8 -1.1 SoxR reducing system protein RseC compare
BWI76_RS00755 -0.8 -3.1 ATP-dependent protease subunit HslV compare
BWI76_RS20155 -0.8 -0.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS20430 -0.8 -2.2 penicillin-insensitive murein endopeptidase compare
BWI76_RS24075 -0.8 -2.4 glutathione synthase compare
BWI76_RS17050 -0.8 -4.4 FAD-binding oxidoreductase compare
BWI76_RS22640 -0.8 -2.0 hypothetical protein compare
BWI76_RS06295 -0.8 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS12195 -0.8 -2.4 hypothetical protein compare
BWI76_RS21000 -0.8 -3.5 exopolyphosphatase compare
BWI76_RS06240 -0.8 -2.0 branched-chain amino acid transport system 2 carrier protein BrnQ compare
BWI76_RS15835 -0.8 -0.8 hypothetical protein compare
BWI76_RS23055 -0.8 -2.6 cobalamin biosynthesis protein CbiG compare
BWI76_RS27440 -0.8 -2.3 DNA helicase RecG compare
BWI76_RS25505 -0.8 -3.8 RNase E specificity factor CsrD compare
BWI76_RS14980 -0.8 -1.3 hypothetical protein compare
BWI76_RS14680 -0.8 -2.6 SefF compare
BWI76_RS26175 -0.8 -2.5 DeoR/GlpR family transcriptional regulator compare
BWI76_RS08525 -0.8 -1.2 colicin transporter compare
BWI76_RS06770 -0.7 -4.3 Hha toxicity attenuator compare
BWI76_RS00970 -0.7 -1.2 branched chain amino acid aminotransferase compare
BWI76_RS23485 -0.7 -4.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms