Experiment set8IT085 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS18605 +1.6 4.3 oxidoreductase molybdopterin-binding protein compare
BWI76_RS15035 +1.4 1.8 metal ABC transporter permease compare
BWI76_RS25285 +1.3 2.9 HPr family phosphocarrier protein compare
BWI76_RS20785 +1.2 2.3 ethanolamine utilization protein EutJ compare
BWI76_RS21810 +1.2 1.9 universal stress protein compare
BWI76_RS15785 +1.1 3.8 replication protein compare
BWI76_RS08380 +1.0 1.6 endonuclease VIII compare
BWI76_RS07985 +1.0 1.4 fluoride ion transporter CrcB compare
BWI76_RS01380 +0.9 2.3 YigZ family protein compare
BWI76_RS11525 +0.9 2.4 HNH endonuclease compare
BWI76_RS07855 +0.9 2.2 PucR family transcriptional regulator compare
BWI76_RS24945 +0.9 1.6 glutamine amidotransferase compare
BWI76_RS14320 +0.9 1.2 hypothetical protein compare
BWI76_RS09390 +0.9 1.9 phage tail protein compare
BWI76_RS09305 +0.9 1.7 hypothetical protein compare
BWI76_RS06290 +0.9 2.5 ACP phosphodiesterase compare
BWI76_RS24955 +0.9 2.7 hypothetical protein compare
BWI76_RS10730 +0.8 2.1 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS17645 +0.8 1.3 hypothetical protein compare
BWI76_RS09860 +0.8 3.0 hypothetical protein compare
BWI76_RS09730 +0.8 1.5 pyruvate formate lyase 1-activating protein compare
BWI76_RS16325 +0.8 1.7 adenosine deaminase compare
BWI76_RS06930 +0.8 3.7 iron export ABC transporter permease subunit FetB compare
BWI76_RS06080 +0.8 3.3 taurine dioxygenase compare
BWI76_RS08585 +0.7 2.2 nicotinamide riboside transporter PnuC compare
BWI76_RS13545 +0.7 1.3 N-acetyltransferase compare
BWI76_RS19995 +0.7 1.5 IclR family transcriptional regulator compare
BWI76_RS11430 +0.7 1.1 lipoprotein compare
BWI76_RS26245 +0.7 2.7 transcriptional regulator compare
BWI76_RS22625 +0.7 1.7 transcriptional regulator compare
BWI76_RS15920 +0.7 1.4 hypothetical protein compare
BWI76_RS24500 +0.7 2.1 urease subunit gamma compare
BWI76_RS05810 +0.7 1.3 hypothetical protein compare
BWI76_RS10820 +0.7 1.8 iron uptake system protein EfeO compare
BWI76_RS26745 +0.7 1.8 antibiotic biosynthesis monooxygenase compare
BWI76_RS09085 +0.7 2.9 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS26330 +0.7 1.7 ABC transporter ATP-binding protein compare
BWI76_RS21325 +0.7 2.0 hypothetical protein compare
BWI76_RS17070 +0.7 2.8 phosphoenolpyruvate synthase regulatory protein compare
BWI76_RS11195 +0.7 2.4 multiple stress resistance protein BhsA compare
BWI76_RS09635 +0.7 0.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS06205 +0.7 3.6 recombination-associated protein RdgC compare
BWI76_RS14650 +0.7 1.7 helix-turn-helix transcriptional regulator compare
BWI76_RS24035 +0.7 2.3 hypothetical protein compare
BWI76_RS20155 +0.7 1.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS14665 +0.7 1.9 minor fimbrial subunit YfcQ compare
BWI76_RS10675 +0.7 3.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS13160 +0.6 1.6 azoreductase compare
BWI76_RS14075 +0.6 0.6 TetR family transcriptional regulator compare
BWI76_RS06925 +0.6 4.4 iron ABC transporter ATP-binding protein FetA compare
BWI76_RS19750 +0.6 2.0 elongation factor P-like protein YeiP compare
BWI76_RS04970 +0.6 1.3 ABC transporter permease compare
BWI76_RS16950 +0.6 1.4 TetR family transcriptional regulator compare
BWI76_RS27425 +0.6 0.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS18335 +0.6 3.8 DNA-binding response regulator compare
BWI76_RS12045 +0.6 0.7 hypothetical protein compare
BWI76_RS04605 +0.6 1.2 thiamine ABC transporter ATP-binding protein compare
BWI76_RS20930 +0.6 1.8 arsenate reductase (glutaredoxin) compare
BWI76_RS18090 +0.6 2.3 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS16800 +0.6 1.8 amino acid ABC transporter permease compare
BWI76_RS12870 +0.6 1.6 putative phytanoyl-CoA dioxygenase compare
BWI76_RS06120 +0.6 1.4 membrane protein compare
BWI76_RS21460 +0.6 1.3 translation inhibitor protein RaiA compare
BWI76_RS13420 +0.6 1.3 ABC transporter permease compare
BWI76_RS12595 +0.6 2.2 hypothetical protein compare
BWI76_RS26890 +0.6 0.6 hypothetical protein compare
BWI76_RS06285 +0.6 2.7 peroxiredoxin compare
BWI76_RS19450 +0.6 1.4 hypothetical protein compare
BWI76_RS06745 +0.6 1.5 N-acetyltransferase GCN5 compare
BWI76_RS20940 +0.6 2.1 uracil/xanthine transporter compare
BWI76_RS02690 +0.6 1.8 hypothetical protein compare
BWI76_RS27195 +0.6 2.6 alpha-hydroxy-acid oxidizing enzyme compare
BWI76_RS26405 +0.6 0.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS08720 +0.6 1.1 imidazolonepropionase compare
BWI76_RS22815 +0.6 3.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS23970 +0.6 1.9 mechanosensitive ion channel protein MscS compare
BWI76_RS00140 +0.6 1.0 phosphate transport system regulator PhoU compare
BWI76_RS10640 +0.6 1.2 AraC family transcriptional regulator compare
BWI76_RS11820 +0.6 1.0 short-chain dehydrogenase/reductase SDR compare
BWI76_RS24265 +0.6 2.2 dienelactone hydrolase compare
BWI76_RS07785 +0.6 1.4 transcriptional regulator compare
BWI76_RS11675 +0.6 1.9 arginine N-succinyltransferase compare
BWI76_RS15980 +0.6 1.4 lysine transporter LysE compare
BWI76_RS20710 +0.6 2.2 dyp-type peroxidase family protein compare
BWI76_RS13360 +0.6 2.0 benzoate transporter compare
BWI76_RS10930 +0.6 3.7 glucan biosynthesis protein G compare
BWI76_RS20165 +0.6 1.5 NADH-quinone oxidoreductase subunit G compare
BWI76_RS14090 +0.6 1.8 polyketide cyclase compare
BWI76_RS25920 +0.6 1.8 peptidylprolyl isomerase compare
BWI76_RS11515 +0.6 1.2 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS18420 +0.6 1.9 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS10745 +0.6 0.8 hypothetical protein compare
BWI76_RS14770 +0.6 1.0 PTS IIA 2 domain protein compare
BWI76_RS17325 +0.6 2.3 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS27050 +0.6 3.2 hypothetical protein compare
BWI76_RS14775 +0.6 1.3 creatinine amidohydrolase compare
BWI76_RS12065 +0.5 3.0 hypothetical protein compare
BWI76_RS23255 +0.5 2.3 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS20135 +0.5 1.8 NADH-quinone oxidoreductase subunit M compare
BWI76_RS17400 +0.5 0.9 transporter compare
BWI76_RS17675 +0.5 1.3 hypothetical protein compare
BWI76_RS19520 +0.5 2.3 acetyltransferase GCN5 compare
BWI76_RS09080 +0.5 1.9 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS26280 +0.5 2.0 hypothetical protein compare
BWI76_RS09690 +0.5 1.1 dimethyl sulfoxide reductase compare
BWI76_RS08770 +0.5 2.5 malonyl-ACP O-methyltransferase BioC compare
BWI76_RS10570 +0.5 1.6 cysteine ABC transporter substrate-binding protein compare
BWI76_RS16210 +0.5 1.1 hypothetical protein compare
BWI76_RS11725 +0.5 2.4 PTS sugar transporter subunit IIB compare
BWI76_RS19860 +0.5 1.2 hypothetical protein compare
BWI76_RS21715 +0.5 1.6 transcriptional regulator compare
BWI76_RS22450 +0.5 0.9 selenoprotein W-related protein compare
BWI76_RS06895 +0.5 1.8 biopolymer transporter ExbB compare
BWI76_RS08110 +0.5 1.4 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS01650 +0.5 2.0 acetyltransferase compare
BWI76_RS22310 +0.5 2.6 hydrogenase 3 small subunit compare
BWI76_RS15285 +0.5 1.1 stress protection protein MarC compare
BWI76_RS16375 +0.5 0.8 electron transport complex subunit G compare
BWI76_RS02810 +0.5 1.9 sugar ABC transporter permease YjfF compare
BWI76_RS08815 +0.5 1.3 cyclic pyranopterin phosphate synthase compare
BWI76_RS20180 +0.5 2.0 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS04165 +0.5 2.5 DNA repair protein RadA compare
BWI76_RS20130 +0.5 3.2 NADH-quinone oxidoreductase subunit N compare
BWI76_RS10530 +0.5 0.8 GntR family transcriptional regulator with compare
BWI76_RS15345 +0.5 1.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS00270 +0.5 2.3 D-ribose pyranase (EC 5.4.99.62) (from data) compare
BWI76_RS24975 +0.5 3.0 U32 family peptidase compare
BWI76_RS01190 +0.5 1.7 iron donor protein CyaY compare
BWI76_RS06420 +0.5 1.7 oxidoreductase compare
BWI76_RS06235 +0.5 1.2 PAS domain-containing sensor histidine kinase compare
BWI76_RS15235 +0.5 1.7 hypothetical protein compare
BWI76_RS21915 +0.5 2.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS12570 +0.5 1.6 DUF1365 domain-containing protein compare
BWI76_RS09515 +0.5 1.1 arginine ABC transporter substrate-binding protein compare
BWI76_RS15040 +0.5 2.4 putative 2-nitropropane dioxygenase compare
BWI76_RS25305 +0.5 2.1 TIGR01212 family radical SAM protein compare
BWI76_RS24825 +0.5 1.0 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS12640 +0.5 2.2 hypothetical protein compare
BWI76_RS07645 +0.5 0.6 short-chain dehydrogenase/reductase compare
BWI76_RS16315 +0.5 0.9 SirA-like protein compare
BWI76_RS09440 +0.5 1.4 hypothetical protein compare
BWI76_RS20560 +0.5 1.9 hypothetical protein compare
BWI76_RS01135 +0.5 2.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS17860 +0.5 1.2 YoaH family protein compare
BWI76_RS14065 +0.5 0.6 hypothetical protein compare
BWI76_RS08755 +0.5 1.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
BWI76_RS18830 +0.5 2.5 protein NifY compare
BWI76_RS08805 +0.5 2.4 gluconeogenesis factor compare
BWI76_RS13210 +0.5 1.4 aldehyde dehydrogenase compare
BWI76_RS18175 +0.5 1.4 hydrolase compare
BWI76_RS15360 +0.5 1.3 hypothetical protein compare
BWI76_RS12975 +0.5 2.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS17420 +0.5 1.9 hypothetical protein compare
BWI76_RS05965 +0.5 1.2 hypothetical protein compare
BWI76_RS12535 +0.5 1.7 hypothetical protein compare
BWI76_RS15630 +0.5 1.7 hypothetical protein compare
BWI76_RS13880 +0.5 2.2 lysine transporter LysE compare
BWI76_RS20190 +0.5 2.1 NADH-quinone oxidoreductase subunit A compare
BWI76_RS16320 +0.5 2.3 methionine ABC transporter substrate-binding protein compare
BWI76_RS10725 +0.5 1.6 hypothetical protein compare
BWI76_RS03015 +0.5 1.7 RNase E inhibitor protein compare
BWI76_RS16460 +0.5 2.7 oxidoreductase compare
BWI76_RS24930 +0.5 1.7 osmotically-inducible protein OsmY compare
BWI76_RS09490 +0.5 1.5 DNA-binding response regulator compare
BWI76_RS21410 +0.5 2.1 lipoprotein compare
BWI76_RS09540 +0.5 1.0 hypothetical protein compare
BWI76_RS16860 +0.5 1.8 acyl-CoA dehydrogenase compare
BWI76_RS25380 +0.5 1.4 oxaloacetate decarboxylase subunit beta compare
BWI76_RS20730 +0.5 1.0 hypothetical protein compare
BWI76_RS11110 +0.5 1.3 cell division protein YceG compare
BWI76_RS00075 +0.5 1.2 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS16785 +0.5 1.5 peptidase M20 compare
BWI76_RS01585 +0.5 1.6 transcriptional regulator compare
BWI76_RS19885 +0.5 1.7 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS16900 +0.5 1.1 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS00330 +0.5 2.9 molybdenum cofactor guanylyltransferase compare
BWI76_RS10920 +0.5 1.9 putative TetR family transcriptional regulator compare
BWI76_RS15260 +0.5 0.8 hypothetical protein compare
BWI76_RS16130 +0.5 1.4 3-carboxy-cis,cis-muconate cycloisomerase compare
BWI76_RS24470 +0.5 2.6 hypothetical protein compare
BWI76_RS17375 +0.5 1.3 nitrate ABC transporter, permease protein compare
BWI76_RS26150 +0.5 1.5 molecular chaperone Hsp33 compare
BWI76_RS02440 +0.5 0.8 fumarate reductase subunit D compare
BWI76_RS10500 +0.5 1.2 flavoprotein monooxygenase compare
BWI76_RS06540 +0.5 1.4 DNA-binding protein HU-beta compare
BWI76_RS12330 +0.4 2.0 hypothetical protein compare
BWI76_RS11810 +0.4 1.2 outer membrane protein OmpW compare
BWI76_RS17805 +0.4 0.7 membrane protein compare
BWI76_RS19770 +0.4 1.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS25420 +0.4 2.3 malate dehydrogenase compare
BWI76_RS24725 +0.4 2.4 altronate hydrolase compare
BWI76_RS23325 +0.4 1.5 hypothetical protein compare
BWI76_RS19040 +0.4 2.7 hypothetical protein compare
BWI76_RS12980 +0.4 1.7 AraC family transcriptional regulator compare
BWI76_RS22130 +0.4 1.2 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS16030 +0.4 1.8 malonate decarboxylase acyl carrier protein compare
BWI76_RS21070 +0.4 0.9 outer membrane protein assembly factor BamB compare
BWI76_RS21115 +0.4 1.0 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS27905 +0.4 1.4 heat-shock protein IbpB compare
BWI76_RS10330 +0.4 1.4 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms