Experiment set8IT086 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS05910 -5.5 -3.4 response regulator transcription factor compare
PFLU_RS21935 -4.8 -22.1 sensor histidine kinase compare
PFLU_RS00415 -4.6 -3.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25640 -4.3 -18.1 ketol-acid reductoisomerase compare
PFLU_RS01620 -4.2 -13.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27365 -4.1 -11.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS07725 -4.1 -8.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS00180 -4.1 -10.9 tryptophan synthase subunit beta compare
PFLU_RS18610 -4.0 -17.5 isocitrate lyase compare
PFLU_RS20515 -4.0 -9.2 amidophosphoribosyltransferase compare
PFLU_RS04470 -3.9 -16.6 histidinol dehydrogenase compare
PFLU_RS01605 -3.9 -11.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27685 -3.8 -16.5 malate synthase G compare
PFLU_RS20565 -3.7 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS20580 -3.7 -14.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01625 -3.7 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28535 -3.6 -15.1 dihydroxy-acid dehydratase compare
PFLU_RS20575 -3.6 -5.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02490 -3.5 -13.1 phosphoserine phosphatase SerB compare
PFLU_RS05750 -3.5 -2.6 methionine--tRNA ligase compare
PFLU_RS04465 -3.5 -9.0 ATP phosphoribosyltransferase compare
PFLU_RS01320 -3.5 -13.2 phosphoenolpyruvate carboxykinase compare
PFLU_RS25645 -3.5 -4.6 acetolactate synthase small subunit compare
PFLU_RS01900 -3.4 -8.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04565 -3.4 -1.5 TMEM165/GDT1 family protein compare
PFLU_RS20540 -3.3 -11.9 phosphoribosylanthranilate isomerase compare
PFLU_RS07275 -3.3 -5.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04165 -3.3 -10.8 cell division protein ZapE compare
PFLU_RS24765 -3.3 -19.5 2-isopropylmalate synthase compare
PFLU_RS01610 -3.2 -12.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28695 -3.2 -6.6 phosphoglycerate dehydrogenase compare
PFLU_RS01895 -3.2 -5.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS18505 -3.1 -13.3 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23355 -3.1 -23.4 acetate--CoA ligase compare
PFLU_RS13540 -3.1 -7.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28385 -3.0 -11.5 homoserine O-acetyltransferase compare
PFLU_RS25735 -3.0 -10.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS03555 -3.0 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS02565 -2.9 -9.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS02590 -2.9 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28390 -2.9 -9.4 methionine biosynthesis protein MetW compare
PFLU_RS20510 -2.9 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25360 -2.8 -5.9 glutamate 5-kinase compare
PFLU_RS27370 -2.8 -11.0 anthranilate phosphoribosyltransferase compare
PFLU_RS05890 -2.8 -1.6 recombination regulator RecX compare
PFLU_RS27465 -2.8 -7.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS25715 -2.8 -11.7 RNA polymerase-binding protein DksA compare
PFLU_RS12975 -2.8 -4.8 DUF934 domain-containing protein compare
PFLU_RS00175 -2.8 -10.2 tryptophan synthase subunit alpha compare
PFLU_RS06055 -2.8 -2.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25740 -2.7 -8.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS25800 -2.7 -9.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28655 -2.7 -12.7 HAD family hydrolase compare
PFLU_RS04075 -2.6 -2.0 hypothetical protein compare
PFLU_RS02050 -2.6 -13.3 NAD(P)-binding protein compare
PFLU_RS09055 -2.6 -6.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS09500 -2.6 -1.8 hypothetical protein compare
PFLU_RS05020 -2.5 -1.9 DUF1120 domain-containing protein compare
PFLU_RS01965 -2.5 -3.5 ATP-dependent protease subunit HslV compare
PFLU_RS28165 -2.5 -10.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS23310 -2.4 -10.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS07665 -2.3 -4.0 type I DNA topoisomerase compare
PFLU_RS10595 -2.3 -4.9 hypothetical protein compare
PFLU_RS22095 -2.3 -13.5 GTP diphosphokinase compare
PFLU_RS12980 -2.3 -7.7 nitrite/sulfite reductase compare
PFLU_RS02045 -2.2 -15.0 glutamate synthase large subunit compare
PFLU_RS05235 -2.2 -7.3 leucyl aminopeptidase compare
PFLU_RS22740 -2.2 -6.0 phosphoadenylyl-sulfate reductase compare
PFLU_RS14430 -2.1 -2.2 arsenate reductase ArsC compare
PFLU_RS05665 -2.1 -9.5 aquaporin compare
PFLU_RS08505 -2.1 -5.9 protease HtpX compare
PFLU_RS25595 -2.1 -2.8 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08105 -2.0 -8.3 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS30555 -2.0 -2.1 hypothetical protein compare
PFLU_RS05660 -2.0 -10.8 glycerol kinase GlpK compare
PFLU_RS25585 -1.9 -2.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS23305 -1.9 -8.0 arginine N-succinyltransferase compare
PFLU_RS22070 -1.9 -3.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS06320 -1.8 -2.0 OmpH family outer membrane protein compare
PFLU_RS16785 -1.8 -1.4 GAF domain-containing protein compare
PFLU_RS22620 -1.8 -6.6 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase conserved
PFLU_RS14545 -1.8 -2.1 hypothetical protein compare
PFLU_RS08490 -1.8 -1.8 DEAD/DEAH box helicase compare
PFLU_RS23380 -1.8 -2.1 HAD-IB family hydrolase compare
PFLU_RS24205 -1.8 -2.7 DNA binding protein compare
PFLU_RS02280 -1.8 -9.5 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS31690 -1.8 -2.2 hypothetical protein compare
PFLU_RS13085 -1.8 -3.5 DUF1315 family protein compare
PFLU_RS02760 -1.7 -6.0 N-acylglucosamine 2-epimerase compare
PFLU_RS22630 -1.7 -10.5 phosphoenolpyruvate synthase compare
PFLU_RS21495 -1.7 -3.1 TlpA family protein disulfide reductase compare
PFLU_RS29560 -1.7 -1.3 hypothetical protein compare
PFLU_RS25875 -1.7 -3.0 transcription elongation factor GreA compare
PFLU_RS00540 -1.6 -11.0 acetyl-CoA hydrolase/transferase family protein conserved
PFLU_RS00275 -1.6 -5.8 carbonic anhydrase compare
PFLU_RS29885 -1.6 -5.5 LysR family transcriptional regulator compare
PFLU_RS22595 -1.6 -2.9 OmpA family protein compare
PFLU_RS25210 -1.6 -5.1 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS28315 -1.5 -1.1 response regulator compare
PFLU_RS01390 -1.5 -6.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS29480 -1.5 -6.3 exodeoxyribonuclease III compare
PFLU_RS25200 -1.5 -6.1 protoheme IX farnesyltransferase compare
PFLU_RS31805 -1.5 -1.7 hypothetical protein compare
PFLU_RS25215 -1.5 -7.7 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS04220 -1.5 -5.4 FadR family transcriptional regulator compare
PFLU_RS25220 -1.5 -5.5 ubiquinol oxidase subunit II compare
PFLU_RS27380 -1.5 -7.7 anthranilate synthase component I compare
PFLU_RS00190 -1.5 -1.0 DUF883 domain-containing protein compare
PFLU_RS25755 -1.4 -3.3 pantoate--beta-alanine ligase compare
PFLU_RS29880 -1.4 -7.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS27640 -1.4 -1.8 alpha/beta fold hydrolase compare
PFLU_RS25790 -1.4 -4.5 polyribonucleotide nucleotidyltransferase compare
PFLU_RS14235 -1.4 -2.7 iron transporter compare
PFLU_RS24125 -1.3 -4.7 cold-shock protein compare
PFLU_RS15065 -1.3 -3.1 IclR family transcriptional regulator compare
PFLU_RS25730 -1.3 -8.3 PAS domain S-box protein compare
PFLU_RS21740 -1.3 -4.5 Hpt domain-containing protein compare
PFLU_RS08380 -1.2 -5.3 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS00530 -1.2 -1.2 DUF2388 domain-containing protein compare
PFLU_RS16000 -1.2 -3.2 transcriptional regulator FeaR compare
PFLU_RS02625 -1.2 -6.8 ribonuclease R compare
PFLU_RS27375 -1.2 -3.1 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS17160 -1.2 -2.4 hypothetical protein compare
PFLU_RS29875 -1.2 -6.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS28820 -1.2 -1.2 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS28690 -1.2 -6.5 FAD-binding oxidoreductase compare
PFLU_RS08735 -1.2 -1.4 histidine phosphatase family protein compare
PFLU_RS00245 -1.1 -4.0 YheV family putative metal-binding protein compare
PFLU_RS07860 -1.1 -3.4 hypothetical protein compare
PFLU_RS19160 -1.1 -6.4 endopeptidase La compare
PFLU_RS01290 -1.1 -4.9 30S ribosomal protein S6--L-glutamate ligase compare
PFLU_RS08165 -1.1 -1.3 acyl carrier protein compare
PFLU_RS23235 -1.1 -1.8 Arc family DNA-binding protein compare
PFLU_RS10740 -1.1 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
PFLU_RS14995 -1.1 -1.0 response regulator transcription factor compare
PFLU_RS21570 -1.1 -1.3 exonuclease compare
PFLU_RS27595 -1.1 -5.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme conserved
PFLU_RS28665 -1.0 -6.7 threonine ammonia-lyase, biosynthetic compare
PFLU_RS30985 -1.0 -2.1 hypothetical protein compare
PFLU_RS05690 -1.0 -1.7 Grx4 family monothiol glutaredoxin compare
PFLU_RS22105 -1.0 -2.5 cysteine synthase CysM compare
PFLU_RS14290 -1.0 -1.4 response regulator compare
PFLU_RS03610 -1.0 -3.2 redox-regulated ATPase YchF compare
PFLU_RS20330 -1.0 -1.6 cold-shock protein compare
PFLU_RS28965 -1.0 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23065 -1.0 -4.3 phosphate acyltransferase PlsX compare
PFLU_RS31065 -1.0 -2.0 helix-turn-helix domain-containing protein compare
PFLU_RS24825 -1.0 -2.5 Fe-S cluster assembly protein IscX compare
PFLU_RS06165 -0.9 -1.8 hypothetical protein compare
PFLU_RS10950 -0.9 -2.8 homocysteine S-methyltransferase family protein compare
PFLU_RS11215 -0.9 -2.2 ABC transporter ATP-binding protein compare
PFLU_RS14335 -0.9 -1.5 ABC transporter permease compare
PFLU_RS29295 -0.9 -2.4 YjbQ family protein compare
PFLU_RS17700 -0.9 -2.7 GNAT family N-acetyltransferase compare
PFLU_RS19665 -0.9 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS13715 -0.9 -1.1 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS23730 -0.9 -5.2 MurR/RpiR family transcriptional regulator compare
PFLU_RS26660 -0.9 -1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS19555 -0.9 -1.2 histidine phosphatase family protein compare
PFLU_RS01585 -0.9 -3.4 oxidative damage protection protein compare
PFLU_RS29095 -0.9 -7.1 polyphosphate kinase 1 compare
PFLU_RS23315 -0.9 -3.7 aspartate aminotransferase family protein compare
PFLU_RS31435 -0.9 -2.7 ABC transporter ATP-binding protein compare
PFLU_RS23015 -0.9 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS23265 -0.8 -3.4 aspartate kinase compare
PFLU_RS03075 -0.8 -1.0 translation initiation factor Sui1 compare
PFLU_RS25205 -0.8 -2.6 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS16445 -0.8 -1.7 PIG-L family deacetylase compare
PFLU_RS01665 -0.8 -1.4 glutaredoxin 3 compare
PFLU_RS16510 -0.8 -1.5 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS27600 -0.8 -3.6 LysR family transcriptional regulator compare
PFLU_RS20730 -0.8 -1.0 hypothetical protein compare
PFLU_RS31635 -0.8 -1.5 IS21 family transposase compare
PFLU_RS12205 -0.8 -1.9 DNA binding protein compare
PFLU_RS31070 -0.8 -2.6 hypothetical protein compare
PFLU_RS20285 -0.8 -2.9 MerR family transcriptional regulator compare
PFLU_RS16285 -0.8 -2.3 hypothetical protein compare
PFLU_RS26440 -0.8 -1.9 acyl carrier protein compare
PFLU_RS16005 -0.8 -1.8 DUF3156 family protein compare
PFLU_RS05885 -0.8 -2.8 recombinase RecA compare
PFLU_RS14440 -0.8 -0.9 hypothetical protein compare
PFLU_RS10660 -0.8 -1.0 DUF1652 domain-containing protein compare
PFLU_RS22600 -0.8 -1.4 RNA polymerase sigma factor SigX compare
PFLU_RS11475 -0.8 -0.7 histidine kinase compare
PFLU_RS30515 -0.8 -2.5 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS07255 -0.8 -1.8 sulfurtransferase TusA family protein compare
PFLU_RS08445 -0.8 -3.4 MarR family transcriptional regulator compare
PFLU_RS21485 -0.8 -1.5 response regulator compare
PFLU_RS05040 -0.8 -2.4 DUF1120 domain-containing protein compare
PFLU_RS11490 -0.8 -1.7 ABC transporter ATP-binding protein compare
PFLU_RS26925 -0.8 -1.5 hypothetical protein compare
PFLU_RS25550 -0.8 -3.5 DUF3077 domain-containing protein compare
PFLU_RS07560 -0.8 -3.2 allophanate hydrolase subunit 1 compare
PFLU_RS31545 -0.8 -1.3 LysR family transcriptional regulator compare
PFLU_RS29090 -0.7 -3.1 exopolyphosphatase compare
PFLU_RS31535 -0.7 -1.2 hypothetical protein compare
PFLU_RS31490 -0.7 -1.0 hypothetical protein compare
PFLU_RS23545 -0.7 -1.6 SRPBCC family protein compare
PFLU_RS14125 -0.7 -2.4 lysozyme compare
PFLU_RS01910 -0.7 -1.3 sterol-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens SBW25-INTG

For carbon source Potassium acetate across organisms