Experiment set8IT085 for Herbaspirillum seropedicae SmR1

Compare to:

Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
HSERO_RS17110 -6.9 -3.8 ribonuclease H compare
HSERO_RS19805 -6.3 -4.4 glycosyl transferase compare
HSERO_RS02330 -5.2 -6.1 aspartate carbamoyltransferase compare
HSERO_RS16050 -4.2 -2.3 peptidase S41 compare
HSERO_RS02340 -3.9 -17.1 dihydroorotase compare
HSERO_RS20985 -3.5 -1.1 serine acetyltransferase compare
HSERO_RS12015 -3.5 -1.5 molecular chaperone DnaK compare
HSERO_RS04325 -3.4 -5.5 helicase I compare
HSERO_RS04330 -3.4 -7.7 ATP-dependent exonuclease compare
HSERO_RS02260 -3.4 -3.5 DNA polymerase I compare
HSERO_RS20250 -3.3 -1.0 large conductance mechanosensitive channel protein MscL compare
HSERO_RS22285 -3.2 -2.7 GntR family transcriptional regulator compare
HSERO_RS15070 -3.2 -1.0 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS05515 -2.8 -0.9 glucose-6-phosphate isomerase compare
HSERO_RS08115 -2.7 -1.7 acyl-CoA-binding protein compare
HSERO_RS03285 -2.7 -1.4 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS05910 -2.6 -2.0 phosphoribosylglycinamide formyltransferase compare
HSERO_RS03450 -2.6 -1.9 energy transducer protein TonB compare
HSERO_RS02325 -2.6 -8.0 uracil phosphoribosyltransferase compare
HSERO_RS23945 -2.6 -2.7 cobyric acid synthase CobQ compare
HSERO_RS18990 -2.6 -2.9 pyrroline-5-carboxylate reductase compare
HSERO_RS02145 -2.5 -1.5 ferritin compare
HSERO_RS05630 -2.4 -1.8 AsnC family transcriptional regulator compare
HSERO_RS20240 -2.3 -1.2 cytochrome B compare
HSERO_RS16885 -2.3 -0.7 magnesium-transporting ATPase compare
HSERO_RS21640 -2.3 -1.8 recombinase RdgC compare
HSERO_RS15835 -2.2 -1.2 aspartate aminotransferase compare
HSERO_RS17980 -2.1 -1.5 GTP-binding protein compare
HSERO_RS10405 -2.0 -2.1 phosphate starvation protein PhoH compare
HSERO_RS02365 -2.0 -2.9 hypothetical protein compare
HSERO_RS13285 -2.0 -1.8 precorrin-2 C20-methyltransferase compare
HSERO_RS13275 -2.0 -1.7 cobalamin biosynthesis protein CbiG compare
HSERO_RS11460 -1.9 -1.7 universal stress protein compare
HSERO_RS14855 -1.9 -9.1 helicase compare
HSERO_RS19630 -1.8 -0.5 AMP nucleosidase compare
HSERO_RS04265 -1.8 -1.5 tyrosine recombinase XerD compare
HSERO_RS13265 -1.7 -2.6 G3E family GTPase compare
HSERO_RS06370 -1.7 -2.2 aromatic compound catabolic protein compare
HSERO_RS21480 -1.6 -0.7 transcriptional regulator compare
HSERO_RS18425 -1.6 -2.1 prephenate dehydrogenase compare
HSERO_RS15040 -1.6 -5.4 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS02095 -1.6 -1.3 Holliday junction DNA helicase RuvB compare
HSERO_RS13515 -1.6 -2.5 XRE family transcriptional regulator compare
HSERO_RS16070 -1.5 -1.1 cytochrome biogenesis protein compare
HSERO_RS09720 -1.5 -2.4 membrane protein compare
HSERO_RS03270 -1.5 -4.5 protein RecA compare
HSERO_RS10815 -1.5 -2.6 chromosome segregation protein SMC compare
HSERO_RS10395 -1.5 -1.7 phosphate transport regulator compare
HSERO_RS09725 -1.5 -3.9 ABC transporter compare
HSERO_RS06165 -1.5 -4.5 ATP-dependent DNA helicase RecG compare
HSERO_RS01815 -1.5 -3.3 gamma-glutamyl kinase compare
HSERO_RS01870 -1.5 -4.1 ABC transporter permease compare
HSERO_RS21345 -1.4 -2.4 cell division inhibitor MinD compare
HSERO_RS03235 -1.4 -1.3 hypothetical protein compare
HSERO_RS07470 -1.4 -1.2 ketosteroid isomerase compare
HSERO_RS15600 -1.4 -3.4 cytosol aminopeptidase compare
HSERO_RS12220 -1.3 -1.2 dehydrogenase compare
HSERO_RS21340 -1.3 -3.5 septum formation inhibitor protein compare
HSERO_RS12475 -1.3 -1.8 histidine kinase compare
HSERO_RS16075 -1.3 -1.4 coproporphyrinogen III oxidase compare
HSERO_RS12300 -1.3 -1.4 hypothetical protein compare
HSERO_RS11160 -1.3 -2.4 glutamine amidotransferase compare
HSERO_RS21470 -1.3 -3.1 hypothetical protein compare
HSERO_RS14670 -1.3 -6.7 phosphoenolpyruvate carboxylase compare
HSERO_RS11065 -1.3 -1.9 quinolinate synthetase compare
HSERO_RS10805 -1.2 -0.9 succinyldiaminopimelate aminotransferase compare
HSERO_RS11475 -1.2 -1.3 hypothetical protein compare
HSERO_RS17530 -1.2 -2.8 RpiR family transcriptional regulator compare
HSERO_RS07025 -1.2 -2.6 ATP-dependent Clp protease ClpS compare
HSERO_RS18965 -1.2 -1.3 thiopurine S-methyltransferase compare
HSERO_RS23740 -1.2 -1.6 blue-light sensor BLUF compare
HSERO_RS13880 -1.2 -0.8 hypothetical protein compare
HSERO_RS19335 -1.2 -1.5 ABC transporter permease compare
HSERO_RS20235 -1.2 -0.8 cytochrome C compare
HSERO_RS03420 -1.1 -1.8 cytochrome B561 compare
HSERO_RS07755 -1.1 -2.4 glutamate racemase compare
HSERO_RS04475 -1.1 -1.2 tail fiber assembly protein compare
HSERO_RS09145 -1.1 -3.0 DNA topoisomerase IV subunit A compare
HSERO_RS18770 -1.1 -2.3 transcriptional regulator compare
HSERO_RS22215 -1.1 -2.0 branched-chain amino acid ABC transporter permease compare
HSERO_RS22205 -1.1 -1.4 L-rhamnose mutarotase compare
HSERO_RS09745 -1.1 -1.1 chemotaxis protein CheY compare
HSERO_RS10850 -1.1 -1.8 ABC transporter compare
HSERO_RS22720 -1.1 -4.7 histidine kinase compare
HSERO_RS02650 -1.1 -4.1 dihydroxy-acid dehydratase compare
HSERO_RS18360 -1.1 -2.3 hypothetical protein compare
HSERO_RS00450 -1.1 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS13340 -1.1 -1.2 hypothetical protein compare
HSERO_RS21540 -1.1 -1.8 alkyl hydroperoxide reductase subunit C compare
HSERO_RS13255 -1.1 -1.8 cobyrinic acid a,c-diamide synthase compare
HSERO_RS20625 -1.1 -0.9 phenylacetate-CoA oxygenase compare
HSERO_RS09740 -1.0 -2.8 histidine kinase compare
HSERO_RS02215 -1.0 -0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS10670 -1.0 -2.0 signal transduction protein compare
HSERO_RS09730 -1.0 -3.0 glycoside hydrolase family 43 compare
HSERO_RS09660 -1.0 -2.1 ribonuclease III compare
HSERO_RS06960 -1.0 -1.8 chemotaxis protein CheY compare
HSERO_RS23640 -1.0 -2.0 Ni/Fe hydrogenase compare
HSERO_RS18355 -1.0 -3.8 recombinase RecR compare
HSERO_RS03240 -1.0 -0.8 membrane protein compare
HSERO_RS01505 -1.0 -2.0 transketolase compare
HSERO_RS16030 -1.0 -1.5 cytochrome oxidase assembly protein compare
HSERO_RS02160 -1.0 -0.6 DNA-dependent helicase compare
HSERO_RS00805 -1.0 -1.3 preprotein translocase subunit SecB compare
HSERO_RS07175 -1.0 -1.4 hypothetical protein compare
HSERO_RS17635 -1.0 -2.5 RNA polymerase sigma-70 factor compare
HSERO_RS13960 -1.0 -2.1 hypothetical protein compare
HSERO_RS02910 -1.0 -2.7 IclR family transcriptional regulator compare
HSERO_RS05850 -1.0 -3.5 exodeoxyribonuclease VII large subunit compare
HSERO_RS24015 -1.0 -3.2 (2Fe-2S)-binding protein compare
HSERO_RS22460 -0.9 -2.6 xylose ABC transporter substrate-binding protein compare
HSERO_RS19610 -0.9 -1.4 hypothetical protein compare
HSERO_RS11205 -0.9 -2.7 cell division protein BolA compare
HSERO_RS13965 -0.9 -0.9 single-stranded DNA exonuclease compare
HSERO_RS02800 -0.9 -0.8 hypothetical protein compare
HSERO_RS03325 -0.9 -1.6 hypothetical protein compare
HSERO_RS10135 -0.9 -1.4 chemotaxis protein CheZ compare
HSERO_RS00180 -0.9 -1.9 hypothetical protein compare
HSERO_RS02965 -0.9 -1.8 gamma-glutamyl phosphate reductase compare
HSERO_RS11090 -0.9 -3.3 phosphoribosylglycinamide formyltransferase compare
HSERO_RS13415 -0.9 -1.6 VdlD compare
HSERO_RS10400 -0.9 -3.3 inorganic phosphate transporter compare
HSERO_RS18455 -0.9 -1.6 phosphoglycolate phosphatase compare
HSERO_RS13295 -0.9 -1.8 membrane protein compare
HSERO_RS20315 -0.9 -2.0 imidazole glycerol phosphate synthase compare
HSERO_RS11595 -0.9 -1.0 ArsR family transcriptional regulator compare
HSERO_RS19595 -0.9 -4.4 glutamate synthase compare
HSERO_RS13260 -0.9 -1.7 cobinamide adenolsyltransferase compare
HSERO_RS15900 -0.9 -3.4 hypothetical protein compare
HSERO_RS14320 -0.9 -1.3 FmdB family transcriptional regulator compare
HSERO_RS13800 -0.9 -2.5 glycosyl transferase family 1 compare
HSERO_RS19265 -0.9 -1.1 LysR family transcriptional regulator compare
HSERO_RS03575 -0.9 -1.4 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS14610 -0.9 -3.8 hypothetical protein compare
HSERO_RS15475 -0.9 -1.3 GNAT family acetyltraansferase compare
HSERO_RS13560 -0.9 -1.7 transcriptional regulator compare
HSERO_RS23475 -0.9 -2.2 hydroxymethylglutaryl-CoA lyase compare
HSERO_RS19490 -0.9 -0.9 hypothetical protein compare
HSERO_RS05640 -0.9 -2.6 N-acetyltransferase GCN5 compare
HSERO_RS02765 -0.8 -1.0 general stress protein compare
HSERO_RS12635 -0.8 -2.4 histidine kinase compare
HSERO_RS03510 -0.8 -3.4 proline aminopeptidase P II compare
HSERO_RS21575 -0.8 -2.5 transcriptional regulator compare
HSERO_RS10870 -0.8 -2.5 methionine aminopeptidase compare
HSERO_RS20775 -0.8 -0.9 membrane protein compare
HSERO_RS23435 -0.8 -1.2 MerR family transcriptional regulator compare
HSERO_RS21760 -0.8 -2.7 DSBA oxidoreductase compare
HSERO_RS07300 -0.8 -1.9 glutamate--cysteine ligase compare
HSERO_RS08960 -0.8 -1.8 2-hydroxyacid dehydrogenase compare
HSERO_RS17105 -0.8 -1.2 DNA polymerase III subunit epsilon compare
HSERO_RS00430 -0.8 -1.2 glutamate--cysteine ligase compare
HSERO_RS18685 -0.8 -0.6 hypothetical protein compare
HSERO_RS02315 -0.8 -1.8 transcriptional regulator compare
HSERO_RS13280 -0.8 -1.2 precorrin-4 C11-methyltransferase compare
HSERO_RS20615 -0.8 -1.4 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS20820 -0.8 -0.6 ABC transporter ATP-binding protein compare
HSERO_RS05195 -0.8 -2.3 xylose ABC transporter ATP-binding protein compare
HSERO_RS05110 -0.8 -1.1 RbsD or FucU transport protein compare
HSERO_RS14300 -0.8 -2.3 nitrogenase iron protein compare
HSERO_RS01020 -0.8 -1.5 hypothetical protein compare
HSERO_RS01325 -0.8 -1.5 cation/multidrug efflux protein compare
HSERO_RS05325 -0.8 -1.0 ribose ABC transporter permease compare
HSERO_RS03190 -0.8 -1.7 glutathione S-transferase compare
HSERO_RS20540 -0.8 -2.1 LamB/YcsF family protein compare
HSERO_RS05715 -0.8 -2.2 amidohydrolase compare
HSERO_RS21990 -0.8 -0.9 hypothetical protein compare
HSERO_RS10975 -0.8 -3.0 stomatin 2 compare
HSERO_RS02545 -0.8 -1.2 membrane protein compare
HSERO_RS03615 -0.8 -3.3 (dimethylallyl)adenosine tRNA methylthiotransferase compare
HSERO_RS18970 -0.8 -1.9 hypothetical protein compare
HSERO_RS09375 -0.8 -1.3 hypothetical protein compare
HSERO_RS18280 -0.8 -2.2 anthranilate 1,2-dioxygenase small subunit compare
HSERO_RS19995 -0.8 -0.4 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS12690 -0.8 -1.1 transcriptional regulator compare
HSERO_RS09915 -0.8 -1.0 transcriptional regulator compare
HSERO_RS07205 -0.8 -3.1 peptidase M48 compare
HSERO_RS16010 -0.8 -2.4 membrane protein compare
HSERO_RS12170 -0.8 -1.8 XRE family transcriptional regulator compare
HSERO_RS04355 -0.8 -2.1 aspartyl-tRNA amidotransferase subunit B compare
HSERO_RS15315 -0.8 -1.0 transcriptional regulator compare
HSERO_RS02535 -0.8 -2.6 short-chain dehydrogenase compare
HSERO_RS21230 -0.8 -1.2 GntR family transcriptional regulator compare
HSERO_RS19720 -0.7 -1.0 glyoxalase compare
HSERO_RS03085 -0.7 -1.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS19785 -0.7 -1.4 sensor histidine kinase compare
HSERO_RS14260 -0.7 -1.3 ferredoxin compare
HSERO_RS09155 -0.7 -3.0 DNA topoisomerase IV subunit B compare
HSERO_RS23515 -0.7 -1.8 lipoprotein compare
HSERO_RS17830 -0.7 -1.1 rhodanese compare
HSERO_RS12195 -0.7 -1.8 hypothetical protein compare
HSERO_RS20330 -0.7 -2.4 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS03090 -0.7 -2.1 deoxyadenosine kinase compare
HSERO_RS09415 -0.7 -2.9 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS09520 -0.7 -1.0 alanyl-tRNA synthetase compare
HSERO_RS17675 -0.7 -2.0 alpha/beta hydrolase compare
HSERO_RS22730 -0.7 -2.1 sugar ABC transporter substrate-binding protein compare
HSERO_RS15695 -0.7 -1.6 sulfurtransferase compare
HSERO_RS12140 -0.7 -1.1 5-deoxyglucuronate isomerase compare
HSERO_RS08925 -0.7 -1.2 amino acid ABC transporter ATPase compare
HSERO_RS03435 -0.7 -1.3 bacterioferritin compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms