Experiment set8IT086 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -10.0 -6.8 histidinol-phosphate transaminase compare
BWI76_RS20965 -9.7 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS11965 -8.9 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS23365 -8.3 -5.0 LysR family transcriptional regulator compare
BWI76_RS18940 -7.9 -5.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00855 -7.9 -7.7 argininosuccinate lyase compare
BWI76_RS04255 -7.9 -7.7 threonine synthase compare
BWI76_RS04675 -7.8 -7.2 3-isopropylmalate dehydrogenase compare
BWI76_RS04465 -7.8 -5.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS07065 -7.7 -7.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS02995 -7.6 -7.4 aspartate carbamoyltransferase compare
BWI76_RS04670 -7.6 -10.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS21265 -7.5 -14.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18920 -7.5 -5.2 ATP phosphoribosyltransferase compare
BWI76_RS04470 -7.4 -8.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS07070 -7.4 -5.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS24285 -7.3 -8.7 cystathionine beta-lyase compare
BWI76_RS05835 -7.3 -5.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS00850 -7.3 -7.4 acetylglutamate kinase compare
BWI76_RS04160 -7.1 -5.2 phosphoserine phosphatase compare
BWI76_RS27390 -7.1 -6.9 ribonuclease PH compare
BWI76_RS04250 -7.1 -8.4 homoserine kinase compare
BWI76_RS27385 -7.0 -6.8 orotate phosphoribosyltransferase compare
BWI76_RS25115 -6.9 -8.4 argininosuccinate synthase compare
BWI76_RS00980 -6.9 -12.5 PLP-dependent threonine dehydratase compare
BWI76_RS01655 -6.9 -8.8 homoserine O-succinyltransferase compare
BWI76_RS08385 -6.9 -4.0 citrate (Si)-synthase compare
BWI76_RS20355 -6.9 -3.8 colicin V production protein compare
BWI76_RS04245 -6.8 -14.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS04685 -6.8 -11.3 putative leucine operon leader peptide compare
BWI76_RS05840 -6.7 -6.6 glutamate 5-kinase compare
BWI76_RS01615 -6.7 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS23220 -6.6 -9.0 amino-acid N-acetyltransferase compare
BWI76_RS04665 -6.6 -21.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01610 -6.6 -6.2 phosphoribosylamine--glycine ligase compare
BWI76_RS23920 -6.5 -7.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS09645 -6.5 -2.7 thioredoxin-disulfide reductase compare
BWI76_RS20350 -6.5 -6.8 amidophosphoribosyltransferase compare
BWI76_RS11850 -6.4 -8.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS10990 -6.4 -3.8 dihydroorotase compare
BWI76_RS26085 -6.3 -4.4 3-dehydroquinate synthase compare
BWI76_RS09910 -6.3 -19.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS03010 -6.3 -9.1 ornithine carbamoyltransferase compare
BWI76_RS21475 -6.2 -4.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00785 -6.1 -7.3 cystathionine gamma-synthase compare
BWI76_RS22755 -6.1 -7.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS20895 -6.0 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00835 -6.0 -13.8 phosphoenolpyruvate carboxylase compare
BWI76_RS00990 -5.9 -9.7 ketol-acid reductoisomerase compare
BWI76_RS04645 -5.9 -5.7 3-dehydroquinase compare
BWI76_RS18950 -5.9 -6.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS11840 -5.9 -2.9 tryptophan synthase subunit alpha compare
BWI76_RS21465 -5.8 -4.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS22760 -5.8 -10.8 sulfite reductase subunit beta compare
BWI76_RS00845 -5.7 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04510 -5.7 -3.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS09755 -5.7 -9.2 phosphoserine transaminase compare
BWI76_RS23360 -5.7 -5.5 diaminopimelate decarboxylase compare
BWI76_RS00965 -5.5 -2.2 acetolactate synthase 2 small subunit compare
BWI76_RS00805 -5.4 -5.8 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS01200 -5.4 -3.7 diaminopimelate epimerase compare
BWI76_RS25645 -5.2 -9.2 shikimate dehydrogenase compare
BWI76_RS18935 -5.2 -9.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18955 -5.2 -5.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS13920 -5.1 -6.5 magnesium-translocating P-type ATPase compare
BWI76_RS11860 -5.1 -6.4 anthranilate synthase component I compare
BWI76_RS11845 -5.1 -2.0 tryptophan synthase subunit beta compare
BWI76_RS04680 -5.0 -10.3 2-isopropylmalate synthase compare
BWI76_RS26570 -5.0 -4.8 anion permease compare
BWI76_RS22765 -4.9 -12.3 sulfite reductase subunit alpha compare
BWI76_RS11855 -4.9 -5.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS18925 -4.8 -6.4 histidinol dehydrogenase compare
BWI76_RS00975 -4.7 -7.3 dihydroxy-acid dehydratase compare
BWI76_RS00400 -4.5 -3.1 glutamine synthetase compare
BWI76_RS15115 -4.4 -3.1 MFS transporter compare
BWI76_RS02735 -4.4 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS04240 -4.3 -3.1 thr operon leader peptide compare
BWI76_RS00180 -4.3 -2.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS17720 -4.3 -1.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00985 -4.2 -8.2 transcriptional regulator IlvY compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS20435 -3.9 -2.3 chorismate synthase compare
BWI76_RS02530 -3.7 -4.4 tRNA dimethylallyltransferase compare
BWI76_RS20650 -3.6 -2.5 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01800 -3.6 -4.6 glucose-6-phosphate isomerase compare
BWI76_RS26055 -3.5 -7.3 siroheme synthase compare
BWI76_RS23230 -3.4 -2.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS19840 -3.2 -1.8 hypothetical protein compare
BWI76_RS23885 -3.1 -2.5 2-octaprenylphenol hydroxylase compare
BWI76_RS22690 -3.1 -3.5 adenylyl-sulfate kinase compare
BWI76_RS09760 -3.0 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS26000 -2.9 -8.9 aspartate aminotransferase family protein compare
BWI76_RS00960 -2.8 -4.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS01210 -2.8 -2.9 tyrosine recombinase XerC compare
BWI76_RS21370 -2.7 -3.3 ATP-dependent RNA helicase SrmB compare
BWI76_RS23480 -2.7 -12.0 EAL domain-containing protein compare
BWI76_RS01275 -2.7 -6.9 LysR family transcriptional regulator compare
BWI76_RS15825 -2.7 -1.8 hypothetical protein compare
BWI76_RS06525 -2.7 -3.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS25065 -2.5 -4.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS05200 -2.5 -3.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS23265 -2.3 -4.4 hypothetical protein compare
BWI76_RS09660 -2.3 -2.1 DNA translocase FtsK compare
BWI76_RS20640 -2.3 -3.8 cysteine synthase A compare
BWI76_RS02410 -2.2 -2.2 EF-P beta-lysylation protein EpmB compare
BWI76_RS13915 -2.1 -4.4 magnesium transport protein MgtC compare
BWI76_RS01185 -2.1 -3.5 adenylate cyclase compare
BWI76_RS01350 -2.0 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS05015 -1.9 -1.9 transcriptional regulator compare
BWI76_RS22700 -1.9 -3.1 sulfate adenylyltransferase subunit 2 compare
BWI76_RS22695 -1.8 -4.1 sulfate adenylyltransferase compare
BWI76_RS12090 -1.8 -1.3 HNH endonuclease compare
BWI76_RS11520 -1.7 -1.6 hypothetical protein compare
BWI76_RS20970 -1.7 -1.8 phosphoribosylglycinamide formyltransferase compare
BWI76_RS04705 -1.7 -5.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS15110 -1.7 -7.6 putative excinuclease ABC subunit A compare
BWI76_RS17975 -1.7 -3.4 tail-specific protease compare
BWI76_RS00390 -1.6 -3.9 two-component system sensor histidine kinase NtrB compare
BWI76_RS15225 -1.6 -1.4 DeoR family transcriptional regulator compare
BWI76_RS18755 -1.6 -1.4 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS08330 -1.6 -1.7 hypothetical protein compare
BWI76_RS09335 -1.6 -1.6 baseplate assembly protein W compare
BWI76_RS11130 -1.6 -6.4 PTS glucose transporter subunit IIBC compare
BWI76_RS06765 -1.6 -4.1 transcriptional regulator compare
BWI76_RS06530 -1.5 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS19240 -1.5 -1.8 ABC transporter substrate-binding protein compare
BWI76_RS16485 -1.5 -1.8 ribonuclease T compare
BWI76_RS20380 -1.5 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS04515 -1.5 -1.7 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS20440 -1.5 -1.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS25425 -1.5 -1.9 arginine repressor compare
BWI76_RS21165 -1.5 -1.9 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS25335 -1.5 -4.0 stringent starvation protein A compare
BWI76_RS21140 -1.4 -2.8 molecular chaperone HscA compare
BWI76_RS00715 -1.4 -2.2 two-component sensor histidine kinase compare
BWI76_RS15850 -1.4 -1.0 DUF1317 domain-containing protein compare
BWI76_RS00355 -1.4 -3.9 DNA polymerase I compare
BWI76_RS26075 -1.4 -2.3 DNA adenine methylase compare
BWI76_RS18360 -1.4 -1.1 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS24025 -1.4 -5.2 agmatinase compare
BWI76_RS14980 -1.3 -1.6 hypothetical protein compare
BWI76_RS25070 -1.3 -1.8 hypothetical protein compare
BWI76_RS25315 -1.3 -7.6 glutamate synthase large subunit compare
BWI76_RS25320 -1.3 -4.5 glutamate synthase compare
BWI76_RS04270 -1.3 -3.2 transaldolase compare
BWI76_RS20995 -1.3 -5.8 RNA degradosome polyphosphate kinase compare
BWI76_RS27440 -1.3 -2.6 DNA helicase RecG compare
BWI76_RS00970 -1.3 -2.2 branched chain amino acid aminotransferase compare
BWI76_RS13595 -1.3 -2.3 transcriptional regulator compare
BWI76_RS19025 -1.2 -7.5 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS05450 -1.2 -1.7 ribonuclease HI compare
BWI76_RS13445 -1.2 -1.6 alpha/beta hydrolase compare
BWI76_RS19870 -1.2 -2.4 malate:quinone oxidoreductase compare
BWI76_RS25280 -1.2 -2.1 RNase adaptor protein RapZ compare
BWI76_RS15215 -1.2 -1.1 N-acetyltransferase compare
BWI76_RS06015 -1.1 -1.5 hypothetical protein compare
BWI76_RS02855 -1.1 -1.2 cytochrome B562 compare
BWI76_RS06770 -1.1 -6.2 Hha toxicity attenuator compare
BWI76_RS21480 -1.1 -2.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS05235 -1.1 -1.3 hypothetical protein compare
BWI76_RS18715 -1.1 -3.8 hypothetical protein compare
BWI76_RS06185 -1.1 -3.7 shikimate kinase II compare
BWI76_RS14435 -1.1 -1.5 glutamine ABC transporter ATP-binding protein compare
BWI76_RS21980 -1.1 -2.8 hypothetical protein compare
BWI76_RS15840 -1.1 -1.8 prophage protein compare
BWI76_RS25060 -1.0 -2.3 lipoprotein NlpI compare
BWI76_RS14755 -1.0 -1.6 SIS domain-containing protein compare
BWI76_RS17775 -1.0 -2.7 hypothetical protein compare
BWI76_RS22935 -1.0 -1.3 L-fucose mutarotase compare
BWI76_RS18710 -1.0 -7.0 GGDEF-domain containing protein compare
BWI76_RS16470 -1.0 -1.2 transcriptional repressor NemR compare
BWI76_RS11435 -1.0 -1.6 hypothetical protein compare
BWI76_RS08665 -1.0 -2.9 6-phosphogluconolactonase compare
BWI76_RS12375 -1.0 -2.4 DNA-invertase hin compare
BWI76_RS15835 -1.0 -0.7 hypothetical protein compare
BWI76_RS07595 -1.0 -2.3 putative oxidoreductase compare
BWI76_RS06800 -1.0 -1.2 DUF2496 domain-containing protein compare
BWI76_RS00380 -1.0 -3.4 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS01555 -1.0 -5.4 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS22705 -1.0 -4.7 siroheme synthase compare
BWI76_RS24280 -1.0 -2.4 biopolymer transporter ExbB compare
BWI76_RS16675 -1.0 -1.6 ABC transporter compare
BWI76_RS11410 -0.9 -2.3 leucine efflux protein compare
BWI76_RS16490 -0.9 -1.6 glutaredoxin compare
BWI76_RS07465 -0.9 -2.5 TetR family transcriptional regulator compare
BWI76_RS26590 -0.9 -1.7 transcriptional regulator compare
BWI76_RS22235 -0.9 -1.8 transcriptional regulator GutM compare
BWI76_RS00385 -0.9 -4.3 nitrogen assimilation regulatory protein compare
BWI76_RS24075 -0.9 -3.2 glutathione synthase compare
BWI76_RS08275 -0.9 -1.2 LexA regulated protein compare
BWI76_RS09655 -0.9 -2.3 leucine-responsive regulatory protein compare
BWI76_RS09650 -0.9 -3.3 hypothetical protein compare
BWI76_RS14300 -0.9 -1.8 hypothetical protein compare
BWI76_RS19690 -0.9 -2.2 LysR family transcriptional regulator compare
BWI76_RS19375 -0.9 -1.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS01530 -0.9 -3.2 2-iminoacetate synthase ThiH compare
BWI76_RS12195 -0.9 -2.0 hypothetical protein compare
BWI76_RS20565 -0.9 -0.9 hypothetical protein compare
BWI76_RS07380 -0.9 -1.9 hypothetical protein compare
BWI76_RS19845 -0.9 -2.2 phosphatase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms