Experiment set8IT085 for Pseudomonas fluorescens FW300-N2C3

Compare to:

10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
AO356_21405 -4.2 -5.6 3-isopropylmalate dehydratase compare
AO356_13135 -4.1 -14.2 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
AO356_21495 -3.8 -15.9 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
AO356_21440 -3.6 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_09800 -3.6 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_21415 -3.5 -10.3 3-isopropylmalate dehydrogenase compare
AO356_13170 -3.5 -16.3 spermidine/putrescine ABC transporter permease compare
AO356_08635 -3.5 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_13165 -3.5 -13.1 transporter compare
AO356_08235 -3.5 -7.3 histidine kinase compare
AO356_13175 -3.4 -8.1 spermidine/putrescine ABC transporter permease compare
AO356_13410 -3.4 -11.4 homoserine O-acetyltransferase compare
AO356_13405 -3.4 -10.6 methionine biosynthesis protein MetW compare
AO356_19900 -3.3 -12.1 lysine transporter LysE compare
AO356_19925 -3.3 -11.7 AsnC family transcriptional regulator compare
AO356_14440 -3.3 -5.2 indole-3-glycerol-phosphate synthase compare
AO356_13155 -3.3 -14.3 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_13145 -3.2 -11.3 glutamine synthetase compare
AO356_21400 -3.2 -7.3 isopropylmalate isomerase compare
AO356_14435 -3.1 -7.7 anthranilate phosphoribosyltransferase compare
AO356_06970 -3.1 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_12780 -3.1 -8.4 argininosuccinate lyase compare
AO356_10915 -3.1 -8.7 tryptophan synthase subunit beta compare
AO356_09520 -3.1 -6.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_09815 -3.0 -6.8 imidazoleglycerol-phosphate dehydratase compare
AO356_12580 -3.0 -13.5 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
AO356_13250 -3.0 -10.1 dihydroxy-acid dehydratase compare
AO356_14420 -2.9 -14.9 anthranilate synthase compare
AO356_13150 -2.9 -17.4 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
AO356_21465 -2.9 -4.9 amidophosphoribosyltransferase compare
AO356_16075 -2.9 -3.8 Fis family transcriptional regulator compare
AO356_10720 -2.8 -12.3 succinate-semialdehyde dehydrogenase compare
AO356_06965 -2.8 -7.7 histidinol dehydrogenase compare
AO356_16180 -2.8 -14.4 ketol-acid reductoisomerase compare
AO356_00555 -2.7 -10.4 sulfite reductase compare
AO356_09540 -2.7 -1.8 twin-arginine protein translocation system subunit TatC compare
AO356_09525 -2.7 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_00560 -2.6 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_06550 -2.6 -10.9 2-isopropylmalate synthase compare
AO356_16175 -2.6 -5.6 acetolactate synthase 3 regulatory subunit compare
AO356_10300 -2.6 -5.3 3-phosphoglycerate dehydrogenase compare
AO356_02175 -2.6 -9.2 transaldolase compare
AO356_19520 -2.6 -5.5 isochorismatase compare
AO356_18325 -2.6 -8.5 argininosuccinate synthase compare
AO356_09810 -2.5 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_10000 -2.4 -5.4 hypothetical protein compare
AO356_13160 -2.4 -11.1 putrescine ABC transporter, substrate-binding component (from data) conserved
AO356_18275 -2.3 -8.7 ornithine carbamoyltransferase compare
AO356_02265 -2.3 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_19090 -2.2 -1.5 phosphoribosylaminoimidazole synthetase compare
AO356_10910 -2.2 -6.3 tryptophan synthase subunit alpha compare
AO356_01555 -2.2 -8.2 acyl-CoA dehydrogenase compare
AO356_22200 -2.2 -6.4 sirohydrochlorin ferrochelatase compare
AO356_12620 -2.2 -12.1 amino acid dehydrogenase compare
AO356_10005 -2.1 -9.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_12520 -2.1 -1.4 orotate phosphoribosyltransferase compare
AO356_17890 -2.1 -2.6 H-NS histone compare
AO356_08735 -2.1 -11.3 phosphoserine phosphatase compare
AO356_21470 -2.1 -7.4 O-succinylhomoserine sulfhydrylase compare
AO356_17020 -2.1 -5.7 cytochrome D ubiquinol oxidase subunit III compare
AO356_16170 -2.0 -6.2 acetolactate synthase 3 catalytic subunit compare
AO356_24845 -2.0 -2.4 ATPase compare
AO356_20475 -2.0 -1.7 hypothetical protein compare
AO356_11055 -2.0 -2.2 long-chain acyl-CoA thioester hydrolase compare
AO356_19425 -2.0 -2.1 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03800 -1.9 -2.5 histidine kinase compare
AO356_14430 -1.9 -6.5 anthranilate synthase compare
AO356_13085 -1.9 -4.1 N-acetylglutamate synthase compare
AO356_19795 -1.9 -2.6 glycerol-3-phosphate dehydrogenase compare
AO356_07390 -1.8 -1.1 polyribonucleotide nucleotidyltransferase compare
AO356_04560 -1.8 -1.6 serine peptidase compare
AO356_14305 -1.8 -14.0 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_13605 -1.8 -4.2 5,10-methylenetetrahydrofolate reductase compare
AO356_06960 -1.8 -7.6 histidinol-phosphate aminotransferase compare
AO356_03070 -1.8 -10.2 histidine kinase compare
AO356_10140 -1.8 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_06995 -1.7 -8.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_06690 -1.7 -1.6 queuine tRNA-ribosyltransferase compare
AO356_14315 -1.7 -14.3 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_20155 -1.7 -5.4 phosphate acyltransferase compare
AO356_10340 -1.7 -10.4 phosphoserine phosphatase compare
AO356_12615 -1.7 -10.0 AsnC family transcriptional regulator compare
AO356_20830 -1.7 -2.9 phosphoadenosine phosphosulfate reductase compare
AO356_08930 -1.7 -3.3 heptose kinase compare
AO356_22150 -1.7 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_19085 -1.6 -7.5 phosphoribosylglycinamide formyltransferase compare
AO356_16080 -1.6 -9.5 ATPase compare
AO356_13140 -1.6 -5.9 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO356_02580 -1.5 -4.0 GntR family transcriptional regulator compare
AO356_02875 -1.5 -4.9 peroxiredoxin compare
AO356_03095 -1.5 -5.1 protease HtpX compare
AO356_14310 -1.5 -10.3 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_07495 -1.5 -2.2 molecular chaperone DnaJ compare
AO356_15325 -1.5 -1.3 hypothetical protein compare
AO356_12525 -1.5 -3.0 acetylglutamate kinase compare
AO356_23155 -1.5 -7.6 RpiR family transcriptional regulator compare
AO356_11420 -1.4 -8.6 histidine kinase compare
AO356_01245 -1.4 -5.5 glycogen branching protein compare
AO356_16665 -1.4 -8.9 sulfate adenylyltransferase compare
AO356_07480 -1.4 -1.2 carbamoyl phosphate synthase large subunit compare
AO356_06990 -1.4 -6.1 toluene tolerance protein compare
AO356_07195 -1.4 -4.9 GntR family transcriptional regulator compare
AO356_13480 -1.4 -3.7 pilus assembly protein PilG compare
AO356_08870 -1.4 -5.4 polymerase compare
AO356_15925 -1.3 -2.9 ribosomal large subunit pseudouridine synthase D compare
AO356_29160 -1.3 -2.7 (2Fe-2S)-binding protein compare
AO356_08880 -1.3 -3.8 glycosyl transferase compare
AO356_16070 -1.3 -4.7 poly(A) polymerase compare
AO356_07000 -1.3 -3.7 ABC transporter permease compare
AO356_21320 -1.3 -1.8 tRNA-Asn compare
AO356_03725 -1.3 -3.2 histidine kinase compare
AO356_03420 -1.3 -6.2 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_09795 -1.3 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_16670 -1.2 -8.3 adenylylsulfate kinase compare
AO356_06695 -1.2 -4.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_25750 -1.2 -1.9 GntR family transcriptional regulator compare
AO356_26455 -1.2 -1.8 hypothetical protein compare
AO356_13455 -1.2 -2.8 uracil phosphoribosyltransferase compare
AO356_09995 -1.2 -5.4 LysR family transcriptional regulator compare
AO356_30345 -1.2 -3.2 IclR family transcriptional regulator compare
AO356_14155 -1.2 -4.7 dethiobiotin synthetase compare
AO356_20470 -1.1 -2.0 hypothetical protein compare
AO356_02190 -1.1 -6.5 hypothetical protein compare
AO356_18855 -1.1 -1.9 hypothetical protein compare
AO356_22145 -1.1 -5.8 ATP-dependent Clp protease adaptor ClpS compare
AO356_24990 -1.1 -2.0 4-oxalocrotonate tautomerase compare
AO356_08890 -1.1 -5.3 glycosyltransferase compare
AO356_02325 -1.1 -1.4 3-ketoacyl-CoA thiolase compare
AO356_01740 -1.1 -1.1 DNA-binding protein compare
AO356_14020 -1.1 -2.2 hypothetical protein compare
AO356_07400 -1.1 -3.8 pseudouridine synthase compare
AO356_03180 -1.1 -4.1 CysB family transcriptional regulator compare
AO356_02270 -1.0 -7.8 transcription-repair coupling factor compare
AO356_10345 -1.0 -1.8 RNA pyrophosphohydrolase compare
AO356_17950 -1.0 -4.2 histidine kinase compare
AO356_15450 -1.0 -8.1 AMP nucleosidase compare
AO356_14145 -1.0 -3.4 transporter compare
AO356_28560 -1.0 -4.1 transcriptional regulator compare
AO356_11585 -1.0 -1.6 lipid A biosynthesis lauroyl acyltransferase compare
AO356_16085 -1.0 -3.7 MFS transporter compare
AO356_05895 -1.0 -4.2 protein-L-isoaspartate O-methyltransferase compare
AO356_20125 -1.0 -4.0 23S rRNA pseudouridylate synthase compare
AO356_22950 -1.0 -1.8 peptidylprolyl isomerase compare
AO356_14790 -1.0 -4.8 MFS transporter compare
AO356_00385 -1.0 -2.0 peptidylprolyl isomerase compare
AO356_19840 -1.0 -4.3 histidine kinase compare
AO356_24450 -1.0 -2.9 microcin ABC transporter ATP-binding protein compare
AO356_00995 -1.0 -4.2 carbon storage regulator CsrA compare
AO356_26485 -1.0 -1.9 hypothetical protein compare
AO356_14135 -1.0 -5.6 biotin synthase compare
AO356_15380 -0.9 -4.4 hypothetical protein compare
AO356_09300 -0.9 -1.1 type II secretory protein PulM compare
AO356_01755 -0.9 -1.4 trigger factor compare
AO356_06005 -0.9 -2.7 zinc metallopeptidase RseP compare
AO356_27180 -0.9 -1.8 hypothetical protein compare
AO356_02465 -0.9 -0.8 carbonate dehydratase compare
AO356_22795 -0.9 -0.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_09425 -0.9 -4.5 malate dehydrogenase compare
AO356_04555 -0.9 -6.3 peptidase M48 compare
AO356_17070 -0.9 -0.8 cytochrome B compare
AO356_15735 -0.9 -5.6 ABC transporter ATP-binding protein compare
AO356_24965 -0.9 -2.1 GntR family transcriptional regulator compare
AO356_00545 -0.9 -4.8 methionine synthase compare
AO356_12885 -0.9 -4.3 hypothetical protein compare
AO356_22250 -0.9 -3.7 GCN5 family acetyltransferase compare
AO356_19835 -0.9 -1.7 histidine kinase compare
AO356_21275 -0.9 -1.4 peptidase compare
AO356_18245 -0.9 -3.2 DeoR family transcriptional regulator compare
AO356_06415 -0.9 -2.6 cytochrome C assembly protein compare
AO356_18535 -0.9 -3.0 class I peptide chain release factor compare
AO356_09640 -0.8 -2.9 histidine utilization repressor compare
AO356_25720 -0.8 -1.5 polyamine ABC transporter permease compare
AO356_11610 -0.8 -1.0 glycerol acyltransferase compare
AO356_08545 -0.8 -3.1 NUDIX hydrolase compare
AO356_08380 -0.8 -2.0 acetyltransferase compare
AO356_17200 -0.8 -5.7 histidine kinase compare
AO356_12375 -0.8 -5.4 histidine kinase compare
AO356_12710 -0.8 -3.9 hypothetical protein compare
AO356_29270 -0.8 -1.6 ABC transporter permease compare
AO356_18775 -0.8 -1.9 aspartate kinase compare
AO356_04055 -0.8 -0.9 hypothetical protein compare
AO356_29315 -0.8 -1.9 acyl-CoA dehydrogenase compare
AO356_21435 -0.8 -1.6 pseudouridine synthase compare
AO356_26390 -0.8 -2.2 hypothetical protein compare
AO356_22095 -0.8 -2.3 cupin compare
AO356_18780 -0.8 -1.7 carbon storage regulator compare
AO356_17970 -0.8 -6.0 porin compare
AO356_01745 -0.8 -0.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_25420 -0.8 -1.4 chemotaxis protein CheY compare
AO356_21515 -0.8 -1.1 antitoxin compare
AO356_17985 -0.7 -3.5 cold-shock protein compare
AO356_03805 -0.7 -5.4 chemotaxis protein CheY compare
AO356_00715 -0.7 -2.7 hypothetical protein compare
AO356_26180 -0.7 -2.5 hypothetical protein compare
AO356_17960 -0.7 -2.9 nucleotide-binding protein compare
AO356_14150 -0.7 -3.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_17770 -0.7 -1.0 hypothetical protein compare
AO356_03620 -0.7 -2.0 cytochrome C compare
AO356_15290 -0.7 -2.3 gamma-glutamyl phosphate reductase compare
AO356_26360 -0.7 -2.1 enoyl-CoA hydratase compare


Specific Phenotypes

For 5 genes in this experiment

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2C3

For resistance P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine dihydrochloride across organisms