Experiment set8IT087 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS10020 +1.9 15.9 ABC transporter compare
BWI76_RS25905 +1.9 9.4 hypothetical protein compare
BWI76_RS10010 +1.9 16.0 hypothetical protein compare
BWI76_RS10015 +1.9 12.9 putative outer membrane efflux protein compare
BWI76_RS10025 +1.8 15.9 secretion protein HlyD compare
BWI76_RS01800 +1.8 4.5 glucose-6-phosphate isomerase compare
BWI76_RS10030 +1.7 12.9 glycosyl transferase compare
BWI76_RS16895 +1.4 3.2 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS09150 +1.4 7.5 DNA-binding transcriptional repressor DeoR compare
BWI76_RS13280 +1.4 9.9 LysR family transcriptional regulator compare
BWI76_RS01080 +1.2 8.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS04130 +1.2 6.0 2-deoxyribose-5-phosphate aldolase compare
BWI76_RS21165 +1.2 3.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS21100 +1.1 3.8 nucleoside-diphosphate kinase compare
BWI76_RS18580 +1.1 3.8 hypothetical protein compare
BWI76_RS01110 +1.1 3.8 TDP-fucosamine acetyltransferase compare
BWI76_RS10575 +1.1 1.3 polar amino acid ABC transporter permease compare
BWI76_RS01135 +1.0 4.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS05075 +1.0 1.6 type II secretion system protein GspG compare
BWI76_RS06885 +1.0 1.3 TonB family protein compare
BWI76_RS14075 +0.9 3.1 TetR family transcriptional regulator compare
BWI76_RS25870 +0.9 2.5 elongation factor Tu compare
BWI76_RS09730 +0.9 2.6 pyruvate formate lyase 1-activating protein compare
BWI76_RS11770 +0.9 3.3 hypothetical protein compare
BWI76_RS01125 +0.9 3.4 4-alpha-L-fucosyltransferase compare
BWI76_RS23025 +0.9 1.1 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS04530 +0.9 1.6 peptidylprolyl isomerase SurA compare
BWI76_RS11040 +0.9 1.8 ribonuclease E compare
BWI76_RS01095 +0.9 2.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01090 +0.9 3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS21370 +0.8 3.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS10745 +0.8 1.6 hypothetical protein compare
BWI76_RS20200 +0.8 5.5 transcriptional regulator LrhA compare
BWI76_RS06735 +0.8 2.3 50S ribosomal protein L31 compare
BWI76_RS07985 +0.8 1.4 fluoride ion transporter CrcB compare
BWI76_RS02725 +0.8 1.4 HxlR family transcriptional regulator compare
BWI76_RS03850 +0.8 2.6 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BWI76_RS15015 +0.8 2.1 DUF2132 domain-containing protein compare
BWI76_RS21450 +0.8 3.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS17770 +0.8 1.2 isomerase/hydrolase compare
BWI76_RS15435 +0.7 1.8 hypothetical protein compare
BWI76_RS15920 +0.7 2.0 hypothetical protein compare
BWI76_RS01675 +0.7 2.7 putative cytoplasmic protein compare
BWI76_RS11810 +0.7 2.0 outer membrane protein OmpW compare
BWI76_RS24080 +0.7 1.4 DUF179 domain-containing protein compare
BWI76_RS12545 +0.7 1.8 hypothetical protein compare
BWI76_RS11635 +0.7 2.0 ABC transporter compare
BWI76_RS08980 +0.7 1.3 DNA starvation/stationary phase protection protein compare
BWI76_RS12570 +0.7 1.8 DUF1365 domain-containing protein compare
BWI76_RS20940 +0.7 1.1 uracil/xanthine transporter compare
BWI76_RS18870 +0.7 1.4 protein NifZ compare
BWI76_RS08525 +0.7 1.6 colicin transporter compare
BWI76_RS07305 +0.7 4.7 sucrose operon repressor compare
BWI76_RS06805 +0.7 2.3 primosomal replication protein N'' compare
BWI76_RS23490 +0.7 4.8 fimbrial protein compare
BWI76_RS15045 +0.6 3.1 LysR family transcriptional regulator compare
BWI76_RS00295 +0.6 3.8 transcriptional regulator RbsR compare
BWI76_RS21070 +0.6 1.3 outer membrane protein assembly factor BamB compare
BWI76_RS20230 +0.6 1.6 hypothetical protein compare
BWI76_RS18575 +0.6 2.4 transcriptional regulator compare
BWI76_RS19770 +0.6 1.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS16805 +0.6 1.8 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS15975 +0.6 1.1 hypothetical protein compare
BWI76_RS14575 +0.6 2.6 TENA/THI-4 family protein compare
BWI76_RS01115 +0.6 2.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS23065 +0.6 1.6 cobalt-precorrin-6Y C(15)-methyltransferase compare
BWI76_RS01000 +0.6 1.8 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS19785 +0.6 2.8 microcin C ABC transporter permease YejB compare
BWI76_RS25485 +0.6 1.3 septum formation protein Maf compare
BWI76_RS05050 +0.6 2.7 general secretion pathway protein GspL compare
BWI76_RS03015 +0.6 2.7 RNase E inhibitor protein compare
BWI76_RS16515 +0.6 1.7 LysR family transcriptional regulator compare
BWI76_RS11360 +0.6 2.7 L-asparaginase compare
BWI76_RS02745 +0.6 1.1 hypothetical protein compare
BWI76_RS11285 +0.6 1.3 transcriptional regulator compare
BWI76_RS01040 +0.6 4.4 transcriptional regulator compare
BWI76_RS22185 +0.6 2.6 hypothetical protein compare
BWI76_RS19460 +0.6 1.2 lipoprotein compare
BWI76_RS15360 +0.6 1.6 hypothetical protein compare
BWI76_RS24270 +0.6 1.5 membrane protein compare
BWI76_RS11235 +0.6 1.2 hypothetical protein compare
BWI76_RS00370 +0.6 1.2 GTPase-activating protein compare
BWI76_RS02680 +0.6 1.4 EamA family transporter compare
BWI76_RS10330 +0.6 1.3 TetR family transcriptional regulator compare
BWI76_RS24575 +0.6 1.3 hypothetical protein compare
BWI76_RS14940 +0.6 2.0 hypothetical protein compare
BWI76_RS07820 +0.6 1.8 S-methyl-5-thioribose kinase compare
BWI76_RS27560 +0.6 2.3 hypothetical protein compare
BWI76_RS00940 +0.5 4.2 transcriptional regulator HdfR compare
BWI76_RS01085 +0.5 2.6 polysaccharide chain length modulation protein compare
BWI76_RS26875 +0.5 1.2 dipeptide ABC transporter permease DppC compare
BWI76_RS23495 +0.5 3.7 hypothetical protein compare
BWI76_RS14435 +0.5 1.4 glutamine ABC transporter ATP-binding protein compare
BWI76_RS18695 +0.5 2.1 GntR family transcriptional regulator compare
BWI76_RS26010 +0.5 2.5 cell filamentation protein Fic compare
BWI76_RS01775 +0.5 0.9 hypothetical protein compare
BWI76_RS14020 +0.5 2.5 aspartate aminotransferase family protein compare
BWI76_RS09860 +0.5 2.7 hypothetical protein compare
BWI76_RS09110 +0.5 1.7 glutathione ABC transporter permease GsiD compare
BWI76_RS18605 +0.5 1.4 oxidoreductase molybdopterin-binding protein compare
BWI76_RS05260 +0.5 1.2 chaperone compare
BWI76_RS01105 +0.5 2.3 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS08985 +0.5 2.9 threonine/homoserine exporter RhtA compare
BWI76_RS17530 +0.5 1.6 hypothetical protein compare
BWI76_RS16275 +0.5 1.4 fumarate hydratase FumA compare
BWI76_RS18770 +0.5 0.9 DNA gyrase inhibitor compare
BWI76_RS17570 +0.5 1.2 iron-sulfur-binding protein compare
BWI76_RS07470 +0.5 1.3 MBL fold metallo-hydrolase compare
BWI76_RS20635 +0.5 2.1 sulfate transporter CysZ compare
BWI76_RS08230 +0.5 1.4 hypothetical protein compare
BWI76_RS15965 +0.5 1.6 MFS transporter compare
BWI76_RS21675 +0.5 1.3 hypothetical protein compare
BWI76_RS23255 +0.5 1.5 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS25505 +0.5 3.1 RNase E specificity factor CsrD compare
BWI76_RS13630 +0.5 2.4 ABC transporter compare
BWI76_RS26470 +0.5 2.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS24945 +0.5 0.8 glutamine amidotransferase compare
BWI76_RS00290 +0.5 2.6 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS21075 +0.5 1.4 membrane protein compare
BWI76_RS06810 +0.5 2.0 hypothetical protein compare
BWI76_RS18125 +0.5 2.7 murein DD-endopeptidase MepM compare
BWI76_RS06630 +0.5 2.2 hypothetical protein compare
BWI76_RS05790 +0.5 1.1 phage DNA-binding protein compare
BWI76_RS23505 +0.5 4.0 ferrous iron transporter B compare
BWI76_RS15530 +0.5 1.2 hypothetical protein compare
BWI76_RS11585 +0.5 2.1 signal peptide peptidase A compare
BWI76_RS02545 +0.5 3.1 protease modulator HflK compare
BWI76_RS07735 +0.5 2.6 MFS transporter compare
BWI76_RS15915 +0.5 3.0 YnfC family lipoprotein compare
BWI76_RS17970 +0.5 1.6 zinc metalloprotease HtpX compare
BWI76_RS16455 +0.5 1.4 superoxide dismutase compare
BWI76_RS01805 +0.5 2.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
BWI76_RS15845 +0.5 0.8 hypothetical protein compare
BWI76_RS10730 +0.5 1.8 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS18815 +0.5 1.4 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS11490 +0.5 1.9 MltA-interacting protein MipA compare
BWI76_RS23735 +0.5 2.1 sugar diacid utilization regulator compare
BWI76_RS03825 +0.5 1.4 4-hydroxyphenylacetate 3-monooxygenase compare
BWI76_RS19900 +0.4 1.2 FAD:protein FMN transferase compare
BWI76_RS20565 +0.4 1.1 hypothetical protein compare
BWI76_RS12465 +0.4 0.8 phage shock protein D compare
BWI76_RS22215 +0.4 1.6 PTS sorbitol transporter subunit IIC compare
BWI76_RS14415 +0.4 1.0 transcriptional regulator, TetR family protein compare
BWI76_RS21980 +0.4 1.3 hypothetical protein compare
BWI76_RS06850 +0.4 2.1 inosine/guanosine kinase compare
BWI76_RS00715 +0.4 1.3 two-component sensor histidine kinase compare
BWI76_RS01190 +0.4 1.5 iron donor protein CyaY compare
BWI76_RS11580 +0.4 1.1 L-asparaginase 1 compare
BWI76_RS11890 +0.4 2.1 glycosyl hydrolase compare
BWI76_RS25850 +0.4 1.7 prepilin peptidase compare
BWI76_RS06290 +0.4 1.3 ACP phosphodiesterase compare
BWI76_RS02850 +0.4 2.1 metalloprotease PmbA compare
BWI76_RS23050 +0.4 1.2 cobalt-precorrin-3B C(17)-methyltransferase compare
BWI76_RS05045 +0.4 0.7 general secretion pathway protein GspM compare
BWI76_RS14505 +0.4 1.6 salicylate synthase Irp9 compare
BWI76_RS07785 +0.4 1.0 transcriptional regulator compare
BWI76_RS07865 +0.4 0.9 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS06800 +0.4 0.8 DUF2496 domain-containing protein compare
BWI76_RS18200 +0.4 2.2 copper homeostasis protein CutC compare
BWI76_RS00740 +0.4 1.8 ribonuclease E activity regulator RraA compare
BWI76_RS12405 +0.4 2.0 diguanylate phosphodiesterase compare
BWI76_RS22335 +0.4 1.2 4Fe-4S ferredoxin compare
BWI76_RS02225 +0.4 1.4 phosphonate C-P lyase system protein PhnG compare
BWI76_RS23125 +0.4 1.0 propanediol dehydratase small subunit compare
BWI76_RS16030 +0.4 1.6 malonate decarboxylase acyl carrier protein compare
BWI76_RS09455 +0.4 1.4 YbjN domain-containing protein compare
BWI76_RS00505 +0.4 2.0 PTS system, sorbose-specific IIB component compare
BWI76_RS07795 +0.4 2.2 oxidoreductase compare
BWI76_RS00075 +0.4 1.3 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS04975 +0.4 1.7 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS21310 +0.4 0.6 DNA repair protein RecO compare
BWI76_RS22375 +0.4 1.3 pectin acetylesterase compare
BWI76_RS00795 +0.4 0.9 carboxymuconolactone decarboxylase compare
BWI76_RS10045 +0.4 1.9 23S rRNA (cytosine(1962)-C(5))-methyltransferase compare
BWI76_RS06880 +0.4 2.0 biopolymer transport protein ExbD/TolR compare
BWI76_RS18375 +0.4 1.6 hypothetical protein compare
BWI76_RS20475 +0.4 1.3 phospholipid-binding lipoprotein MlaA compare
BWI76_RS20800 +0.4 2.0 carboxysome shell protein compare
BWI76_RS02150 +0.4 2.1 allulose-6-phosphate 3-epimerase compare
BWI76_RS21505 +0.4 0.7 hypothetical protein compare
BWI76_RS26830 +0.4 2.0 endoglucanase compare
BWI76_RS22115 +0.4 2.6 S-ribosylhomocysteine lyase compare
BWI76_RS05810 +0.4 0.8 hypothetical protein compare
BWI76_RS15300 +0.4 1.6 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS23320 +0.4 0.9 hypothetical protein compare
BWI76_RS21285 +0.4 1.0 HAD family hydrolase compare
BWI76_RS07310 +0.4 1.6 sucrose-6-phosphate hydrolase compare
BWI76_RS18455 +0.4 0.9 tRNA-Ser compare
BWI76_RS26755 +0.4 2.9 peptidase M16 compare
BWI76_RS22505 +0.4 2.1 3-oxoacyl-ACP reductase compare
BWI76_RS23760 +0.4 1.0 tRNA-Gly compare
BWI76_RS23695 +0.4 1.6 deoxyribonyl-CoA synthetase (from data) compare
BWI76_RS17880 +0.4 2.9 c-di-GMP phosphodiesterase compare
BWI76_RS06335 +0.4 1.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS23860 +0.4 1.2 protein disulfide oxidoreductase compare
BWI76_RS03175 +0.4 2.3 hypothetical protein compare
BWI76_RS01725 +0.4 1.9 PTS mannose/fructose/sorbose family transporter subunit IID compare
BWI76_RS09105 +0.4 1.4 glutathione ABC transporter permease GsiC compare
BWI76_RS15210 +0.4 1.8 LysR family transcriptional regulator compare
BWI76_RS07635 +0.4 1.5 Hok/gef cell toxic protein compare


Specific Phenotypes

For 19 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms