Experiment set8IT087 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS25960 -7.0 -4.8 NUDIX hydrolase compare
BWI76_RS09645 -6.9 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS05015 -6.8 -4.7 transcriptional regulator compare
BWI76_RS01210 -6.6 -4.5 tyrosine recombinase XerC compare
BWI76_RS04510 -5.8 -3.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS00965 -5.3 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS23360 -4.9 -5.5 diaminopimelate decarboxylase compare
BWI76_RS18950 -4.5 -5.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26085 -4.4 -3.4 3-dehydroquinate synthase compare
BWI76_RS18940 -4.3 -6.1 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20435 -4.2 -2.3 chorismate synthase compare
BWI76_RS00180 -4.1 -2.3 F0F1 ATP synthase subunit epsilon compare
BWI76_RS08385 -4.0 -5.0 citrate (Si)-synthase compare
BWI76_RS15115 -3.7 -7.0 MFS transporter compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS05840 -3.4 -4.7 glutamate 5-kinase compare
BWI76_RS27820 -3.4 -1.9 ilvB operon leader peptide IvbL compare
BWI76_RS01655 -3.4 -8.8 homoserine O-succinyltransferase compare
BWI76_RS02815 -3.3 -3.3 fructose-bisphosphatase class I compare
BWI76_RS18920 -3.3 -4.2 ATP phosphoribosyltransferase compare
BWI76_RS01615 -3.3 -7.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS20895 -3.2 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18930 -3.2 -8.1 histidinol-phosphate transaminase compare
BWI76_RS18935 -3.1 -7.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00980 -3.1 -10.2 PLP-dependent threonine dehydratase compare
BWI76_RS26075 -3.1 -5.4 DNA adenine methylase compare
BWI76_RS00855 -3.0 -7.8 argininosuccinate lyase compare
BWI76_RS20350 -3.0 -6.7 amidophosphoribosyltransferase compare
BWI76_RS04665 -3.0 -17.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01185 -2.9 -3.5 adenylate cyclase compare
BWI76_RS21475 -2.9 -5.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04255 -2.9 -8.5 threonine synthase compare
BWI76_RS04675 -2.9 -6.7 3-isopropylmalate dehydrogenase compare
BWI76_RS03010 -2.9 -8.1 ornithine carbamoyltransferase compare
BWI76_RS13920 -2.9 -7.4 magnesium-translocating P-type ATPase compare
BWI76_RS04465 -2.9 -7.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS09760 -2.9 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS23365 -2.8 -5.5 LysR family transcriptional regulator compare
BWI76_RS00785 -2.8 -6.7 cystathionine gamma-synthase compare
BWI76_RS04670 -2.8 -8.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS07070 -2.8 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04160 -2.7 -5.4 phosphoserine phosphatase compare
BWI76_RS05835 -2.7 -2.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS04250 -2.7 -5.9 homoserine kinase compare
BWI76_RS04705 -2.7 -6.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS04470 -2.7 -7.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS02410 -2.7 -3.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS09755 -2.7 -7.6 phosphoserine transaminase compare
BWI76_RS23920 -2.7 -5.5 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20150 -2.7 -2.3 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS00400 -2.7 -2.0 glutamine synthetase compare
BWI76_RS19375 -2.6 -2.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS23220 -2.6 -7.5 amino-acid N-acetyltransferase compare
BWI76_RS04685 -2.6 -9.3 putative leucine operon leader peptide compare
BWI76_RS01660 -2.6 -5.8 malate synthase A compare
BWI76_RS24285 -2.6 -7.8 cystathionine beta-lyase compare
BWI76_RS00975 -2.5 -8.7 dihydroxy-acid dehydratase compare
BWI76_RS19605 -2.5 -5.6 CidB/LrgB family autolysis modulator compare
BWI76_RS19600 -2.5 -8.9 hypothetical protein compare
BWI76_RS21265 -2.5 -8.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS20965 -2.5 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00850 -2.5 -8.4 acetylglutamate kinase compare
BWI76_RS00805 -2.4 -7.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00845 -2.4 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00990 -2.4 -9.3 ketol-acid reductoisomerase compare
BWI76_RS04680 -2.4 -13.9 2-isopropylmalate synthase compare
BWI76_RS02995 -2.4 -8.0 aspartate carbamoyltransferase compare
BWI76_RS01670 -2.3 -7.4 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
BWI76_RS11840 -2.3 -3.4 tryptophan synthase subunit alpha compare
BWI76_RS13800 -2.3 -5.8 zinc-dependent alcohol dehydrogenase compare
BWI76_RS23230 -2.3 -3.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS11845 -2.2 -3.9 tryptophan synthase subunit beta compare
BWI76_RS01665 -2.2 -5.0 Isocitrate lyase (EC 4.1.3.1) (from data) compare
BWI76_RS21990 -2.2 -9.5 ATPase AAA compare
BWI76_RS01610 -2.2 -7.1 phosphoribosylamine--glycine ligase compare
BWI76_RS11850 -2.2 -8.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS15225 -2.2 -4.5 DeoR family transcriptional regulator compare
BWI76_RS02095 -2.2 -12.5 acetyl-coenzyme A synthetase compare
BWI76_RS20355 -2.2 -3.9 colicin V production protein compare
BWI76_RS24075 -2.2 -3.8 glutathione synthase compare
BWI76_RS09910 -2.2 -12.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS25115 -2.2 -7.0 argininosuccinate synthase compare
BWI76_RS16235 -2.1 -5.9 membrane protein compare
BWI76_RS11860 -2.1 -5.2 anthranilate synthase component I compare
BWI76_RS21465 -2.1 -3.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS26095 -2.0 -2.1 shikimate kinase compare
BWI76_RS20650 -2.0 -2.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS07065 -2.0 -7.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS17975 -2.0 -4.0 tail-specific protease compare
BWI76_RS07675 -2.0 -3.8 DeoR family transcriptional regulator compare
BWI76_RS04240 -1.9 -3.5 thr operon leader peptide compare
BWI76_RS20170 -1.9 -5.5 NADH-quinone oxidoreductase subunit F compare
BWI76_RS27385 -1.9 -5.3 orotate phosphoribosyltransferase compare
BWI76_RS22755 -1.9 -5.4 phosphoadenosine phosphosulfate reductase compare
BWI76_RS11855 -1.9 -4.5 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04245 -1.9 -8.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00380 -1.9 -8.5 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS21985 -1.8 -9.1 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
BWI76_RS04645 -1.8 -4.0 3-dehydroquinase compare
BWI76_RS08395 -1.8 -2.7 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS11965 -1.8 -4.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS25420 -1.8 -6.6 malate dehydrogenase compare
BWI76_RS08405 -1.8 -3.7 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS18925 -1.8 -5.2 histidinol dehydrogenase compare
BWI76_RS27815 -1.7 -11.4 acetolactate synthase catalytic subunit compare
BWI76_RS26190 -1.7 -4.2 glycerol-3-phosphate dehydrogenase compare
BWI76_RS19330 -1.7 -1.5 HAD family hydrolase compare
BWI76_RS22760 -1.7 -7.4 sulfite reductase subunit beta compare
BWI76_RS13915 -1.6 -5.1 magnesium transport protein MgtC compare
BWI76_RS22690 -1.6 -3.8 adenylyl-sulfate kinase compare
BWI76_RS18955 -1.5 -4.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS12145 -1.5 -2.8 hypothetical protein compare
BWI76_RS20190 -1.5 -4.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS10990 -1.5 -2.7 dihydroorotase compare
BWI76_RS20160 -1.5 -2.6 NADH-quinone oxidoreductase subunit H compare
BWI76_RS23240 -1.5 -2.6 exonuclease V subunit gamma compare
BWI76_RS18110 -1.5 -5.0 transcriptional regulator HexR compare
BWI76_RS27395 -1.4 -4.2 hypothetical protein compare
BWI76_RS06185 -1.4 -6.5 shikimate kinase II compare
BWI76_RS20140 -1.4 -4.4 NADH-quinone oxidoreductase subunit L compare
BWI76_RS20135 -1.4 -4.4 NADH-quinone oxidoreductase subunit M compare
BWI76_RS06540 -1.4 -3.1 DNA-binding protein HU-beta compare
BWI76_RS26065 -1.4 -3.6 phosphoglycolate phosphatase compare
BWI76_RS05200 -1.4 -1.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS03415 -1.3 -4.7 LacI family transcriptional regulator compare
BWI76_RS15825 -1.3 -1.8 hypothetical protein compare
BWI76_RS00985 -1.3 -2.3 transcriptional regulator IlvY compare
BWI76_RS05680 -1.3 -2.9 LacI family transcriptional regulator compare
BWI76_RS21375 -1.3 -1.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS20830 -1.3 -5.7 bifunctional malic enzyme oxidoreductase/phosphotransacetylase compare
BWI76_RS15840 -1.2 -1.8 prophage protein compare
BWI76_RS20165 -1.2 -3.4 NADH-quinone oxidoreductase subunit G compare
BWI76_RS13595 -1.2 -4.2 transcriptional regulator compare
BWI76_RS06495 -1.2 -4.6 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS20180 -1.2 -4.3 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS25160 -1.2 -2.0 transcription elongation factor GreA compare
BWI76_RS27390 -1.2 -3.5 ribonuclease PH compare
BWI76_RS03880 -1.2 -2.7 homoprotocatechuate degradation operon regulator, HpaR compare
BWI76_RS15760 -1.2 -1.7 hypothetical protein compare
BWI76_RS03080 -1.2 -2.8 (Fe-S)-cluster assembly protein compare
BWI76_RS17980 -1.1 -2.3 RNA chaperone ProQ compare
BWI76_RS07120 -1.1 -5.6 LacI family transcriptional regulator compare
BWI76_RS24740 -1.1 -2.3 GntR family transcriptional regulator compare
BWI76_RS01550 -1.1 -2.9 thiamine phosphate synthase compare
BWI76_RS19845 -1.1 -2.7 phosphatase compare
BWI76_RS22765 -1.1 -5.1 sulfite reductase subunit alpha compare
BWI76_RS01535 -1.1 -4.8 thiazole synthase compare
BWI76_RS09255 -1.1 -2.3 hypothetical protein compare
BWI76_RS18165 -1.1 -1.6 NUDIX pyrophosphatase compare
BWI76_RS24925 -1.1 -1.4 DnaA initiator-associating protein DiaA compare
BWI76_RS06490 -1.1 -3.1 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS20145 -1.0 -1.5 NADH-quinone oxidoreductase subunit K compare
BWI76_RS02735 -1.0 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS17675 -1.0 -1.7 hypothetical protein compare
BWI76_RS17720 -1.0 -0.9 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS15850 -1.0 -0.6 DUF1317 domain-containing protein compare
BWI76_RS20130 -1.0 -3.4 NADH-quinone oxidoreductase subunit N compare
BWI76_RS20155 -1.0 -1.5 NADH-quinone oxidoreductase subunit I compare
BWI76_RS25600 -1.0 -0.9 tRNA-Thr compare
BWI76_RS20995 -1.0 -3.6 RNA degradosome polyphosphate kinase compare
BWI76_RS02255 -1.0 -2.7 chaperone-modulator protein CbpM compare
BWI76_RS09650 -1.0 -5.1 hypothetical protein compare
BWI76_RS26405 -1.0 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS03660 -0.9 -2.1 hypothetical protein compare
BWI76_RS16965 -0.9 -2.6 murein lipoprotein compare
BWI76_RS27075 -0.9 -4.0 IclR family transcriptional regulator compare
BWI76_RS22655 -0.9 -4.0 protein-L-isoaspartate O-methyltransferase compare
BWI76_RS19730 -0.9 -2.5 1-phosphofructokinase compare
BWI76_RS06730 -0.9 -1.3 lac repressor compare
BWI76_RS05005 -0.9 -2.1 polynucleotide adenylyltransferase compare
BWI76_RS15830 -0.9 -1.6 hypothetical protein compare
BWI76_RS25335 -0.9 -2.1 stringent starvation protein A compare
BWI76_RS01070 -0.9 -3.5 thiol reductase thioredoxin compare
BWI76_RS27430 -0.9 -0.8 (p)ppGpp synthetase compare
BWI76_RS15110 -0.9 -5.5 putative excinuclease ABC subunit A compare
BWI76_RS25480 -0.9 -2.7 ribonuclease E/G compare
BWI76_RS01330 -0.9 -1.9 twin-arginine translocase subunit TatC compare
BWI76_RS01795 -0.9 -2.4 hypothetical protein compare
BWI76_RS06395 -0.9 -2.5 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS12985 -0.9 -1.6 transcriptional regulator compare
BWI76_RS08310 -0.9 -2.1 potassium-transporting ATPase subunit C compare
BWI76_RS19040 -0.9 -4.7 hypothetical protein compare
BWI76_RS16355 -0.9 -1.4 electron transport complex subunit A compare
BWI76_RS03835 -0.9 -1.5 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS14005 -0.9 -1.7 TetR family transcriptional regulator compare
BWI76_RS04515 -0.8 -1.2 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS01555 -0.8 -3.7 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS06475 -0.8 -1.2 protoheme IX farnesyltransferase compare
BWI76_RS05470 -0.8 -7.1 acyl-CoA dehydrogenase compare
BWI76_RS01350 -0.8 -0.9 NAD(P)H-flavin reductase compare
BWI76_RS27455 -0.8 -1.9 DUF805 domain-containing protein compare
BWI76_RS05570 -0.8 -1.1 hypothetical protein compare
BWI76_RS12680 -0.8 -2.6 oxidoreductase compare
BWI76_RS16955 -0.8 -1.1 hypothetical protein compare
BWI76_RS16015 -0.8 -2.2 pheromone autoinducer 2 transporter compare
BWI76_RS00600 -0.8 -1.9 LacI family transcriptional regulator compare
BWI76_RS27810 -0.8 -5.0 acetolactate synthase isozyme 1 small subunit compare
BWI76_RS20360 -0.8 -1.0 cell division protein DedD compare
BWI76_RS16290 -0.8 -3.1 Mal regulon transcriptional regulator MalI compare
BWI76_RS00865 -0.8 -3.3 DNA-binding transcriptional regulator OxyR compare


Specific Phenotypes

For 19 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms